BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32100.1
Length=369
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888904 jgi|Araly1|888904|Al_scaffold_0007_890 403 4e-112
> Ahg888904 jgi|Araly1|888904|Al_scaffold_0007_890
Length=324
Score = 403 bits (218), Expect = 4e-112
Identities = 278/308 (90%), Gaps = 0/308 (0%)
Strand=Plus/Plus
Query 62 GGTATGGGGATGATTCTTATTCTCTCGAGAGCTTATCTGTGATACAATCGAAGACCGGGA 121
||||||||||||||| |||||||||| ||||| ||| ||||| ||||| ||| ||||| |
Sbjct 17 GGTATGGGGATGATTTTTATTCTCTCAAGAGCCTATTTGTGAGACAATGGAAAACCGGAA 76
Query 122 ACATGGTTGAGAACAAACCGGAGTGGGAAGTGAAAGTGCTGAATTCTAGTCCCTGCTATT 181
| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 AAATGGTTAATAACAAACCGGAGTGGGAAGTGAAAGTGCTGAATTCTAGTCCCTGCTATT 136
Query 182 TCACTCACACAACGTTGTCATGTGTCCGTTTCAAATCGGTCACACCCATCGACAGTAAGG 241
||||| | |||| |||||| |||||| ||||| |||||| ||||||||||||||||||||
Sbjct 137 TCACTGATACAAAGTTGTCTTGTGTCGGTTTCCAATCGGACACACCCATCGACAGTAAGG 196
Query 242 TTCTATCTAAATCCGGTGACACGTGTCTCCTCGGCAACGGCGACTCTATCCATGATATCA 301
| |||| ||||||||||||||||||||||||| |||||| ||| ||||||||||| |||
Sbjct 197 TGATATCAAAATCCGGTGACACGTGTCTCCTCGCCAACGGTGACGCTATCCATGATTTCA 256
Query 302 GTTTCAAATACGTATGGGACACAAGCTTCGACCTCAAGGTTGTCGACGGCTACATCGCTT 361
||||||||||||||||||| |||||||||||||||||||| |||||||| | |||||||
Sbjct 257 GTTTCAAATACGTATGGGATACAAGCTTCGACCTCAAGGTCATCGACGGCCAAATCGCTT 316
Query 362 GCTCTTAA 369
||||||||
Sbjct 317 GCTCTTAA 324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13163678205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5