BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32120.1
Length=1652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491522 jgi|Araly1|491522|fgenesh2_kg.7__955__AT4G32120.1 2412 0.0
Ahg932673 jgi|Araly1|932673|scaffold_400661.1 1081 0.0
Ahg899935 jgi|Araly1|899935|Al_scaffold_0004_585 414 9e-115
> Ahg491522 jgi|Araly1|491522|fgenesh2_kg.7__955__AT4G32120.1
Length=1548
Score = 2412 bits (1306), Expect = 0.0
Identities = 1452/1520 (96%), Gaps = 20/1520 (1%)
Strand=Plus/Plus
Query 63 TATCATCATCTGTTACTTCTTAGATTTGCTTATCCTTCTTCACTTTCTCAATTTTGAATC 122
||| |||||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 19 TAT-ATCATCTGTTACTTGTTAGATTTGCTTTTCCTTGTTCACTTTCTCGATTTTGAATC 77
Query 123 TGAGAATTCG------TG---CCTCCGATCTCTCTCCCTCTCGCCGTGGATAGAGATGGA 173
|||||||||| || ||||||||||||||||||||||||| |||| ||||||||
Sbjct 78 TGAGAATTCGTCTCTCTGCCTCCTCCGATCTCTCTCCCTCTCGCCGCGGATTGAGATGGA 137
Query 174 GAGCTTACCAACGACGGTCTCAGGGAAATCAGACCGGCGAGGTAGGTTTTCCAAGTCTCA 233
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 138 GAGCTTACCAACGACGGTCTCAGCGAAATCAGACCGGCGAGGTAGGCCTTCCAAGTCTCA 197
Query 234 GAACACCTCCAAGCCCTCTCTTATCTTGGCCTTCTTCTCTTGTCTTGCTTGGCTCTACGT 293
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 198 GAACACCTCCAAGCCCTCTCTTATCTTGGCCTTCTTCTCCTGTCTGGCTTGGCTCTACGT 257
Query 294 CGCTGGCCGGTTATGGCAAGATGCGCAGTACAGAGCAGCACTCAATACTGTGCTTAAGAT 353
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 258 CGCTGGCCGGTTGTGGCAAGATGCACAGTACAGAGCAGCACTCAATACTGTGCTTAAGAA 317
Query 354 GAATTATGATCAGAGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATG 413
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 318 GAATTATGATCAGAGGCCTAAGGTTCTTACGGTGGAGGACAAGCTGGTAGTCCTTGGATG 377
Query 414 CAAAGATCTTGAGAGGAGAATTGTTGAAACTGAAATGGAGTTGGCACAGGCAAAGAGTCA 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 CAAAGATCTTGAGAGGAGAATTGTTGAAACTGAAATGGAGTTGGCACAGGCAAAGAGTCA 437
Query 474 AGGCTATCTTAAAAAACAGAAAAGTGTCTCTTCTTCAGGGAAGAAAATGCTAGCTGTTAT 533
||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 438 AGGCTATCTTAAAAACCAGAAAAGTGTCTCTTCCTCAGGGAAGAAAATGCTTGCTGTTAT 497
Query 534 TGGAGTTTACACAGGCTTTGGAAGTCACTTGAAGCGCAATAAATTTAGAGGCTCTTGGAT 593
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 498 TGGAGTTTACACAGGTTTTGGAAGTCATTTGAAGCGCAATAAATTTAGAGGCTCTTGGAT 557
Query 594 GCCACGAGATGATGCTCTT-AAAAAACTTGAGGAAAGAGGAGTTGTCATACGCTTTGTGA 652
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 558 GCCACGAGATGATGCT-TTGAAAAAACTTGAGGAAAGAGGAGTTGTCATACGCTTTGTGA 616
Query 653 TTGGTCGGAGTGCTAACCGAGGTGATAGCCTAGATAGAAAAATTGACGAAGAAAATCGTG 712
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 617 TTGGTCGGAGTGCTAACCGAGGTGATAGCCTAGATAGGAAAATTGACGAAGAAAATCGTG 676
