BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32170.1
Length=1574
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491517 jgi|Araly1|491517|fgenesh2_kg.7__950__AT4G32170.1 2435 0.0
Ahg352944 jgi|Araly1|352944|fgenesh1_pg.C_scaffold_7000117 1511 0.0
Ahg952035 jgi|Araly1|952035|scaffold_31100001.1 761 0.0
Ahg331566 jgi|Araly1|331566|fgenesh1_pm.C_scaffold_8000909 667 0.0
> Ahg491517 jgi|Araly1|491517|fgenesh2_kg.7__950__AT4G32170.1
Length=1558
Score = 2435 bits (1318), Expect = 0.0
Identities = 1481/1561 (95%), Gaps = 5/1561 (0%)
Strand=Plus/Plus
Query 1 TGCCTTACTCCAATGGCTTCAATAAGCTTACTTCAAGTTTCCGTAGCTATCCTTTGCTTT 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 TGCCTTACTCCAATGGCTTCAATAAGCTTACTTCAAGTTTCCGTAGCCATCCTTTGCTTT 60
Query 61 CTCATCCTTCATTACTTTCTCTTCAAGAAACCTCATGGCCGGTACCCTAGGAACTGGCCG 120
||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 61 TTCATCCTCCATTACTTTCTCTTCAAGAAACCTCATGGCCGGTTCCGTAGGAACTGGCCG 120
Query 121 GTTCTCCGGATGCTACCCGCTATGCTCAAGGCGCTTCACCGAATCTACGACTACAGCGTG 180
|||||||||||||| |||||| |||| || ||||| ||||| ||||| |||||||||||
Sbjct 121 GTTCTCCGGATGCTCCCCGCTCTGCTTAAAGCGCTCCACCGGATCTATGACTACAGCGTT 180
Query 181 AAGATTCTCGAAACCTCTGACTTGACCTTTCCATTCAAAGGACCGCGGTTCACAGGAATG 240
|||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||
Sbjct 181 AAGATTCTCGAAACCTCTGACTTGACGTTTCCATTCAAAGGACCGCGGTTTGCTGGAATC 240
Query 241 GATATGTTGCTCACGGTTGATCCAGCTAACATTCATCATATAATGAGCTCAAATTTCTCA 300
||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 GATATGTTGATCACAGTTGATCCAGCTAACATTCATCATATAATGAGCTCAAGTTTCTCA 300
Query 301 AACTACATCAAAGGACCGGAGTTCCAAGATGTTTTTGATGTGTTAGGAGACAGTTTCATC 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AATTACATCAAAGGACCGGAGTTCCAAGATGTTTTTGATGTGTTAGGAGACAGTTTCATC 360
Query 361 ACCACGGACTCGGAGCTATGGAAGAATATGAGGAAATCTTATCAAGCCATGCTCCATAGT 420
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 361 ACCACGGACTCGGAGCTATGGAAGAATATGAGGAAGTCTTATCAAGCCATGCTCCATACT 420
Query 421 CAAGAGTTTCAAAGGTTTTCAATGAGTACCATGACAAGTAAACTCAAGTACGGTCTTGTT 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 421 CAAGAGTTTCAAAGGTTTTCAATGAGTACCATGACAAGTAAACTCAAGGACGGGCTTGTT 480
Query 481 CCCCTTCTTAATCATTTTGCTGAGGAAGGAACAACTCTTGACTTGCAAAGCGTCTTCGGG 540
|||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||
Sbjct 481 CCCCTTCTTAATCATTTTGCAGAGGAAGGAACAACTCTTGACTTGCAAGGCGTGTTCGGG 540
Query 541 AGGTTCACTTTCGATACAATTTTCATCCTTGTAACTGGTTCTGATCCTAGATCTCTCTCC 600
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 541 AGGTTCACTTTCGATACAATCTGCATCCTTGTAACTGGTTCTGATCCTAGATCTCTCTCC 600
