BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32060.1
Length=1825
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944763 jgi|Araly1|944763|scaffold_700992.1 2433 0.0
> Ahg944763 jgi|Araly1|944763|scaffold_700992.1
Length=1535
Score = 2433 bits (1317), Expect = 0.0
Identities = 1454/1522 (96%), Gaps = 2/1522 (0%)
Strand=Plus/Plus
Query 36 agagaAACAGGATCATTCATTATGCCCGCCTTATCTCACTACAGATCAGTATCATCTCTA 95
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAGAGAGAGGATCATTCATTATGCCCGCCTTATCTCACTACAGATCAGTATCATCTCTA 60
Query 96 CCGTCCGTTGACCGATCATTCCTTCTCATCCAACGACTCAGGATCCACGGCAGCTCTTCT 155
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CCGTCCGTTGACCGATCCTTCCTTCTCATCCAACGACTCAGGATCCACGGCAGCTCATCT 120
Query 156 TCCTTCCCTGAATCTTCTCCTTCTGCGTCTATTCTCTCCGGCGCAGATCCGTTGAAGTGT 215
||||| || |||||||||||||||||| || |||| |||||||| |||||||||||| ||
Sbjct 121 TCCTTACCAGAATCTTCTCCTTCTGCGGCTCTTCTTTCCGGCGCCGATCCGTTGAAGCGT 180
Query 216 ACGGTCTCTGGTGGATCTCTTGCTAAATGGATCACCGGGATTTCAGCTGGATCCGCCTTA 275
| |||||||| || |||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 181 TCCGTCTCTGGCGGTTCTCTTGCTAAATGGATCTCCGGGATTACAGCTGGATCCGCCTTA 240
Query 276 GGGTTTCTCTATTGGTCCTCTGGTTCTTCTGATTCCATCTCTGGTTTGTTTGGTGGGAGT 335
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 241 GGGTTTCTCTATTGGTCCTCTGGTTTTTCTGATTCGATCTCTGGTTTGTTTGGTGGGAGT 300
Query 336 AATTTATTGTCCTTCGCTGATAGTTCAACGCCTTCTGTTTGTGGTGTAAAAGTCGGCGAT 395
||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 AATTTATTGTCATTTGCTGATAGTTCATCGCCTTCTGTTTGTGGTGTAAAAGTCGGCGAT 360
Query 396 CTGAAACCGAGATCGTTTATTCCGAAATTGTCGTTGCCTGGTTACAGCTCTGGATTCATC 455
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTGAAACCGAGATCGTTTCTTCCGAAATTGTCGTTGCCTGGTTACAGCTCTGGATTCATC 420
Query 456 TTCGGAGATGCGTATAGAAGGAAGATCTTCTTCAATTACGAGAAACGTTTGAGATTACAA 515
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 421 TTCGGAGATGCGTATAGAAGGAAGATCTTCTTCAACTACGAGAAGCGTTTGAGATTACAA 480
Query 516 AGTCCTCCTGAAAAGGTTTTCGAGTACTTTGCATCTGTTCGAACAGATAAAGGAGAAATA 575
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 AGTCCTCCCGAAAAGGTTTTCGAGTACTTTGCATCTATTCGAACAGATAAAGGAGAAATA 540
Query 576 CTAATGAAACCGGCAGATTTGATGAGGGCAATTGTCCCCGTGTTTCCTCCATCAGAATCT 635
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 CTAATGAAACCGGCAGATTTGATGAGAGCAATTGTCCCCGTGTTTCCTCCATCAGAATCT 600
Query 636 CATCTAGTAAGAGAAGGATATTTGACTGGGGAGAGAAATCCTGGTGAACTTAGATGCTCT 695
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 601 CATCTAGTAAGAGAAGGATATTTGACTGGAGAGAGAAATCCCGGTGAACTTAGATGCTCT 660
Query 696 CCTTCCGAGTTCTTCATGCTCTTTGATGTTGATAATGATGGTCTTATATCCTTCAAAGAG 755
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 661 CCTTCCGAGTTCTTCATGCTGTTTGATGTTGATAATGATGGCCTTATATCCTTCAAAGAG 720
Query 756 TATATATTCTTTGTGACATTACTCAGCATTCCTGAATCAAGCTTCGCAGTGGCTTTCAAA 815