Query 713 CAACTAAAGACTTTTTGATTCTTGAGAATCACGAGGAAGCCCAAGAAGAGTTACCGAAGA 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 677 CAACTAAAGACTTTTTGATTCTTGAGAATCACGAGGAAGCCCAAGAAGAGTTACCAAAGA 736
Query 773 AAGTGAAGTTCTTCTACAGTGCTGCTGTTCAGAATTGGGACGCAGAGTTTTATGTCAAAG 832
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 737 AAGTGAAGTTCTTCTACAGTGCTGCTGTTCAGAATTGGGATGCAGAGTTTTATGTCAAAG 796
Query 833 TTGATGACAACGTTGACTTGGATCTTGAGGGGATGATTGCGCTTCTTGAAAGTCGTCGTA 892
||||||||||||||||| | ||||||||||||||||||| |||||||||||| ||||||
Sbjct 797 TTGATGACAACGTTGACCTAGATCTTGAGGGGATGATTGGGCTTCTTGAAAGCCGTCGTG 856
Query 893 GTCAAGATGGTGCTTACATTGGGTGCATGAAATCTGGAGATGTGATTACTGAAGAGGGAA 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 GTCAAGATGGTGCTTACATTGGGTGCATGAAATCTGGAGATGTGATTACTGAAGAGGGAA 916
Query 953 GTCAATGGTATGAGCCTGAGTGGTGGAAATTTGGGGACGACAAATCGTATTTCCGTCATG 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 GTCAATGGTATGAGCCTGAGTGGTGGAAATTTGGGGACGACAAATCGTATTTCCGTCATG 976
Query 1013 CAACTGGTTCGCTGGTAATACTCTCAAAGAATCTGGCTCAGTATGTCAATATAAACAGTG 1072
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 977 CTACTGGTTCGCTGGTAATACTCTCCAAGAATCTGGCTCAGTATGTCAATATAAACAGTG 1036
Query 1073 GATTGTTGAAGACATATGCGTTTGATGATACCACCATTGGATCATGGATGATTGGCGTCC 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GATTGTTGAAGACATATGCGTTTGATGATACCACCATTGGATCATGGATGATTGGCGTCC 1096
Query 1133 AGGCAACATATATAGACGACAATCGCCTTTGCTGCAGCAGCACAAGACAAGAAAAAGTGT 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 AGGCAACATATATAGACGACAATCGCCTTTGCTGCAGCAGCACAAGACAAGAAAAAGTGT 1156
Query 1193 GTTCCATGGCATGATCACTGCATAGATGATCCTCTTGTCCCAGAGCAAAGACGGCGGTTT 1252
||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1157 GTTCCATGGCATGATCAATGCATAGCTGATCCTCTTGTCCCAGAGCAAAGACGACGGTTT 1216
Query 1253 CTCATCGCATTCATGGCGCTCCGATACTCTTTTGGGGCAGATTCTTGGACCGGATACTGA 1312
||||| |||||||||| |||| |||||||||||| |||| ||||||||||||||||||||
Sbjct 1217 CTCATTGCATTCATGGTGCTCTGATACTCTTTTGAGGCAAATTCTTGGACCGGATACTGA 1276
Query 1313 ACTTATC-ATTAGTTTTGTTAGAATGGGAGTATGATTAGGCCATTCATTACAGTTTATGA 1371
| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 ATTTA-CGATTAGTTTTGTTAGAATGGGAGTATGATTAGGCCATTCATTACAGTTTATGA 1335
Query 1372 TTAGAGGCATGCGTATCCCTTGAGCTTTGGAGTAAGAAAATGGGGAAATGGTATAGATGT 1431
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1336 TTAG-GGCATGCGTATCCCTTGAGCTTTGGAGTAAGAAAATGGGGAAATGGTATAGTTGT 1394
Query 1432 GAATGAAGTATAATTTTTCCTTTGGTATCA-TATCACCATCATTTGTCCGTCCATTCTAG 1490
|||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1395 GAAT-AAGTATAATTTTTCCTTTGGTATCACT-TCACCATCATTTGTCCGTCCATTCTAG 1452
Query 1491 CCCAATCTCTGGCAGGCGTTTAATGTTCGAACCTTAAGTTTGCATTTTTGGTTGCTGGTT 1550
| |||||||||||| | |||| ||||||||||||||||||||||||| |||| | |||||
