BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32130.1
Length=1039
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944752 jgi|Araly1|944752|scaffold_700981.1 985 0.0
Ahg899968 jgi|Araly1|899968|Al_scaffold_0004_618 568 4e-161
> Ahg944752 jgi|Araly1|944752|scaffold_700981.1
Length=668
Score = 985 bits (533), Expect = 0.0
Identities = 624/665 (94%), Gaps = 18/665 (3%)
Strand=Plus/Plus
Query 99 GATCTGCTGACGAAGACCATGGCGCCGATTTTCAGATCCACTTCCCTTATCGcttt--t- 155
||||| | ||||| |||||||||||||||| ||||||||||||||||| ||||||| |
Sbjct 4 GATCTCCGGACGACGACCATGGCGCCGATTCTCAGATCCACTTCCCTTGTCGCTTTGATC 63
Query 156 -tct--c-----tct-tcttcttcttctttgcttccactcttcCGATCTCATCT--G--- 201
||| | ||| || ||||||| ||||||||||||||||||||||||||| |
Sbjct 64 GTCTGCCAGATTTCTCTCATCTTCTTATTTGCTTCCACTCTTCCGATCTCATCTGGGTCT 123
Query 202 G-GTCTGAGGATAGTTACACGATCACGGGTAGAGTGAGGGTTCCAGCAAGCACCGTGATT 260
| |||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||
Sbjct 124 GAGTCTGAGGATAGTTACACAATCACGGGTAGAGTAAGGATCCCAGCAAGCACCGTGATT 183
Query 261 GGTCATGCAGCTAAATTCTCAAATATCAAAGTTATACTCAACGGTGGACAGCATGTTACT 320
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 184 GGTCATGCAGCTAAATTCTCAAATATCAAAGTTATACTCAATGGTGGGCAGCATGTTACT 243
Query 321 TTCCTCAGGCCGGATGGATACTTTACCTTCCACAAAGTGCCAGCGGGGACTCATCTGATT 380
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 244 TTCCTCAGGCCGGATGGATACTTTACCTTCCACAAAGTGCCAGCTGGGACTCATCTGATT 303
Query 381 GAAGTTTATGCACTGGGCTACTTCTTCTCCCCAGTGCGAGTTGATGTTAGTGCTCGGCAT 440
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GAAGTTTATGCAATGGGCTACTTCTTCTCCCCAGTGCGAGTTGATGTTAGTGCTCGGCAT 363
Query 441 CGTGGCAAGGTTCAAGCAACACTTACAGAAACCAGAAGGAGTCTTACTGAGCTGGTTTTG 500
||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 364 CGTGGAAAGGTTCAAGCAACACTAACAGAAACCAGGAGGAGTCTTACTGAGCTGGTCTTG 423
Query 501 GAGCCATTGCGGGCAGAGCAATACTACGAGATGCGAGAACCTTTCTCTGTAATGTCAATT 560
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 GAGCCACTGCGGGCAGAGCAATACTACGAGATGCGAGAACCTTTCTCTGTAATGTCAATT 483
Query 561 GTGAAAAGTCCAATGGGTCTTATGGTGGGATTCATGGTCGTTGTCGTGTTCTTAATGCCT 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 TTGAAAAGTCCAATGGGTCTTATGGTGGGATTCATGGTCGTTGTCGTGTTCTTAATGCCT 543
Query 621 AAGTTGATGGAAAACATAGATCCCGAGGAAATGAAGAGCGCACAAGAGCAGATGAGAAGC 680
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 544 AAGTTGATGGAAAACATAGATCCAGAGGAAATGAAGAGCGCACAAGAGCAGATGAGAAGC 603
Query 681 CAAGGAGTGCCTTCACTCACTAGCTTGTTACCCGCTAGCCGCTAAGCGTTAACCAACAGT 740
