BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32140.1
Length=1591
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491520 jgi|Araly1|491520|fgenesh2_kg.7__953__AT4G32140.1 2418 0.0
> Ahg491520 jgi|Araly1|491520|fgenesh2_kg.7__953__AT4G32140.1
Length=1530
Score = 2418 bits (1309), Expect = 0.0
Identities = 1483/1561 (95%), Gaps = 35/1561 (2%)
Strand=Plus/Plus
Query 3 CCCCGTTCCTTCCCTCGCGGTTACTCTTCCGTTTTATGtttttttttCTGAGATGGTCAA 62
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 CCCCGTTCCTTCCCTCGCGGTTACTCTTCCGTTTTATG--TTTTTTTCTGAGATGGTCAA 58
Query 63 TTTTCCCGTCGTCTCTGAATTTTCCCTTTTTCTCTTCTTCACTCCACCGCCTTCCCCGAA 122
||||| |||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 59 TTTTCTCGTCATCTCTGAATTTTCCCTTTTTCTCTTCTTCACTCCA---------CCG-- 107
Query 123 TCACTTCCTCTGCCTGATCTAATTCAATCTCCTTCCTAGCTCAAAGAAGTCAATTTACAC 182
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 -C-CTTCCTCTGCCTGATCTAATTCAATCTCCTTCCTAGCTCAAAGAAGTCAATTTACAC 165
Query 183 GAGCAGATCTCTGCACTCAAAACTCCTGGA---TCTTCATTTCTGGGCTTCAATTTAGAG 239
|| ||||||||||||||| |||||||||| |||||||||||||| ||||||||||||
Sbjct 166 GACCAGATCTCTGCACTC-TAACTCCTGGATCTTCTTCATTTCTGGGTTTCAATTTAGAG 224
Query 240 tttttttATATTAAATGGGTTGGAGATACAAAGCTGGTCTGTTCTTGATTGGCACTGTTG 299
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 --TTTTTAT-TT-AATGGGTTGGAGATACAAAGCTGGTCTGTTCTTGATTGGCACTGTTG 280
Query 300 TTATCATATGGGTCACCTCCGCTGAAGTTACTCAGGATATCTTTACAGCCTATAAGCAGC 359
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 281 TTATCATATGGGTCACCTCTGCTGAAGTTACTCAGGATATCTTTACAGCCTATAAGCAGC 340
Query 360 CATTTGCAGTCACATATCTTGGAGCTTCTCTTATGATTGTTTACCTTCCCGTTGCATTCC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 CATTTGCAGTCACATATCTTGGAGCTTCTCTTATGATTGTTTACCTTCCCGTTGCATTCC 400
Query 420 TCAAAGACTGGCTTTGTCGATATTTAGATCGACGCTCTTCCAAATCCAATAAAATTCCCG 479
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 401 TCAAAGACTGGCTTTGTCGATATTTAGATCGACGCTCTTCCAAATCCAGTAAAGTTCCCG 460
Query 480 CTTTGACCGATGATTCCTCGGTTGAGCTCGGTTCTCCTTTGAGGCATAAAATCATTGAAA 539
||||||||||||| || || | | | ||||||||||||| |||||||||||||||||
Sbjct 461 CTTTGACCGATGAGTCTTC---T--G-TTGGTTCTCCTTTGAAGCATAAAATCATTGAAA 514
Query 540 TGGGACTTCAAGGGACTATAACTAAGAAAGATAGTGAGGAACACCTTTCATCCCATGAAG 599
||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 515 TGGGACTTCAAGGGACTATAACTAAGAAAGATAGTGAGGAACACCTTTCCTCACAT---G 571
Query 600 AAGAAGATGAGAGACCCTTGATCGGTAAAGTTAGAGAAGAAGTGCAGACTCTGAAACAGA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 AAGAAGATGAGAGACCCTTGATCGGTAAAGTTAGAGAAGAAGTGCAGACTCTGAAACAGA 631
Query 660 GGAAAGAGATCACGACTAAGCAGATTGCAATGTACGGCCTTTACCTCGCACCAATTTGGT 719
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 632 GGAAAGAGATCACGACTAAGCAGATTGCAATGTACGGGCTTTACCTCGCACCAATTTGGT 691
Query 720 TTGTAACAGAGTATCTGTCCAATGCTGCTCTTGCTCGTACAAGTGTGGCAAGTACTACTG 779