Query 601 ATTGAAATGCCTGAAGACGAATTTGCTAAAGCTCTCGACGATGTTGGAGAAGGGATTCTT 660
||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||
Sbjct 601 ATTGAAATGCCTGGGGATGAATTTGCTAAAGCTCTCGACGATGTTGGAGAAGCGATTCTT 660
Query 661 TATAGGCATTTTAAACCAAGGTTCTTGTGGAAGCTGCAAAACTGGATAGGATTCGGACAA 720
||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 661 TATAGGCATGTTAAACCAAGATTCTTGTGGAAGCTGCAAAACTGGATGGGATTCGGACAA 720
Query 721 GAGAAGAAGCTCACTGAAGCTAATGCAACTTTTGACCGCGTGTGTGCCAAATACATATCA 780
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAGAAGAAGCTGATTGAAGCTAATGCAACTTTTGACCGCGTGTGTGCCAAATACATATCA 780
Query 781 GCCAAGAGAGAAGAGATTAAAAGATCACAAGGGACTTCCAATGGAGGAAGTCAGGATCTT 840
||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||
Sbjct 781 GCCAAGAGAGAAGAGATTAAAAGATCACAAGGGGTTTCCAATGGAGAAAGTGAGGATCTT 840
Query 841 TTAACTTCCTTCATAAAGCTAGACACGACCAAGTACAAGCTCTTGAATCCGAGTGACGAT 900
||||||||| ||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 841 TTAACTTCCATCATAAAGCTAGATACAACCAAGTACAAGCTCTTGAATCCAAGTGACGAT 900
Query 901 AAGTTCCTTAGAGACAACATCTTAGCTTTCATTCTAGCGGGAAGAGACACAACAGCCACC 960
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 AAGTTCCTTAGAGACAATATCTTAGCTTTCATTCTCGCGGGAAGAGACACAACAGCCACC 960
Query 961 GCTCTCTCTTGGTTCTTCTGGCTTCTCTCTGAAAATCCACATGTGGTAGCCAAGATTCAT 1020
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 961 GCTCTCTCTTGGTTCTTCTGGCTTCTCTCTGAAAATCCACAAGTGGTAGCCAAGATTCGT 1020
Query 1021 CAAGAGATCAACATCAACACTGATCTATCAAGAACAGGAAATAGCCAAGAGAATGTAGAC 1080
||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 1021 CAAGAGATCAACAACAACACGGATCTATCAAGAACCGGAAATAGCCAAGAGAATGTGGAC 1080
Query 1081 AAGTTGGTGTATTTACATGGTGCGTTGTGTGAAGCAATGAGACTCTACCCACCAGTTTCC 1140
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AAGTTGGTGTATTTACACGGTGCGTTGTGTGAAGCAATGAGACTCTACCCACCAGTTTCC 1140
Query 1141 TTCGGACGCAAGTCTCCAATCAAATCAGATGTGCTTCCAAGTGGCCATAAAGTTGATGCA 1200
||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1141 TTCGGGCGCAAGTCTCCAATCAAATCAGATGTGCTTCCAAGTGGGCATAAAGTCGATGCA 1200
Query 1201 AACTCTAAGATTATTATCTGTCTTTATGCATTGGGGAGGATGCGAGCGGTTTGGGGAGAA 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AACTCTAAGATTATTATCTGTCTTTATGCATTGGGGAGGATGCGAGCGGTTTGGGGAGAA 1260
Query 1261 GATGCATCGCAGTTCAAGCCAGAGAGATGGATTTCGGAGAATGGAGGCATAAAACATGAG 1320
|| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GACGCAACGCAATTCAAGCCAGAGAGATGGATTTCGGAGAATGGAGGCATAAAACATGAG 1320