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 604 CAAGGAGTGCCTTCACTCACTAGCTTGCTACCCGCTAGCCGCTAAGCGTTAACCAACAGT 663
Query 741 CCAAG 745
|||||
Sbjct 664 CCAAG 668
> Ahg899968 jgi|Araly1|899968|Al_scaffold_0004_618
Length=636
Score = 568 bits (307), Expect = 4e-161
Identities = 478/560 (85%), Gaps = 14/560 (3%)
Strand=Plus/Plus
Query 160 tcttcttcttcttctttgcttccactcttcCGAT-CTCATCTGGGTCTGAGGATAGTTAC 218
||| |||| |||||||| ||||||| | ||| || ||| |||||||||||||||||||||
Sbjct 62 TCTGCTTCATCTTCTTTACTTCCAC-CCTCCCATGCTCTTCTGGGTCTGAGGATAGTTAC 120
Query 219 ACGATCACGGGTAGAGTGAGGGTTCCAGCAAGCACCGTGATTGGTCATGCAGCTAAA-TT 277
|| || || |||||||| | | ||||| |||||| ||||||||||| ||| ||| ||
Sbjct 121 ACCATTACTGGTAGAGTCAAGATTCCACCAAGCAATGTGATTGGTCACATAGC-AAAGTT 179
Query 278 CTCAAATATCAAAGTTATACTCAACGGTGGACAGCATG-TTAC-TTTCCTCAGGCCGGAT 335
||| ||| |||||||||||||||| ||||||||| | | |||| ||| |||||||| |||
Sbjct 180 CTCTAATGTCAAAGTTATACTCAATGGTGGACAG-AAGATTACGTTT-CTCAGGCCTGAT 237
Query 336 GGATACTTTACCTTCCACAAAGTGCCAGCGGGGACTCATCTGATTGAAGTTTATGCACTG 395
||||||||||| || ||| ||||||| || || |||||| |||||||||| | |||| ||
Sbjct 238 GGATACTTTACTTTTCACGAAGTGCCTGCTGGAACTCATTTGATTGAAGTATCTGCAATG 297
Query 396 GGCTACTTCTTCTCCCCAGTGCGAGTTGATGTTAGTGCTCGGCATCGTGGCAAGGTTCAA 455
||||||||||| || || || ||| | |||||||||||||||||||||||||||||||||
Sbjct 298 GGCTACTTCTTTTCTCCGGTACGAATAGATGTTAGTGCTCGGCATCGTGGCAAGGTTCAA 357
Query 456 GCAACACTTACAGAAACCAGAAGGAGTCTTACTGAGCTGGTTTTGGAGCCATTGCGGGCA 515
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct 358 GCAACACTAACAGAAACCAGGAGGAGTCTTACTGAGCTGGTTTTGGAGCCATTGAGGGAA 417
Query 516 GAGCAATACTACGAGATGCGAGAACCTTTCT-C-TGTAATGTCAATTGTGAAAAGTCCAA 573
||||||||||| ||||| ||||| |||||| | | | |||| || ||||||||||| |
Sbjct 418 GAGCAATACTATGAGATCCGAGAGCCTTTCAACATTT--TGTCGATCGTGAAAAGTCCGA 475
Query 574 TGGGTCTTATGGTGGGATTCATGGTCGTTGTCGTGTTCTTAATGCCTAAGTTGATGGAAA 633
||||||| ||||||||||||||||| ||||| |||||| ||||||| || || |||||||
Sbjct 476 TGGGTCTCATGGTGGGATTCATGGTTGTTGTTGTGTTCCTAATGCCCAAATTAATGGAAA 535
Query 634 ACATAGATCCCGAGGAAATGAAG-AGCGCACAAGAGCAGATGAGAAGCCAAGGAGTGCCT 692
|||||||||| ||||| |||||| | ||||||||| | ||||| || ||||| ||||||
Sbjct 536 ACATAGATCCAGAGGAGATGAAGCAA-GCACAAGAGGAAATGAGGAGACAAGGCGTGCCT 594
Query 693 TCACTCACTAGCTTGTTACC 712
|| ||||| |||||||||||
Sbjct 595 TCGCTCACGAGCTTGTTACC 614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38656637838
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5