BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32130.1 Length=1039 Score E Sequences producing significant alignments: (Bits) Value Ahg944752 jgi|Araly1|944752|scaffold_700981.1 985 0.0 Ahg899968 jgi|Araly1|899968|Al_scaffold_0004_618 568 4e-161 > Ahg944752 jgi|Araly1|944752|scaffold_700981.1 Length=668 Score = 985 bits (533), Expect = 0.0 Identities = 624/665 (94%), Gaps = 18/665 (3%) Strand=Plus/Plus Query 99 GATCTGCTGACGAAGACCATGGCGCCGATTTTCAGATCCACTTCCCTTATCGcttt--t- 155 ||||| | ||||| |||||||||||||||| ||||||||||||||||| ||||||| | Sbjct 4 GATCTCCGGACGACGACCATGGCGCCGATTCTCAGATCCACTTCCCTTGTCGCTTTGATC 63 Query 156 -tct--c-----tct-tcttcttcttctttgcttccactcttcCGATCTCATCT--G--- 201 ||| | ||| || ||||||| ||||||||||||||||||||||||||| | Sbjct 64 GTCTGCCAGATTTCTCTCATCTTCTTATTTGCTTCCACTCTTCCGATCTCATCTGGGTCT 123 Query 202 G-GTCTGAGGATAGTTACACGATCACGGGTAGAGTGAGGGTTCCAGCAAGCACCGTGATT 260 | |||||||||||||||||| |||||||||||||| ||| | |||||||||||||||||| Sbjct 124 GAGTCTGAGGATAGTTACACAATCACGGGTAGAGTAAGGATCCCAGCAAGCACCGTGATT 183 Query 261 GGTCATGCAGCTAAATTCTCAAATATCAAAGTTATACTCAACGGTGGACAGCATGTTACT 320 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 184 GGTCATGCAGCTAAATTCTCAAATATCAAAGTTATACTCAATGGTGGGCAGCATGTTACT 243 Query 321 TTCCTCAGGCCGGATGGATACTTTACCTTCCACAAAGTGCCAGCGGGGACTCATCTGATT 380 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 244 TTCCTCAGGCCGGATGGATACTTTACCTTCCACAAAGTGCCAGCTGGGACTCATCTGATT 303 Query 381 GAAGTTTATGCACTGGGCTACTTCTTCTCCCCAGTGCGAGTTGATGTTAGTGCTCGGCAT 440 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 304 GAAGTTTATGCAATGGGCTACTTCTTCTCCCCAGTGCGAGTTGATGTTAGTGCTCGGCAT 363 Query 441 CGTGGCAAGGTTCAAGCAACACTTACAGAAACCAGAAGGAGTCTTACTGAGCTGGTTTTG 500 ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| Sbjct 364 CGTGGAAAGGTTCAAGCAACACTAACAGAAACCAGGAGGAGTCTTACTGAGCTGGTCTTG 423 Query 501 GAGCCATTGCGGGCAGAGCAATACTACGAGATGCGAGAACCTTTCTCTGTAATGTCAATT 560 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 424 GAGCCACTGCGGGCAGAGCAATACTACGAGATGCGAGAACCTTTCTCTGTAATGTCAATT 483 Query 561 GTGAAAAGTCCAATGGGTCTTATGGTGGGATTCATGGTCGTTGTCGTGTTCTTAATGCCT 620 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 484 TTGAAAAGTCCAATGGGTCTTATGGTGGGATTCATGGTCGTTGTCGTGTTCTTAATGCCT 543 Query 621 AAGTTGATGGAAAACATAGATCCCGAGGAAATGAAGAGCGCACAAGAGCAGATGAGAAGC 680 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 544 AAGTTGATGGAAAACATAGATCCAGAGGAAATGAAGAGCGCACAAGAGCAGATGAGAAGC 603 Query 681 CAAGGAGTGCCTTCACTCACTAGCTTGTTACCCGCTAGCCGCTAAGCGTTAACCAACAGT 