BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G32130.1

Length=1039
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944752 jgi|Araly1|944752|scaffold_700981.1                        985    0.0   
  Ahg899968 jgi|Araly1|899968|Al_scaffold_0004_618                     568    4e-161


> Ahg944752 jgi|Araly1|944752|scaffold_700981.1
Length=668

 Score =  985 bits (533),  Expect = 0.0
 Identities = 624/665 (94%), Gaps = 18/665 (3%)
 Strand=Plus/Plus

Query  99   GATCTGCTGACGAAGACCATGGCGCCGATTTTCAGATCCACTTCCCTTATCGcttt--t-  155
            ||||| | ||||| |||||||||||||||| ||||||||||||||||| |||||||  | 
Sbjct  4    GATCTCCGGACGACGACCATGGCGCCGATTCTCAGATCCACTTCCCTTGTCGCTTTGATC  63

Query  156  -tct--c-----tct-tcttcttcttctttgcttccactcttcCGATCTCATCT--G---  201
             |||  |     ||| || ||||||| |||||||||||||||||||||||||||  |   
Sbjct  64   GTCTGCCAGATTTCTCTCATCTTCTTATTTGCTTCCACTCTTCCGATCTCATCTGGGTCT  123

Query  202  G-GTCTGAGGATAGTTACACGATCACGGGTAGAGTGAGGGTTCCAGCAAGCACCGTGATT  260
            | |||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||
Sbjct  124  GAGTCTGAGGATAGTTACACAATCACGGGTAGAGTAAGGATCCCAGCAAGCACCGTGATT  183

Query  261  GGTCATGCAGCTAAATTCTCAAATATCAAAGTTATACTCAACGGTGGACAGCATGTTACT  320
            ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct  184  GGTCATGCAGCTAAATTCTCAAATATCAAAGTTATACTCAATGGTGGGCAGCATGTTACT  243

Query  321  TTCCTCAGGCCGGATGGATACTTTACCTTCCACAAAGTGCCAGCGGGGACTCATCTGATT  380
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  244  TTCCTCAGGCCGGATGGATACTTTACCTTCCACAAAGTGCCAGCTGGGACTCATCTGATT  303

Query  381  GAAGTTTATGCACTGGGCTACTTCTTCTCCCCAGTGCGAGTTGATGTTAGTGCTCGGCAT  440
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  304  GAAGTTTATGCAATGGGCTACTTCTTCTCCCCAGTGCGAGTTGATGTTAGTGCTCGGCAT  363

Query  441  CGTGGCAAGGTTCAAGCAACACTTACAGAAACCAGAAGGAGTCTTACTGAGCTGGTTTTG  500
            ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct  364  CGTGGAAAGGTTCAAGCAACACTAACAGAAACCAGGAGGAGTCTTACTGAGCTGGTCTTG  423

Query  501  GAGCCATTGCGGGCAGAGCAATACTACGAGATGCGAGAACCTTTCTCTGTAATGTCAATT  560
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  424  GAGCCACTGCGGGCAGAGCAATACTACGAGATGCGAGAACCTTTCTCTGTAATGTCAATT  483

Query  561  GTGAAAAGTCCAATGGGTCTTATGGTGGGATTCATGGTCGTTGTCGTGTTCTTAATGCCT  620
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  484  TTGAAAAGTCCAATGGGTCTTATGGTGGGATTCATGGTCGTTGTCGTGTTCTTAATGCCT  543

Query  621  AAGTTGATGGAAAACATAGATCCCGAGGAAATGAAGAGCGCACAAGAGCAGATGAGAAGC  680
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  544  AAGTTGATGGAAAACATAGATCCAGAGGAAATGAAGAGCGCACAAGAGCAGATGAGAAGC  603

Query  681  CAAGGAGTGCCTTCACTCACTAGCTTGTTACCCGCTAGCCGCTAAGCGTTAACCAACAGT  740
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  604  CAAGGAGTGCCTTCACTCACTAGCTTGCTACCCGCTAGCCGCTAAGCGTTAACCAACAGT  663

