BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G32090.1

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg353621 jgi|Araly1|353621|fgenesh1_pg.C_scaffold_7000794           571    1e-162


> Ahg353621 jgi|Araly1|353621|fgenesh1_pg.C_scaffold_7000794
Length=375

 Score =  571 bits (309),  Expect = 1e-162
 Identities = 354/376 (94%), Gaps = 2/376 (1%)
 Strand=Plus/Plus

Query  1    ATGGCGTTTGCTCTTAAATGTTTTGTTGTTGTTCTTCTTCTCTCTATGGTCTCTCATGGA  60
            |||||||||||||||||||||||||||||| || |||||||||||||||| ||||| |||
Sbjct  1    ATGGCGTTTGCTCTTAAATGTTTTGTTGTTTTTGTTCTTCTCTCTATGGTTTCTCAAGGA  60

Query  61   CTGTGCCTTTGCACTTTTGGCAAGATCCAGATCGGAGCGGTGAGGACAGGAAGAGAAATC  120
            |||||||  ||||||||||| ||||||| ||||||||||||||||||||| |||||||||
Sbjct  61   CTGTGCCACTGCACTTTTGGTAAGATCCGGATCGGAGCGGTGAGGACAGGGAGAGAAATC  120

Query  121  GGC-GGGCAGCCGGAGTGGAAAGTGACGGTAATCAACACGTGCAATTGTTTTCAGAAGCA  179
             || || ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  121  -GCTGGACAGCCGGAGTGGAAAGTGACGGTAACCAACACGTGCAATTGTTTTCAGAAGCA  179

Query  180  CGTGACTCTATCTTGCGGAGGGTTTGCTCCTGCGAAGCCTGTCAAGCCATTGCTGCTTCA  239
            ||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  180  CGTGACTCTGTCTTGCGGAGGGTTTGTTCCTGCGAAGCCTGTCAAGCCATCGCTGCTTCA  239

Query  240  GCCACAAGGAAACACGTGTCTTATGATTAAAGGAGCAGCTTTGCCAGCTGGCGCCACCGC  299
            |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct  240  GCCACAAGGAAACACGTGTCTTCTGATTAAAGGAGCATCTTTGCCAGCTGGCGCCACCGC  299

Query  300  TCAGTTCACATACGCCGGCCAGCCTTACATCTTCAGACCCGTTGGTTCCAAGGTCGACCC  359
            ||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct  300  TCAGTTCACTTACGCCGGTCAGCCTTACATCTTCAGACCCGTTGGTTCCATGGTCGACCC  359

Query  360  AAGTTGCACGAATTGA  375
            |||||||| |||||||
Sbjct  360  AAGTTGCAAGAATTGA  375



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13392611739


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5