Sbjct 1453 CTCAATCTCTGGCAAG-GTTTCATGTTCGAACCTTAAGTTTGCATTTCTGGT-GATGGTT 1510
Query 1551 TTTAAAAATGTGTTAGTTAA 1570
|| |||||||||||||||||
Sbjct 1511 TTAAAAAATGTGTTAGTTAA 1530
> Ahg932673 jgi|Araly1|932673|scaffold_400661.1
Length=1082
Score = 1081 bits (585), Expect = 0.0
Identities = 908/1064 (85%), Gaps = 21/1064 (2%)
Strand=Plus/Plus
Query 158 CGTGGATAGAGATGGAGAGCTTACCAACGACGGTCTCAG-GGAAATCAGACCGGCGAGGT 216
||||||| |||||||||| |||||| |||||||| || | |||||||| || |||| |
Sbjct 11 CGTGGATTGAGATGGAGACCTTACCCACGACGGT-TCCGTCAAAATCAGAACGACGAGCT 69
Query 217 AGGTTTTCCAAG---TCTCAGAACACCTCCAAGCCCTCTCTTATCTTGGCCTTCTTCTCT 273
||| |||||| ||||||| |||| |||||||| |||| |||| |||||||||
Sbjct 70 CGGTCCTCCAAGTCTTCTCAGAGTTCCTCTAAGCCCTCAGTTATAATGGCTTTCTTCTCT 129
Query 274 TGTC-TTGCTTGGCTCTACGTCGCTGGCCGGTTATGGCAAGATGC-GCAGTACAGAGCAG 331
|| | | ||||||||||| |||||||| ||||||||||||||||| | || | |||| |
Sbjct 130 TG-CGTCGCTTGGCTCTATGTCGCTGGTCGGTTATGGCAAGATGCAG-AGAATAGAGTGG 187
Query 332 CACTCAATACTGTGCTTAAGATGAATTATGATCAGAGGCCTAAGGTTCTTACGGTGGAGG 391
|||||||| | | ||||||| || |||| |||||| | |||||||||||||||| | |
Sbjct 188 TACTCAATAATATTCTTAAGAAGAGTTATCATCAGAAGACTAAGGTTCTTACGGTTAATG 247
Query 392 ACAAACTTG-TGGTCCTTGGATGCAAAGATCTTGAGAGGAGAATTGTTGAAACTGAAATG 450
|| || ||| | ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 AC-AAGTTGATCGTCCTAGGATGCAAAGATCTTGAGAGGAGAATTGTTGAAACTGAAATG 306
Query 451 GAGTTGGCACAGGCAAAGAGTCAAGGCTATCTTAAAAAACAGAAAAGTG-TCTCTTCTTC 509
|||||| | | |||||||||||||||||||| ||||| ||||| |||| | ||||||||
Sbjct 307 GAGTTGACTCTTGCAAAGAGTCAAGGCTATCTGAAAAACCAGAAGAGTGGT-TCTTCTTC 365
Query 510 AGGGAAGAAAATGCTAGCTGTTATTGGAGTTTACACAGGCTTTGGAAGTCACTTGAAGCG 569
|||||||||| |||| ||||| ||||||||||| ||||| ||||||||||| |||| |||
Sbjct 366 AGGGAAGAAATTGCTTGCTGTGATTGGAGTTTATACAGGTTTTGGAAGTCATTTGAGGCG 425
Query 570 CAATAAATTTAGAGGCTCTTGGATGCCACGAGATGATGCTCTTAAA-AAACTTGAGGAAA 628
|||| ||||||||| |||||||||||| || ||||||| || | |||||||||||||
Sbjct 426 TAATACATTTAGAGGGACTTGGATGCCACAAGGTGATGCT-TTGAGGAAACTTGAGGAAA 484
Query 629 GAGGAGTTGTCATACGCTTTGTGATTGGTCGGAGTGCTAACCGAGGTGATAGCCTAGATA 688
||||| |||||||||| |||||||||||||| ||| | || || ||||||||| |||||
Sbjct 485 GAGGAATTGTCATACGTTTTGTGATTGGTCGAAGTCCAAATCGGGGTGATAGCTTAGATC 544
Query 689 GAAAAATTGACGAAGAAAATCGTGCAACTAAAGACTTTTTGATTCTTGAGAATCACGAGG 748
||||||| ||||| ||||||| |||| ||||| |||||||||||||||||||||||||
Sbjct 545 GAAAAATCGACGAGGAAAATCAAGCAAGAAAAGATTTTTTGATTCTTGAGAATCACGAGG 604
Query 749 AAGCCCAAGAAGAGTTACCGAAGAAAGTGAAGTTCTTCTACAGTGCTGCTGTTCAGAATT 808
| |||||||||||| |||| ||||||||||||||||||| |||||||||||||| || |
Sbjct 605 AGGCCCAAGAAGAGCTACCCAAGAAAGTGAAGTTCTTCTTTAGTGCTGCTGTTCAAAACT 664
Query 809 GGGACGCAGAGTTTTATGTCAAAGTTGATGACAACGTTGACTTGGATCTTGAGGGGATGA 868
