BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32080.1
Length=881
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353622 jgi|Araly1|353622|fgenesh1_pg.C_scaffold_7000795 512 2e-144
Ahg353621 jgi|Araly1|353621|fgenesh1_pg.C_scaffold_7000794 316 1e-85
> Ahg353622 jgi|Araly1|353622|fgenesh1_pg.C_scaffold_7000795
Length=384
Score = 512 bits (277), Expect = 2e-144
Identities = 311/328 (95%), Gaps = 0/328 (0%)
Strand=Plus/Plus
Query 365 AGGAATGTGCCGCTGCACTTTCGGCGACATCCAGATCGGGACGGTAAGGACCGGGAAAGA 424
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 57 AGGAATGTGCCGCTGCACTTTCGGCGACATCCAGATCGGGGCGGTAAGGACCGGGAGAGA 116
Query 425 AATCTCCGGACAACCGGAGTGGAAAGTGACGGTAACCAACACGTGCAAGTGTCTGCAGAA 484
|||| ||||||||||||||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 117 AATCGCCGGACAACCGGAGTGGAAAGTGACTGTAATCAACACGTGCAAGTGTCTTCAGAA 176
Query 485 GCACGTGACTCTGTCTTGCGGAGGGTTTGCTCCTGTGAAGCCTGTCGAGCCATGGCTACT 544
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 177 GCACGTGACTCTGTCTTGCGGAGGGTTTGCTCCTGTGAAGCGTGTCGAGCCATGGCTACT 236
Query 545 GCTCCCACAGGGAAACAGGTGTCTTCTGATCAAAGGAGAGGCTTTGCCAGCTGGCGCCTC 604
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GCTCCCACAGGGAAACACGTGTCTTCTGATCAAAGGAGAGGCTTTGCCAGCTGGCGCCGA 296
Query 605 TGCAGAGTTCAGTTACGCCGGCGAGCCTTACATCTTCAGACTCATCGGTTCGACCGTCGA 664
||| ||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||
Sbjct 297 TGCTGAGTTCAGTTACGCCGGCGAGCCTTACATTTTCAGACCCATAGGTTCGACCGTCGA 356
Query 665 TCCAAGCTGCAATAAATCGCTGTTATAA 692
|||||||||||| || | ||||||||||
Sbjct 357 TCCAAGCTGCAAGAATTTGCTGTTATAA 384
Score = 87.9 bits (47), Expect = 1e-16
Identities = 56/60 (93%), Gaps = 2/60 (3%)
Strand=Plus/Plus
Query 10 ATGGCGTTTGCTCTTAAATATTTTGTTGTT-TTTCTTCTTCTCTCTATGGTCTCTCAAGG 68
|||||||||||||||||||||||||||||| ||| ||||| |||||||||| ||||||||
Sbjct 1 ATGGCGTTTGCTCTTAAATATTTTGTTGTTATTT-TTCTTTTCTCTATGGTTTCTCAAGG 59
> Ahg353621 jgi|Araly1|353621|fgenesh1_pg.C_scaffold_7000794
Length=375
Score = 316 bits (171), Expect = 1e-85
Identities = 268/315 (85%), Gaps = 6/315 (2%)
Strand=Plus/Plus
Query 365 AGGAATGTGCCGCTGCACTTTCGGCGACATCCAGATCGGGA-CGGTAAGGACCGGGAAAG 423
|||| |||||| ||||||||| || | |||| |||| ||| |||| ||||| |||| ||
Sbjct 57 AGGACTGTGCCACTGCACTTTTGGTAAGATCCGGATC-GGAGCGGTGAGGACAGGGAGAG 115
Query 424 AAATCTCCGGACAACCGGAGTGGAAAGTGACGGTAACCAACACGTGCAAGTGTCTGCAGA 483
||||| | ||||| ||||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct 116 AAATCGCTGGACAGCCGGAGTGGAAAGTGACGGTAACCAACACGTGCAATTGTTTTCAGA 175
Query 484 AGCACGTGACTCTGTCTTGCGGAGGGTTTGCTCCTGTGAAGCCTGTCGAGCCATGGCTAC 543
|||||||||||||||||||||||||||||| ||||| |||||||||| |||||| ||| |
Sbjct 176 AGCACGTGACTCTGTCTTGCGGAGGGTTTGTTCCTGCGAAGCCTGTCAAGCCATCGCTGC 235
Query 544 TGCTCCCACAGGGAAACAGGTGTCTTCTGATCAAAGGAG-AGGCTTTGCCAGCTGGCGCC 602
| | ||||| ||||||| |||||||||||| ||||||| | |||||||||||||||||
Sbjct 236 TTCAGCCACAAGGAAACACGTGTCTTCTGATTAAAGGAGCAT-CTTTGCCAGCTGGCGCC 294
Query 603 TCTGCAGAGTTCAGTTACGCCGG-CGAGCCTTACATCTTCAGACTCATCGGTTCGACCGT 661
| || |||||| ||||||||| | |||||||||||||||||| | | ||||| | ||
Sbjct 295 ACCGCTCAGTTCACTTACGCCGGTC-AGCCTTACATCTTCAGACCCGTTGGTTCCATGGT 353
Query 662 CGATCCAAGCTGCAA 676
||| ||||| |||||
Sbjct 354 CGACCCAAGTTGCAA 368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32633216952
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5