Query 1321 CCTTCCT-TCAAGTTTTT-GTCGTTTAATGCCGGTCCAAGAACTTGTCTAGGTAAACATC 1378
|| |||| | |||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 1321 CCATCCTAT-AAGTTTTTAG-CATTTAATGCCGGTCCAAGAACTTGTCTAGGTAAACATT 1378
Query 1379 TAGCTATGACTCAAATGAAGATAGTGGCAGTGGAGATATTACGAAACTACGACATTAAGG 1438
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||
Sbjct 1379 TAGCTATGACTCAAATGAAGATAATGGCAGTGGTGATATTACGAAACTACGACATCAAGG 1438
Query 1439 TTCTCCAAGGACAGAAGATTGTGCCAGCTCTTGGTTTTATATTGTCAATGAAACATGGTC 1498
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1439 TTCTCCAAGGGCAGAAGATTGTGCCAGCTCTTGGCTTTATATTGTCAATGAAACATGGTC 1498
Query 1499 TTCAAATCACTGTTACTAAGAGATGTTCTGCTTGAAATTATTCATGTATTAAATaaaaaa 1558
|| ||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||||||
Sbjct 1499 TTAAAATCACAGTTACTAAGAGATGTTCTGCTTGAACTTATTCATGTACTAA-TAAAAAA 1557
Query 1559 a 1559
|
Sbjct 1558 A 1558
> Ahg352944 jgi|Araly1|352944|fgenesh1_pg.C_scaffold_7000117
Length=2985
Score = 1511 bits (818), Expect = 0.0
Identities = 1282/1501 (85%), Gaps = 52/1501 (3%)
Strand=Plus/Plus
Query 57 CTTTCTCATCCTTCATTACTTT-C-TCTTCAA-GAAAC--CTCATGGCCGG-TACCCTAG 110
|||||||||||||| ||| ||| | ||||||| |||| ||||||||||| | ||||||
Sbjct 1495 CTTTCTCATCCTTCTTTAATTTACTTCTTCAACAAAACAACTCATGGCCGGCT-CCCTAG 1553
Query 111 GAACTGGCCGGTTCTCCGG-ATGCTACCC-GCTATGCTCAAGGCGCTTCACCGAATCTAC 168
||||||||||||||| ||| ||||| ||| | | ||||| || ||| | ||| |||||
Sbjct 1554 GAACTGGCCGGTTCT-CGGTATGCTCCCCTG-TCTGCTCGCGGTGCTCCGCCGGATCTAT 1611
Query 169 GACTACAGCG-TGAAGATTCTCGAAACCTCTGACTTGACCTTTCCATTCAAAGGACCGCG 227
||||| | || || ||||||| |||| ||| || ||||| ||| ||||||| |||||||
Sbjct 1612 GACTATATCGTTG-AGATTCTTGAAATCTCCGATTTGACATTTTCATTCAAGGGACCGCT 1670
Query 228 GTTCACAGGAATGGATATGTTGCTCACGGTTGATCCAGCTAACATTCATCATATAATGAG 287
|||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1671 GTTCGCTGGAATGGATATGTTGCTCACGGTTGATCCTGCTAACATTCATCATATAATGAA 1730
Query 288 CTCAAATTTCTCAAACTACATCAAAGGACCGGAGTTCCAAGATGTTTTTGATGTGTTAGG 347
|||||| |||||||| |||||||||||| | || ||| |||| ||||||||||| || ||
Sbjct 1731 CTCAAACTTCTCAAATTACATCAAAGGATCTGACTTCAAAGAAGTTTTTGATGTTTTTGG 1790
Query 348 AGACAG-TTTCATCACCACGGACTCGGAGCTATGGAAGAATATGAGGAAATCTTATCAAG 406
|||| | || |||||||| ||||| || |||||||||||| ||||||| ||||||||||
Sbjct 1791 AGACGGAATT-ATCACCACAGACTCTGATCTATGGAAGAATCTGAGGAAGTCTTATCAAG 1849
Query 407 CCATGCTCCAT-AGTCAAGAGTTTCAAAGGTTTTCAATGAGTACCATGACAAGTAAACTC 465
| ||||||||| | ||||| |||||||| ||||||| ||||||||| | ||||||||||
Sbjct 1850 CAATGCTCCATCA-TCAAGCGTTTCAAAAGTTTTCATTGAGTACCACAAGAAGTAAACTC 1908