740 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 604 CAAGGAGTGCCTTCACTCACTAGCTTGCTACCCGCTAGCCGCTAAGCGTTAACCAACAGT 663 Query 741 CCAAG 745 ||||| Sbjct 664 CCAAG 668 > Ahg899968 jgi|Araly1|899968|Al_scaffold_0004_618 Length=636 Score = 568 bits (307), Expect = 4e-161 Identities = 478/560 (85%), Gaps = 14/560 (3%) Strand=Plus/Plus Query 160 tcttcttcttcttctttgcttccactcttcCGAT-CTCATCTGGGTCTGAGGATAGTTAC 218 ||| |||| |||||||| ||||||| | ||| || ||| ||||||||||||||||||||| Sbjct 62 TCTGCTTCATCTTCTTTACTTCCAC-CCTCCCATGCTCTTCTGGGTCTGAGGATAGTTAC 120 Query 219 ACGATCACGGGTAGAGTGAGGGTTCCAGCAAGCACCGTGATTGGTCATGCAGCTAAA-TT 277 || || || |||||||| | | ||||| |||||| ||||||||||| ||| ||| || Sbjct 121 ACCATTACTGGTAGAGTCAAGATTCCACCAAGCAATGTGATTGGTCACATAGC-AAAGTT 179 Query 278 CTCAAATATCAAAGTTATACTCAACGGTGGACAGCATG-TTAC-TTTCCTCAGGCCGGAT 335 ||| ||| |||||||||||||||| ||||||||| | | |||| ||| |||||||| ||| Sbjct 180 CTCTAATGTCAAAGTTATACTCAATGGTGGACAG-AAGATTACGTTT-CTCAGGCCTGAT 237 Query 336 GGATACTTTACCTTCCACAAAGTGCCAGCGGGGACTCATCTGATTGAAGTTTATGCACTG 395 ||||||||||| || ||| ||||||| || || |||||| |||||||||| | |||| || Sbjct 238 GGATACTTTACTTTTCACGAAGTGCCTGCTGGAACTCATTTGATTGAAGTATCTGCAATG 297 Query 396 GGCTACTTCTTCTCCCCAGTGCGAGTTGATGTTAGTGCTCGGCATCGTGGCAAGGTTCAA 455 ||||||||||| || || || ||| | ||||||||||||||||||||||||||||||||| Sbjct 298 GGCTACTTCTTTTCTCCGGTACGAATAGATGTTAGTGCTCGGCATCGTGGCAAGGTTCAA 357 Query 456 GCAACACTTACAGAAACCAGAAGGAGTCTTACTGAGCTGGTTTTGGAGCCATTGCGGGCA 515 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||| | Sbjct 358 GCAACACTAACAGAAACCAGGAGGAGTCTTACTGAGCTGGTTTTGGAGCCATTGAGGGAA 417 Query 516 GAGCAATACTACGAGATGCGAGAACCTTTCT-C-TGTAATGTCAATTGTGAAAAGTCCAA 573 ||||||||||| ||||| ||||| |||||| | | | |||| || ||||||||||| | Sbjct 418 GAGCAATACTATGAGATCCGAGAGCCTTTCAACATTT--TGTCGATCGTGAAAAGTCCGA 475 Query 574 TGGGTCTTATGGTGGGATTCATGGTCGTTGTCGTGTTCTTAATGCCTAAGTTGATGGAAA 633 ||||||| ||||||||||||||||| ||||| |||||| ||||||| || || ||||||| Sbjct 476 TGGGTCTCATGGTGGGATTCATGGTTGTTGTTGTGTTCCTAATGCCCAAATTAATGGAAA 535 Query 634 ACATAGATCCCGAGGAAATGAAG-AGCGCACAAGAGCAGATGAGAAGCCAAGGAGTGCCT 692 |||||||||| ||||| |||||| | ||||||||| | ||||| || ||||| |||||| Sbjct 536 ACATAGATCCAGAGGAGATGAAGCAA-GCACAAGAGGAAATGAGGAGACAAGGCGTGCCT 594 Query 693 TCACTCACTAGCTTGTTACC 712 || ||||| ||||||||||| Sbjct 595 TCGCTCACGAGCTTGTTACC 614 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38656637838 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5