BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32105.1 Length=626 Score E Sequences producing significant alignments: (Bits) Value Ahg491523 jgi|Araly1|491523|fgenesh2_kg.7__956__AT4G32105.1 704 0.0 Ahg944758 jgi|Araly1|944758|scaffold_700987.1 496 1e-139 > Ahg491523 jgi|Araly1|491523|fgenesh2_kg.7__956__AT4G32105.1 Length=534 Score = 704 bits (381), Expect = 0.0 Identities = 492/543 (91%), Gaps = 18/543 (3%) Strand=Plus/Plus Query 31 AAACGCCTGCCTATAAATACCCAACATCACATTTGGGCACCCATA----C-T--T-ACTA 82 |||||||| || ||||||||||||||||||||| | ||||||||| | | | |||| Sbjct 1 AAACGCCTCCCGATAAATACCCAACATCACATTCGAGCACCCATACTCTCATAGTGACTA 60 Query 83 CGTTTTCCAAATTTCATCTTTGCTAAAACTCGAAAGAATATCAGACAATGGCATCAAACG 142 || |||||||||||| |||||| ||||||||||||| |||||||||||||||||||| Sbjct 61 CG-TTTCCAAATTTCGTCTTTGATAAAACTCGAAAG----TCAGACAATGGCATCAAACG 115 Query 143 CTTGCAAAGTCCTTTGCCTTGTTCTCTTCCTCGCATTCGTTAACCAAGGGTATGGGGATT 202 |||||||| || ||||||||||||||||| |||||||| |||||||||||||||| |||| Sbjct 116 CTTGCAAACTCATTTGCCTTGTTCTCTTCTTCGCATTCATTAACCAAGGGTATGGAGATT 175 Query 203 GTCATCTAAATTACCTATCTGTGAAACAATCAAAAACCGGAAAATTGGTTCAGAATAAAC 262 ||||||||||| |||||||||||||||| || || |||||||||||| ||||||| |||| Sbjct 176 GTCATCTAAATGACCTATCTGTGAAACAGTCGAAGACCGGAAAATTGATTCAGAACAAAC 235 Query 263 CGGAGTGGGAAGTGAGAGTGACGAACCCTTGCAACAATTGCAAATTCCAGTACACGAAGT 322 | ||||||||||||||||| || ||||||||| | || ||||||||||| ||||| |||| Sbjct 236 CAGAGTGGGAAGTGAGAGTAACAAACCCTTGC-A-AA-TGCAAATTCCAATACACAAAGT 292 Query 323 TGTCATGTGTCGGTTTCCAATCGGTTACACCCGTCGCTACCTCGTTGTTGTCAAAATCCG 382 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 293 TGTCATGTGTCGGTTTCCAATCGGTTACACCCGTCGCTACCTCGTTGTTGTCGAAATCCG 352 Query 383 GTGACATT-TGTCTCCTCAACGCCGGTAACTTCATCTTTCCTCACGTGGACTTCGTTTTC 441 ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 353 GTGAC-TTGTGTCTCCTCAACGCCGGTAAATTCATCTTTCCTCACGTGGACTTCGTTTTC 411 Query 442 AATTACGTTTGGGACACAAGCTTCGACCTCAAGGTTATCGACGGCGTTATCGTTTGTCCT 501 || |||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| Sbjct 412 AAATACGTTTGGGACACGAGCTTCGACCTCAAGGTTATCGACGGCGTAATCGTTTGCCCT 471 Query 502 TAATTTTTCTACCCGAATTGTTTCGGTTTTGGTTCATGTTAGCTAGGTCACATGAAACTG 561 ||| ||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 472 TAAATTTTCTAGGCGAATTGTTTCGGTTTTGGTTCATGTTAGGTAGATCACATGAAACTG 531 Query 562 ATG 564 ||| Sbjct 532 ATG 534 > Ahg944758 jgi|Araly1|944758|scaffold_700987.1 Length=399 Score = 496 bits (268), Expect = 1e-139 Identities = 323/349 (93%), Gaps = 5/349 (1%) Strand=Plus/Plus Query 179 TCGTTAACCAAGGGTATGGGGATTGTCATCTAAATTACCTATCTGTGAAACAATCAAAAA 238 ||||||||||||||||||| ||||||||||||||| |||||||||||||||| || || | Sbjct 55 TCGTTAACCAAGGGTATGGAGATTGTCATCTAAATGACCTATCTGTGAAACAGTCGAAGA 114 Query 239 CCGGAAAATTGGTTCAGAATAAACCGGAGTGGGAAGTGAGAGTGACGAACCCTTGCAACA 298 ||||||||||| ||||||| ||||| ||||||||||||||||| || ||||||||| | | Sbjct 115 CCGGAAAATTGATTCAGAACAAACCAGAGTGGGAAGTGAGAGTAACAAACCCTTGC-A-A 172 Query 299 ATTGCAAATTCCAGTACACGAAGTTGTCATGTGTCGGTTTCCAATCGGTTACACCCGTCG 358 | ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 173 A-TGCAAATTCCAATACACAAAGTTGTCATGTGTCGGTTTCCAATCGGTTACACCCGTCG 231 Query 359 CTACCTCGTTGTTGTCAAAATCCGGTGACATT-TGTCTCCTCAACGCCGGTAACTTCATC 417 |||||||||||||||| |||||||||||| || |||||||||||||||||||| |||||| Sbjct 232 CTACCTCGTTGTTGTCGAAATCCGGTGAC-TTGTGTCTCCTCAACGCCGGTAAATTCATC 290 Query 418 TTTCCTCACGTGGACTTCGTTTTCAATTACGTTTGGGACACAAGCTTCGACCTCAAGGTT 477 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 291 TTTCCTCACGTGGACTTCGTTTTCAAATACGTTTGGGACACGAGCTTCGACCTCAAGGTT 350 Query 478 ATCGACGGCGTTATCGTTTGTCCTTAATTTTTCTACCCGAATTGTTTCG 526 ||||||||||| |||||||| |||||| ||||||| |||||||||||| Sbjct 351 ATCGACGGCGTAATCGTTTGCCCTTAAATTTTCTAGGCGAATTGTTTCG 399 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22911873117 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5