BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32150.1
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944750 jgi|Araly1|944750|scaffold_700979.1 1404 0.0
> Ahg944750 jgi|Araly1|944750|scaffold_700979.1
Length=884
Score = 1404 bits (760), Expect = 0.0
Identities = 853/896 (95%), Gaps = 14/896 (2%)
Strand=Plus/Plus
Query 207 GGCAGGGGGATCGACGACGGAGATGGCGATTCTGTACGCCCTCGTGGCTCGTGGCACGGT 266
|||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 GGCAAGGGGA-CGACGACGGAGATGGCGATTCTGTACGCACTCGTGGCTCGTGGCACGGT 59
Query 267 GGTTCTTTCTGAGTTCACCGCCACCTCTACGAATGCGAGCACCATCGCCAAACAGATCCT 326
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 60 TGTTCTTTCTGAGTTCACCGCCACGTCTACGAATGCGAGCACCATCGCCAAACAGATCCT 119
Query 327 CGAGAAGGTCCCTGGAGACAACGACAGCAACGTCTCCTACTCTCAGGATCGTTACGTCTT 386
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 120 CGAGAAGGTCCCTGGAAACAACGACAGCAACGTTTCCTACTCTCAGGATCGTTACGTCTT 179
Query 387 CCACGTTAAACGCACCGATGGCCTCACCGTTCTCTGTATGGCCGAAGAAACCGCCGGAAG 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CCACGTTAAACGCACCGATGGCCTCACCGTTCTCTGTATGGCCGAAGAAACCGCCGGAAG 239
Query 447 GAGAATTCCTTTTGCCTTTTTGGAGGATATTCACCAGAGATTCGTACGGACTTATGGCAG 506
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 GAGAATTCCTTTTGCCTTTCTGGAGGATATTCACCAGAGATTCGTACGGACGTATGGCAG 299
Query 507 GGCTGTTCATACAGCACTAGCTTATGCAATGAATGAGGAATTCTCTAGAGTTCTCAGTCA 566
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGCTGTTCATACAGCACAAGCTTATGCAATGAATGAGGAATTCTCTAGAGTTCTCAGTCA 359
Query 567 GCAGATTGACTATTACTCTAATGATCCTAATGCCGATAGGATTAATCGTATTAAGGGTGA 626
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 GCAGATTGAGTATTACTCTAATGATCCTAATGCCGATAGGATTAATCGGATTAAGGGTGA 419
Query 627 AATGAATCAGGTGCGGGGTGTCATGATAGAAAACATTGACAAAGTCCTAGATAGAGGTGA 686
|||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 420 AATGAATCAGGTGCGGGGTGTCATGATAGAGAATATTGACAAAGTTCTAGATAGAGGTGA 479
Query 687 ACGTTTGGAGCTTCTTGTCGATAAAACCGCCAATATGCAGGGGAATACATTCCGGTTCAG 746
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 480 ACGTTTGGAGCTTCTTGTCGATAAAACCGCCAATATGCAGGGAAATACATTCCGTTTCAG 539
Query 747 AAAGCAAGCTCGTCGTTTTAGAAGCAACGTCTGGTGGAGAAACTGCAAGCTCACGGTCCT 806
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 AAAGCAAGCTCGTCGTTTTAGAAGCAACGTCTGGTGGAGAAATTGCAAGCTCACGGTCCT 599
Query 807 CTTAATACTACTACTACTGGTGATCATATACATTGCAGTGGCCTTTCTCTGCCACGGACC 866
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 CTTAATACTACTACTACTGGTGATCATATACATAGCAGTGGCCTTTCTCTGCCACGGACC 659
Query 867 TACTCTACCATCTTGCATTTAAGTGCATCTGTCTCTTAAGGAATCCATCCCGATTCTGCG 926
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 660 TACTCTACCATCTTGCATTTAAGTGCATCAGTCTCTTAAGGAATCCATCCCGATTCTGCG 719
Query 927 CGTTGCCACGACTT-TTTATCTCCTCATCTGATTGTAAACCTTGTGTTT-TCCTGAGCAT 984
|||||||| |||| ||| |||||||| |||||||||||| || ||||| | | |||| |
Sbjct 720 TGTTGCCACAACTTCTTT-TCTCCTCACCTGATTGTAAACGTTCTGTTTCTTC-GAGC-T 776
Query 985 TTTCATGTGGCTTAAAAAGCTTATGTTTCCAACTCACGTATATGAAAAAGTATACTTATT 1044
||| | | ||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 777 TTT--T-T-----AAAAAGCTTATGTTTTCAACTCACGTATATGAAGAAGTATACTTATT 828
Query 1045 TATAGAGCAATGTAAAAGCTCATTGCTTTGCGAAGTGTGTGAATCTTTGTTGACAT 1100
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 829 TATAGAGCAATGTAAAAGCTCATTGCTTTGCAAAGTGTGTGAATCTTTGTTGTCAT 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44108214969
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5