Query 466 AAGTACGGTCTTGTTCCCCTTCTTAATCATTTTGCTGAGGAAGGAACAACTCTTGACTTG 525
| | |||| |||||||| ||||||||||||||||| ||||||||||||| | | || |||
Sbjct 1909 ATGGACGGGCTTGTTCCTCTTCTTAATCATTTTGCAGAGGAAGGAACAATTGTGGATTTG 1968
Query 526 CAAAG-CGTCTTCGGGAGGTTCACTTTCGATACAATTTTCATCCTTGTAACTGGTTCTGA 584
| ||| ||| |||||||||||||||||||||| | || |||||| |||| |||||||
Sbjct 1969 C-AAGATGTCCTCGGGAGGTTCACTTTCGATACGGTCTTAATCCTTATAACCAGTTCTGA 2027
Query 585 TCCTAGATCTCTCTCCATTGAAATGCCTGAAGACGAATTTGCTAAAGCTCTCGACGATGT 644
|||||||||||| ||||||||||||| ||| || ||||| ||||||||||||||||||||
Sbjct 2028 TCCTAGATCTCTTTCCATTGAAATGCATGAGGATGAATTAGCTAAAGCTCTCGACGATGT 2087
Query 645 TGGAGAAGGGATTCTT-TATAGGCATTTTAAACCAAGGTTCTTGTGGAAGCTGCA-AAAC 702
||||||||||||| || | ||||||| ||||||||| ||||||||||||||||| |||
Sbjct 2088 TGGAGAAGGGATT-TTGTTTAGGCATGTTAAACCAAAATTCTTGTGGAAGCTGCAGAAA- 2145
Query 703 TGGATAGGATTCGGACAAGAGAAGAAGCTCACTGAAGCTAATGCAACTTTTGACCGCGTG 762
||||| ||||| ||||| ||||||||| | |||||||||||||||||||||||||| ||
Sbjct 2146 TGGATGGGATTGGGACACGAGAAGAAGATGACTGAAGCTAATGCAACTTTTGACCGTGTT 2205
Query 763 TGTGCCAAATACATATCAGCCAAGAGAGAAGAGATTAAAAGATCAC-AAGG------G-- 813
|| || ||||| ||||||| |||||||||||||||| ||||||| |||| |
Sbjct 2206 TGCGCGAAATATATATCAGATAAGAGAGAAGAGATTATCAGATCACAAAGGTTTAATGAT 2265
Query 814 ACTTCCAATGGAGGAAGTC---AGGATCTTTTAACTTCCTTCATAAAGCTAGACACGACC 870
| |||| |||||| ||||| ||||||||||| ||||||||||||||||||| || |||
Sbjct 2266 ATTTCCTATGGAGAAAGTCATGAGGATCTTTTATCTTCCTTCATAAAGCTAGATACAACC 2325
Query 871 AAGTACAAGCTCTTGAATCCGAGTGACGATAAGTTCCTTAGAGACAACATCTTA--GCTT 928
|||||||||||||||||| ||||||| ||||||||||| |||||| || | ||| ||||
Sbjct 2326 AAGTACAAGCTCTTGAATTCGAGTGAAGATAAGTTCCTCAGAGAC-AC-TATTATGGCTT 2383
Query 929 TCATTCTAGCGGGAAGAGACACAACAGCCACCGCTCTCTCTTGGTTCTTCTGGCTTCTCT 988
|||||||||||||||| || ||||| || | |||||| |||||||||||||||||||||
Sbjct 2384 TCATTCTAGCGGGAAGGGATACAACTTCCTCTGCTCTCACTTGGTTCTTCTGGCTTCTCT 2443
Query 989 CTGAAAATCCACATGTGGTAG-CCAAGATTCATCAAGAGATCAACATCAACACT-GATCT 1046
|||||| || || ||||| | ||||||||| |||||||| |||||||| | ||||
Sbjct 2444 CTGAAAGCCCTCAAGTGGT-GACCAAGATTCGCCAAGAGAT---CATCAACA-TAAATCT 2498
Query 1047 ATC-AAGAACAGGAAATAGCCAAGAGAATGTAGACAAGTTGGTGTATTTACATGGTGCGT 1105
||| ||||| |||||| ||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 2499 ATCAAAGAA-TGGAAATGGCCAAGAGAATTTAGACAAGTTGGTGTATTTACATGGTGTGT 2557
Query 1106 TGTGTGAAGCAATGAGACTCTACCCACCAGTTTCCTTCGGACGCAAGTCTCCAATCAAAT 1165
|||||||||||||||||||||| |||||||||||||| || ||||||||| | |||||||