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 692 TTGTAACAGAGTATCTGTCCAATGCTGCTCTTGCTCGTACAAGTGTGGCAAGCACTACTG 751
Query 780 TATTGTCTTCAACCTCGGGACTGTTTACTCTGTTCATTGGTGTATTTTTGGGCCAAGATA 839
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 752 TATTGTCTTCAACCTCGGGACTGTTTACTCTTTTCATTGGTGTATTTTTGGGCCAAGATA 811
Query 840 CCTTGAACCTGTCGAAAGTAGTGGCTGTATTTGTCAGCATGGCTGGTGTGGTCATGACGA 899
| || ||| |||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 812 CTTTAAACTTGTCAAAAGTAGTTGCTGTATTTGTCAGCATGGCTGGGGTGGTCATGACGA 871
Query 900 CGCTAGGGAAAACTTGGGCTTCTGATGAGTCGCAATTAAATTCTTCACTCAACGGGGAAC 959
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 872 CGCTCGGGAAAACTTGGGCTGCTGATGAGTCGCAATTAAATTCTTCACTCAACGGGGAAC 931
Query 960 GATCCCTTATGGGAGATCTTTTTGGGCTTCTCTCTGCGGTCTCTTATGGACTTTTTACAG 1019
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 932 GGTCCCTTATGGGAGATCTTTTTGGGCTTCTCTCTGCGGTCTCTTATGGACTATTTACAG 991
Query 1020 TGCTTCTTAAGAAGTTTGCCGGTGAAGAAGGAGAAGGGGTTGATGTCCAAAAGCTGTTTG 1079
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 992 TGCTTCTTAAGAAGTTTGCCGGTGAAGAAGGAGAAGGGGTTGATGTGCAAAAGTTGTTTG 1051
Query 1080 GATACATAGGATTATTTACACTTGTTGCTCTCTGGTGGCTTGTGTGGCCATTGACAGCAT 1139
||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1052 GATACATAGGATTGTTCACACTTGTTGCTCTCTGGTGGCTTGTGTGGCCGTTGACAGCAT 1111
Query 1140 TAGGGATCGAACCAAAGTTTACCATACCACACTCTGTGAAAGTTGATGAAGTTGTCTTAG 1199
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1112 TAGGGATCGAACCCAAGTTTACCATACCACACTCTGTGAAAGTTGATGAAGTTGTCTTGG 1171
Query 1200 CCAACGGTTTCATCGGAAGTGTCCTCTCTGACTATTTTTGGGCACTTTCTGTGGTGTGGA 1259
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 CCAACGGTTTCGTTGGAAGTGTCCTCTCTGACTATTTTTGGGCACTTTCTGTGGTGTGGA 1231
Query 1260 CAACTCCGCTGGTAGCGACACTGGGCATGTCTCTCACAATTCCGCTTGCGATGGTTGCTG 1319
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 CAACTCCGCTGGTAGCAACACTGGGCATGTCTCTCACAATTCCGCTTGCGATGGTTGCTG 1291
Query 1320 ACATGATGATCCATGGTCGTCATTATTCAGCCATTTACATTCTTGGCTCTACTCAGGTGT 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 ACATGATGATCCATGGTCGTCATTATTCAGCCATTTACATTCTTGGCTCTACTCAGGTGT 1351
Query 1380 TTGCTGGATTCGTAATAGCTAACATATCGGATTTGTTCTCAAAGAAGCTTGGATTGTAGC 1439
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1352 TTGCTGGATTCGTAATAGCTAACATATCGGATTTGTTCTCAAAGAAGCTTGGTTTGTAGC 1411
Query 1440 ACATATGATTCtttttt-tttGGTTGTTTTGTGGTATTTCTGGGTAGAAAATGTATCCTA 1498
||||||||||| ||||| |||| |||||| |||||||||||||||||||||||| |||||
Sbjct 1412 ACATATGATTCATTTTTGTTTGTTTGTTT-GTGGTATTTCTGGGTAGAAAATGTGTCCTA 1470
Query 1499 GAAGATTCTTGGTTGGAATTGAAAGCTAAAAGGGAATTTTCCCTGTTTAATGGATGAAAG 1558
|||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1471 GAAGATTCTTGGTTTGAACTGAAAGCTAAAAGGGA-TTTTCCCTGTTTAATGGATGAAAG 1529
Query 1559 A 1559
|
Sbjct 1530 A 1530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59611233425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5