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 721 TATATATTCTTTGTGACATTACTCAGCATTCCTGAATCAAGCTTCGCTGTGGCTTTCAAA 780
Query 816 ATGTTTGATACTGACAACAACGGGGAGATTGACAAAGAAGAGTTTAAGACAGTGATGAGT 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ATGTTTGATACTGACAACAACGGGGAGATTGACAAAGAAGAGTTTAAGACAGTGATGAGT 840
Query 876 CTGATGCGATCTCAGCATAGACAAGGAGTTGGCCACAGAGATGGCCTTCGAACAGGGTTA 935
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct 841 CTGATGCGATCTCAGCATCGACAAGGAATTGGCCACAGAGATGGCCTTCGAACAGGATTA 900
Query 936 CATATGACCGGTTCTGTCGAGGATGGAGGATTGGTAGAATACTTCTTTGGGAAAGATGGC 995
||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 901 CATATGACCGGCTCTGTTGAGGATGGAGGCTTGGTAGAATACTTCTTTGGAAAAGATGGC 960
Query 996 AGTCAAAAACTGAAACACGACAAATTCACTAAGTTTATGAAAGATCTAACTGAAGAGATG 1055
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 961 AGTCAAAAACTCAAACATGATAAATTCACTAAGTTTATGAAAGATCTAACTGAAGAGATG 1020
Query 1056 CTGAGGCTGGAGTTTGCACATTATGACTATAAACGAAGAGGAAGTATATCGGCCAAAGAT 1115
|||||||||||||||| ||||||||||||||||| |||||||| |||||| |||||||||
Sbjct 1021 CTGAGGCTGGAGTTTGGACATTATGACTATAAACAAAGAGGAAATATATCAGCCAAAGAT 1080
Query 1116 TTTGCATTGTCGATGGTTGCAGCGGCTGATGCAAGCCATTTGAGCAAGCTGCTTGATAGA 1175
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1081 TTTGCTTTGTCGATGGTGGCAGCGGCTGATGCAAGCCATTTGAGCAAGCTGCTTGATCGA 1140
Query 1176 GTTGAGAGTCTGAGC-GAACACCCGCATCTCCGGGACATGCGTATCTCACTGAAGGAATT 1234
|| |||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1141 GTGGAGAGTCTGA-CTGAACACCCGCATCTCCGGGACATGCGTATCTCACTCAAGGAATT 1199
Query 1235 CAAACAGTTTGATGAGCTACGTAGTAAACTTGGACCATTCTCTCTAGCGCTTTTTGCTTA 1294
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1200 TAAACAGTTTGATGAGCTACGTAGTAAACTTGGACCATTTTCTCTAGCGCTTTTTGCTTA 1259
Query 1295 TGGCAAAGCTAATGGTTTACTTACAATGAAAGATTTCAAACGAGCCGCCTCTCAGGTATG 1354
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1260 TGGCAAAGCTAATGGTTTACTTACAATGAGAGATTTCAAACGAGCTGCCTCTCAGGTATG 1319
Query 1355 TGGAATAACATTGTCAGACAATGTGATAGAAATTGCGTTTCATGTGTTTGACTCGAATCA 1414
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1320 TGGAGTAACATTGTCAGACAATGTGATAGAGATTGCGTTTCATGTGTTTGACTCAAATCG 1379
Query 1415 AGATGGGAATTTGAGTGTGGATGAGTTTTTGCGGGTTCTGCATCGAAGAGAGAGGGACGT 1474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1380 AGATGGGAATTTGAGTGTGGATGAGTTTTTGCGGGTTCTGCATCGAAGAGAGAGGGACAT 1439
Query 1475 GGCACAGCCAATTGCAAAAGGATTGTCTCGGTACTTCTCAGATGGATGGAAGGGTTCTAA 1534
||||||||||||||| || ||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1440 GGCACAGCCAATTGCCAAGGGACTGTCTCGGTACTTCTCAGATGGATGGAATGGTTCTAA 1499
Query 1535 GAACTGTTCCTCATCGTGAAGA 1556
||||||||||| ||||||||||
Sbjct 1500 GAACTGTTCCTGATCGTGAAGA 1521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68524350755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5