Sbjct 2558 TGTGTGAAGCAATGAGACTCTATCCACCAGTTTCCTTTGGGCGCAAGTCTTCTATCAAAT 2617
Query 1166 CAGATGTGCTTCCAAGTGGCCATAAAGTTGATGCAAACTCTAAGATTATTATCTGTCTTT 1225
|||||||||||||||||||||||| ||| || ||||||||||||||||| ||||| |||
Sbjct 2618 CAGATGTGCTTCCAAGTGGCCATAGAGTAGAAGCAAACTCTAAGATTATCATCTGCCTTA 2677
Query 1226 ATGCATTGGGGAGGATGCGAGCGGTTTGGGGAGAAGATGCATCGCAGTTCAAGCCAGAGA 1285
| || |||||||||||| |||||||||||||||| || |||| | | |||||||||||||
Sbjct 2678 AAGCGTTGGGGAGGATGAGAGCGGTTTGGGGAGATGACGCATTGGAATTCAAGCCAGAGA 2737
Query 1286 GATGGATTTCGGAGAATGGAGGCATAAAACATGAGCCTTCCTTCAAGTTTTTGTCGTTTA 1345
||||| |||| ||||| ||| || ||| ||||||||| ||||||||||| || |||||||
Sbjct 2738 GATGGGTTTCTGAGAAGGGAAGCTTAAGACATGAGCCCTCCTTCAAGTTCTTATCGTTTA 2797
Query 1346 ATGCCGGTCCAAGAACTTGTCTAGGTAAACATCTAGCTATGACTCAAATGAAGATAGTGG 1405
| |||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||
Sbjct 2798 TTTCCGGTCCAAGAACTTGTCTAGGAAAACATTTAGCTATGACTCAAATGAAGATGGTGG 2857
Query 1406 CAGTGGAGATATTACGAA-ACTACGACATTAAGGTTCTCCAAGGACAGAAGATTGTGCCA 1464
| ||||||||||||| || |||| |||||||||||| | |||| || ||||||| ||||
Sbjct 2858 CCGTGGAGATATTAC-AACACTATGACATTAAGGTTATTAAAGGGCAAAAGATTGAGCCA 2916
Query 1465 GCTCTTGGTTTTATATTGTCAATGAAACATGGTCTTCAA-ATCACTGTTACTAAGAGATG 1523
| |||||||||||||||||| ||||| ||||| ||| | ||||| |||||||||| ||
Sbjct 2917 GTTCTTGGTTTTATATTGTCCATGAAGCATGGACTT-AGGATCACAATTACTAAGAGGTG 2975
Query 1524 T 1524
|
Sbjct 2976 T 2976
> Ahg952035 jgi|Araly1|952035|scaffold_31100001.1
Length=1591
Score = 761 bits (412), Expect = 0.0
Identities = 1171/1523 (77%), Gaps = 109/1523 (7%)
Strand=Plus/Plus
Query 3 CCTTACTCCAATGGCTTCAATAAGCTTACTTCAAGTTTCCGTAGCTATCCTTTGCTTTCT 62
|||| ||| |||||||||| ||||||| || ||||||| |||| ||| ||||||||||
Sbjct 17 CCTT-CTCTTATGGCTTCAACAAGCTTAATTGGAGTTTCCATAGCCATCATTTGCTTTCT 75
Query 63 CATCCTTCATTACTTTCTCTTCAAGAAACCTCATGGCCGGTACC--CT-AGGAACTGGCC 119
|||||| ||| ||| |||||||||||||||| | || || || | | ||||||||
Sbjct 76 CATCCTCCATCGCTTCCTCTTCAAGAAACCTCTTTACCAGTTCCTTATAATTAACTGGCC 135
Query 120 GGT-TCTCCGGATGCTACCCGCTATGCTCAAGGCGCTTCACCGAATCTACGACTACAGC- 177
||| | | ||||| | || | | | || || ||| ||||| |||||||||| || |
Sbjct 136 GGTGT-TGGGGATGATTCCGGGTCTTTTCTTGGTGCTCCACCGTATCTACGACTTCA-CT 193
Query 178 GTGAAGATTCTCGAAACCTCTGACTTGACCTTTCCATTCAAAGGACCGCGGTTCACAGGA 237
||| || |||| |||| | | || || || ||||||||||| |||||| ||||| | |||
Sbjct 194 GTGGAGCTTCTTGAAAACACCGAGTTAACATTTCCATTCAAGGGACCGTGGTTCGCTGGA 253
Query 238 ATGGATATGTTGCTCACGGTTGATCCAGCTAACATTCATCATA--TAATGAGCTCAAATT 295
||||||||| ||||||| | |||||||||||| ||| | | || || | | |||||| |