|||| ||| ||||||| |||||||||||||||| ||||| | |||||||||||| |||
Sbjct 665 GGGATGCACAGTTTTACATCAAAGTTGATGACAATATTGACCTAGATCTTGAGGGGTTGA 724
Query 869 TTGCGC-TTCTTGAAAGTCGTCGTAGTCAAGATGGTGCTTACATTGGGTGCATGAAATCT 927
||| || |||||||||| || ||| ||||||||| ||||||||||||||| ||||| |||
Sbjct 725 TTG-GCCTTCTTGAAAGCCGGCGTGGTCAAGATGCTGCTTACATTGGGTGTATGAAGTCT 783
Query 928 GGAGATGTGATTACTGAAGAGGGAAGTCAATGGTATGAGCCTGAGTGGTGGAAATTTGGG 987
|| || ||| || ||||||||||| | |||||||||||||| || |||||||||||||||
Sbjct 784 GGTGAAGTGGTTGCTGAAGAGGGAGGGCAATGGTATGAGCCAGAATGGTGGAAATTTGGG 843
Query 988 GACGACAAATCGTATTTCCGTCATGCAACTGGTTCGCTGGTAATACTCTC-AAAGAATCT 1046
||||| |||||||| |||||||||||| ||||||||||| ||||||| || ||| ||| |
Sbjct 844 GACGAAAAATCGTACTTCCGTCATGCAGCTGGTTCGCTGTTAATACTATCCAAA-AATTT 902
Query 1047 GGCTCAGTATGTCAATATAAACAGTGGATTGTTGAAGACATATGCGTTTGATGATACCAC 1106
|||||||||||| || ||||||||||||| |||||||||||||| |||||||||||| |
Sbjct 903 GGCTCAGTATGTAAACATAAACAGTGGATCATTGAAGACATATGCATTTGATGATACCTC 962
Query 1107 CATTGGATCATGGATGATTGGCGTCCAGGCAACATATATAGACGACAATCGCCTTTGCTG 1166
|| ||||| ||||||||||| || |||||||| ||||| ||||||||||||||||||||
Sbjct 963 TATAGGATCTTGGATGATTGGTGTTCAGGCAACTTATATTGACGACAATCGCCTTTGCTG 1022
Query 1167 CAGCAGCA-CAAGACAAGAAAAAGTGTGTTCCATGGCATGATCA 1209
|||||||| || ||||||| || |||||||| |||| ||||||
Sbjct 1023 CAGCAGCATCA-GACAAGACAAGGTGTGTTCTGTGGCTTGATCA 1065
> Ahg899935 jgi|Araly1|899935|Al_scaffold_0004_585
Length=324
Score = 414 bits (224), Expect = 9e-115
Identities = 284/312 (91%), Gaps = 7/312 (2%)
Strand=Plus/Plus
Query 169 ATGGAGAGCTTACCAACGACGGTCTCAGGGAAATCAGACCGGCGAGGTAGGTTTTCCAAG 228
|||||||||||||||||||||||||| | ||||||||||||||||||||| ||| |||
Sbjct 1 ATGGAGAGCTTACCAACGACGGTCTCTGCTAAATCAGACCGGCGAGGTAGGCCTTCTAAG 60
Query 229 TCTCAGAACACCTCCAAGCCCTCTCTTATCTTGGCCTTCTTCTCTTGTCTTGCTTGGCTC 288
|||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 61 TCTCAGAACACCTCCAAGCCCTCTCTTATCTTAGCCTTCTTCTCCTGTCTAGCTTGGCTC 120
Query 289 TACGTCGCTGGCC----GGTTATGGCAAGATGCGCAGTACAGAGCAGCACTCAATACTGT 344
| | |||| || |||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 121 T-GGCCGCTTACCTTTAGGTTGTGGCAAGATGCACAGTACAGAGCAGCACTCAATACTGT 179
Query 345 GCTTAAGATGAATTATGATCAGAGGCCTAAGGTTCTTACGGTGGAGGACAAACTTG-TGG 403
|||||||| |||||||||||||||||||||||||||||||||||||||||| | || | |
Sbjct 180 GCTTAAGAAGAATTATGATCAGAGGCCTAAGGTTCTTACGGTGGAGGACAAGC-TGCTAG 238
Query 404 TCCTTGGATGCAAAGATCTTGAGAGGAGAATTGTTGAAACTGAAATGGAGTTGGCACAGG 463
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 239 CCCTTGGATGCAAAGATCTTGAGAGGAGAATTGTTGAAACTGGAATGGAGTTGGCACATG 298
Query 464 CAAAGAGTCAAG 475
||||||||||||
Sbjct 299 CAAAGAGTCAAG 310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61934738370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5