Query  741  CCAAG  745
            |||||
Sbjct  664  CCAAG  668


> Ahg899968 jgi|Araly1|899968|Al_scaffold_0004_618
Length=636

 Score =  568 bits (307),  Expect = 4e-161
 Identities = 478/560 (85%), Gaps = 14/560 (3%)
 Strand=Plus/Plus

Query  160  tcttcttcttcttctttgcttccactcttcCGAT-CTCATCTGGGTCTGAGGATAGTTAC  218
            ||| |||| |||||||| ||||||| | ||| || ||| |||||||||||||||||||||
Sbjct  62   TCTGCTTCATCTTCTTTACTTCCAC-CCTCCCATGCTCTTCTGGGTCTGAGGATAGTTAC  120

Query  219  ACGATCACGGGTAGAGTGAGGGTTCCAGCAAGCACCGTGATTGGTCATGCAGCTAAA-TT  277
            || || || |||||||| | | ||||| ||||||  |||||||||||   ||| ||| ||
Sbjct  121  ACCATTACTGGTAGAGTCAAGATTCCACCAAGCAATGTGATTGGTCACATAGC-AAAGTT  179

Query  278  CTCAAATATCAAAGTTATACTCAACGGTGGACAGCATG-TTAC-TTTCCTCAGGCCGGAT  335
            ||| ||| |||||||||||||||| ||||||||| | | |||| ||| |||||||| |||
Sbjct  180  CTCTAATGTCAAAGTTATACTCAATGGTGGACAG-AAGATTACGTTT-CTCAGGCCTGAT  237

Query  336  GGATACTTTACCTTCCACAAAGTGCCAGCGGGGACTCATCTGATTGAAGTTTATGCACTG  395
            ||||||||||| || ||| ||||||| || || |||||| |||||||||| | |||| ||
Sbjct  238  GGATACTTTACTTTTCACGAAGTGCCTGCTGGAACTCATTTGATTGAAGTATCTGCAATG  297

Query  396  GGCTACTTCTTCTCCCCAGTGCGAGTTGATGTTAGTGCTCGGCATCGTGGCAAGGTTCAA  455
            ||||||||||| || || || ||| | |||||||||||||||||||||||||||||||||
Sbjct  298  GGCTACTTCTTTTCTCCGGTACGAATAGATGTTAGTGCTCGGCATCGTGGCAAGGTTCAA  357

Query  456  GCAACACTTACAGAAACCAGAAGGAGTCTTACTGAGCTGGTTTTGGAGCCATTGCGGGCA  515
            |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct  358  GCAACACTAACAGAAACCAGGAGGAGTCTTACTGAGCTGGTTTTGGAGCCATTGAGGGAA  417

Query  516  GAGCAATACTACGAGATGCGAGAACCTTTCT-C-TGTAATGTCAATTGTGAAAAGTCCAA  573
            ||||||||||| ||||| ||||| ||||||  | | |  |||| || ||||||||||| |
Sbjct  418  GAGCAATACTATGAGATCCGAGAGCCTTTCAACATTT--TGTCGATCGTGAAAAGTCCGA  475

Query  574  TGGGTCTTATGGTGGGATTCATGGTCGTTGTCGTGTTCTTAATGCCTAAGTTGATGGAAA  633
            ||||||| ||||||||||||||||| ||||| |||||| ||||||| || || |||||||
Sbjct  476  TGGGTCTCATGGTGGGATTCATGGTTGTTGTTGTGTTCCTAATGCCCAAATTAATGGAAA  535

Query  634  ACATAGATCCCGAGGAAATGAAG-AGCGCACAAGAGCAGATGAGAAGCCAAGGAGTGCCT  692
            |||||||||| ||||| |||||| |  ||||||||| | ||||| || ||||| ||||||
Sbjct  536  ACATAGATCCAGAGGAGATGAAGCAA-GCACAAGAGGAAATGAGGAGACAAGGCGTGCCT  594

Query  693  TCACTCACTAGCTTGTTACC  712
            || ||||| |||||||||||
Sbjct  595  TCGCTCACGAGCTTGTTACC  614



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38656637838


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5