Sbjct 254 ATGGATATGCTGCTCACAGCTGATCCAGCTAATATTTA-C-TACCTAGTAAACTCAAACT 311
Query 296 TCTCAAACTACATCAAAGG-ACCGGAGTTCCAAGATG-TTTTTGATGTGTTAGGAGACAG 353
|||| || | | ||||| || | ||| |||| | | ||||||| || | ||| |
Sbjct 312 TCTCCAATTTTGTTAAAGGTTCC-AACTTCAAAGA-GATCTTTGATGCCTTCGAAGA-TG 368
Query 354 -TTTCA-TCACCACGGACTCG--GAGCTATGGAAGAATATGAGGAAATCTTATCAAGCCA 409
||| | |||| | ||||||| | || |||||||||| |||||||| ||| ||| ||||
Sbjct 369 CTTT-ACTCACAAAGGACTCGTTG-GC-ATGGAAGAATCTGAGGAAAGCTTCTCAGGCCA 425
Query 410 TGCTCCA-TAGTCAAGAGTTTCAAAGGTTTTCAATGAGTACCATGACAAGTAAACTCAAG 468
|| || | | ||||| ||||||||| || ||| ||| ||||| || ||||||| | |||
Sbjct 426 TGATCAACCA-TCAAGGGTTTCAAAGATTGTCATTGACTACCACGAGAAGTAAAGTTAAG 484
Query 469 TACGGTCTTGTTCCCCTTCTT-AATCATTTTGCT-GAGGAAGGAACAACTCTTGACTTGC 526
|||| |||||||| ||| || |||||| | ||| | |||||| |||||| | || ||||
Sbjct 485 GACGGGCTTGTTCCACTT-TTCAATCATATCGCTCG-GGAAGGCACAACTGTAGATTTGC 542
Query 527 AAAG-CGTCTTCGGGAGGTTCACTTTCGATACAA-TTTTCATCCTTGTAA-CTGGT-T-C 581
||| || ||| |||||||||| |||||||||| | | | | |||| | ||| |
Sbjct 543 -AAGATGTGTTCTGGAGGTTCACGTTCGATACAACTCTAGTTAC-AGTAACCGGGTGTGA 600
Query 582 TGATCCTAGATCTCTCTCCATTGAAATGCCTG-AAGACGAATTTGCTAAAGCTCTCGACG 640
|||||||||||||||||||||||||||||| | || || | ||||||||||| |||
Sbjct 601 TGATCCTAGATCTCTCTCCATTGAAATGCCAGTAATT-GAGTCCGCTAAAGCTCTGGAC- 658
Query 641 A-TGTTGGAGAAGGGATTC-TTTATAGGCATTTTAAACCAAGGTTCTTGTGGAAGCTGCA 698
| | ||| ||||||||| | ||||||||||| ||||||| || |||||||||||||| ||
Sbjct 659 ACTATTGTAGAAGGGAT-CGTTTATAGGCATGTTAAACCTAGATTCTTGTGGAAGCTACA 717
Query 699 AAACTGGATAGGATTCGG-ACAAGAGAAGAAGCTCACT-GAAGCTAATGCAACTTTTGAC 756
|| |||| | ||| |||| | | ||||||||| | | | |||||| ||| | ||||||
Sbjct 718 AAGCTGGGTCGGAGTCGGGATA-GAGAAGAAGATGA-TAGAAGCTGGTGCCATTTTTGAT 775
Query 757 CGCGTGTGTGCCAAATACATATCAGCCAAGAGAGAAGAGATTAAAAGATCACAAGGGACT 816
|| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 776 CGAGTGTGTGCGAAATACATATCAGCCAGGAGAGAAGAGATTAAAAGATCACAAGGGA-T 834
Query 817 TCC-AATGGAGGAAGTCAGGATCTTTTAACTTC-CTTCATAAAGCTAGACACGACCAAGT 874
| ||||||| |||| | ||||||| || || | ||||||||| || || |||||||
Sbjct 835 TAATAATGGAGAAAGTGAACATCTTTTGACATCTCA-CATAAAGCTTGATACAACCAAGT 893
Query 875 ACAAGCTCTTGAATCCGAGTGAC-GATAAGTTCCTTAGAGACAACATCTTAGCTTT-CAT 932
|| ||||| || |||| | | | ||||||||||| ||||||| |||| ||||| | |
Sbjct 894 ACCAGCTCATGGATCCTA-TCAATGATAAGTTCCTCCGAGACAATGTCTTTGCTTTAC-T 951
Query 933 TCTAGC-GGGAAGAGACACAACAGCCACCGCTCTCTCTTGGTTCTTCTGGCTTCTCTCTG 991
|||||| |||| |||| || || ||| | |||||| |||||||||||| | || | || |
