BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32105.1
Length=626
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491523 jgi|Araly1|491523|fgenesh2_kg.7__956__AT4G32105.1 704 0.0
Ahg944758 jgi|Araly1|944758|scaffold_700987.1 496 1e-139
> Ahg491523 jgi|Araly1|491523|fgenesh2_kg.7__956__AT4G32105.1
Length=534
Score = 704 bits (381), Expect = 0.0
Identities = 492/543 (91%), Gaps = 18/543 (3%)
Strand=Plus/Plus
Query 31 AAACGCCTGCCTATAAATACCCAACATCACATTTGGGCACCCATA----C-T--T-ACTA 82
|||||||| || ||||||||||||||||||||| | ||||||||| | | | ||||
Sbjct 1 AAACGCCTCCCGATAAATACCCAACATCACATTCGAGCACCCATACTCTCATAGTGACTA 60
Query 83 CGTTTTCCAAATTTCATCTTTGCTAAAACTCGAAAGAATATCAGACAATGGCATCAAACG 142
|| |||||||||||| |||||| ||||||||||||| ||||||||||||||||||||
Sbjct 61 CG-TTTCCAAATTTCGTCTTTGATAAAACTCGAAAG----TCAGACAATGGCATCAAACG 115
Query 143 CTTGCAAAGTCCTTTGCCTTGTTCTCTTCCTCGCATTCGTTAACCAAGGGTATGGGGATT 202
|||||||| || ||||||||||||||||| |||||||| |||||||||||||||| ||||
Sbjct 116 CTTGCAAACTCATTTGCCTTGTTCTCTTCTTCGCATTCATTAACCAAGGGTATGGAGATT 175
Query 203 GTCATCTAAATTACCTATCTGTGAAACAATCAAAAACCGGAAAATTGGTTCAGAATAAAC 262
||||||||||| |||||||||||||||| || || |||||||||||| ||||||| ||||
Sbjct 176 GTCATCTAAATGACCTATCTGTGAAACAGTCGAAGACCGGAAAATTGATTCAGAACAAAC 235
Query 263 CGGAGTGGGAAGTGAGAGTGACGAACCCTTGCAACAATTGCAAATTCCAGTACACGAAGT 322
| ||||||||||||||||| || ||||||||| | || ||||||||||| ||||| ||||
Sbjct 236 CAGAGTGGGAAGTGAGAGTAACAAACCCTTGC-A-AA-TGCAAATTCCAATACACAAAGT 292
Query 323 TGTCATGTGTCGGTTTCCAATCGGTTACACCCGTCGCTACCTCGTTGTTGTCAAAATCCG 382
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 293 TGTCATGTGTCGGTTTCCAATCGGTTACACCCGTCGCTACCTCGTTGTTGTCGAAATCCG 352
Query 383 GTGACATT-TGTCTCCTCAACGCCGGTAACTTCATCTTTCCTCACGTGGACTTCGTTTTC 441
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 353 GTGAC-TTGTGTCTCCTCAACGCCGGTAAATTCATCTTTCCTCACGTGGACTTCGTTTTC 411
Query 442 AATTACGTTTGGGACACAAGCTTCGACCTCAAGGTTATCGACGGCGTTATCGTTTGTCCT 501
|| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 412 AAATACGTTTGGGACACGAGCTTCGACCTCAAGGTTATCGACGGCGTAATCGTTTGCCCT 471
Query 502 TAATTTTTCTACCCGAATTGTTTCGGTTTTGGTTCATGTTAGCTAGGTCACATGAAACTG 561
||| ||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 472 TAAATTTTCTAGGCGAATTGTTTCGGTTTTGGTTCATGTTAGGTAGATCACATGAAACTG 531
Query 562 ATG 564
|||
Sbjct 532 ATG 534
> Ahg944758 jgi|Araly1|944758|scaffold_700987.1
Length=399
Score = 496 bits (268), Expect = 1e-139
Identities = 323/349 (93%), Gaps = 5/349 (1%)
Strand=Plus/Plus
Query 179 TCGTTAACCAAGGGTATGGGGATTGTCATCTAAATTACCTATCTGTGAAACAATCAAAAA 238
||||||||||||||||||| ||||||||||||||| |||||||||||||||| || || |
Sbjct 55 TCGTTAACCAAGGGTATGGAGATTGTCATCTAAATGACCTATCTGTGAAACAGTCGAAGA 114
Query 239 CCGGAAAATTGGTTCAGAATAAACCGGAGTGGGAAGTGAGAGTGACGAACCCTTGCAACA 298
||||||||||| ||||||| ||||| ||||||||||||||||| || ||||||||| | |
Sbjct 115 CCGGAAAATTGATTCAGAACAAACCAGAGTGGGAAGTGAGAGTAACAAACCCTTGC-A-A 172
Query 299 ATTGCAAATTCCAGTACACGAAGTTGTCATGTGTCGGTTTCCAATCGGTTACACCCGTCG 358
| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 173 A-TGCAAATTCCAATACACAAAGTTGTCATGTGTCGGTTTCCAATCGGTTACACCCGTCG 231
Query 359 CTACCTCGTTGTTGTCAAAATCCGGTGACATT-TGTCTCCTCAACGCCGGTAACTTCATC 417
|||||||||||||||| |||||||||||| || |||||||||||||||||||| ||||||
Sbjct 232 CTACCTCGTTGTTGTCGAAATCCGGTGAC-TTGTGTCTCCTCAACGCCGGTAAATTCATC 290
Query 418 TTTCCTCACGTGGACTTCGTTTTCAATTACGTTTGGGACACAAGCTTCGACCTCAAGGTT 477
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 291 TTTCCTCACGTGGACTTCGTTTTCAAATACGTTTGGGACACGAGCTTCGACCTCAAGGTT 350
Query 478 ATCGACGGCGTTATCGTTTGTCCTTAATTTTTCTACCCGAATTGTTTCG 526
||||||||||| |||||||| |||||| ||||||| ||||||||||||
Sbjct 351 ATCGACGGCGTAATCGTTTGCCCTTAAATTTTCTAGGCGAATTGTTTCG 399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22911873117
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5