Sbjct 952 TCTAGCTGGGA-GAGATACCACTGCCTCTGCTCTCACTTGGTTCTTCTCGTTTTTGTCCG 1010
Query 992 AAAATCCAC-ATGTGGTAGCCAAG-ATTCATCAAGAGATC-A-AC-AT-CAAC-ACTGA- 1043
|||| || | | ||||| | | || |||| |||||||| | || || | || | ||
Sbjct 1011 AAAACCCTCTA-GTGGT-GACTAGGATTCGCCAAGAGATTGACACGATTCTACCAA-GAA 1067
Query 1044 -TC-TA-T--CAA-GA-A--C-AG---GAAATAGCCAA-G-AGAA-TGTAGACAAGTTGG 1087
| || | | | || | | | | || || || | || | | || ||||||| |
Sbjct 1068 GTAGTAGTGGCCACGAGAGGCCATCTTGTGAT-GC-AATGGAGTACT-TAAACAAGTTAG 1124
Query 1088 TGTATTTACATGGT-GCGTTGTGTGAAGCAATGAGACTCTACCCACCAGTTTCCT-TCG- 1144
|||||||||| || || ||||||||| ||||||| || | |||||| ||| ||| |||
Sbjct 1125 TGTATTTACA-GGCCGCATTGTGTGAAACAATGAGGCTTTGCCCACCGGTT-CCTCTCGA 1182
Query 1145 GACGCAAGTCTCCAATCA-AATCAGATGTGCTTCCAAGTGGCCATAAAGTTGATGCAAAC 1203
| || |||||| | | |||||||||||||||||||||| |||||||| || ||||||
Sbjct 1183 G-CGTTTGTCTCCTGT-AGAATCAGATGTGCTTCCAAGTGGACATAAAGTCGAAGCAAAC 1240
Query 1204 TCTAAGATTATTA-TCTGTCTTTATGCATTGGGGAGGATGCGAGCGGTTTGGGGAGAAGA 1262
|| || ||| || ||| | |||||| |||| |||||| |||| || |||||||||||
Sbjct 1241 TCAAATATT-TTGGTCTTTATTTATGGGGTGGGTAGGATGAGAGCTGTATGGGGAGAAGA 1299
Query 1263 TGCATC-GCAGTTCAAGCCAGAGAGATGGATTTCGGAGAATGGAG-GCATAAAACATG-A 1319
|||||| | | ||||||||||||||||||||||| |||| |||| | | | ||||| |
Sbjct 1300 TGCATCAGAA-TTCAAGCCAGAGAGATGGATTTCCGAGACCGGAGAGT-TGAGACATGTA 1357
Query 1320 GCCTTCCTTCAAGTTTTT-GTCGTTTAATGCCGGTCCAAGAACT-TGTCTAGGTAAACAT 1377
||| |||||||||| || | | || |||||||| ||||||| | || || ||||||||
Sbjct 1358 -CCTGCCTTCAAGTTCTTAG-CATTCAATGCCGGCCCAAGAA-TATGCCTCGGTAAACAA 1414
Query 1378 CTAGCTATGACTCAAATGAAGATAGTGGCAGTGGAGATATTACGAAACTACGACATTAAG 1437
||||||||| |||||||||||| ||||| ||||||||||||| |||||| |||||||||
Sbjct 1415 ATAGCTATGATTCAAATGAAGATTGTGGCCGTGGAGATATTACAAAACTATGACATTAAG 1474
Query 1438 GTTCTCCAA-GGACAGAAGATTG 1459
||| |||| || |||||| |||
Sbjct 1475 GTTG-CCAAAGGGCAGAAGTTTG 1496
> Ahg331566 jgi|Araly1|331566|fgenesh1_pm.C_scaffold_8000909
Length=1482
Score = 667 bits (361), Expect = 0.0
Identities = 1028/1336 (77%), Gaps = 101/1336 (8%)
Strand=Plus/Plus
Query 185 TTCTCGAAACCTCTGACTTGACCTTTCCATTCAAAGGACCGCGGTTCACAGGAATGGATA 244
|||| |||| | | || || || ||||||||||| |||||| ||||| | ||||||||||
Sbjct 113 TTCTTGAAAGCACCGAGTTAACATTTCCATTCAAGGGACCGTGGTTCGCTGGAATGGATA 172
Query 245 TGTTGCTCACGGTTGATCCAGCTAACATTCATCATA--TAATGAGCTCAAATTTCTCAAA 302
|| ||||||| | |||||||||||| ||| | | || || | | |||||| ||||| ||
Sbjct 173 TGCTGCTCACAGCTGATCCAGCTAATATTTA-C-TACCTAGTAAACTCAAACTTCTCCAA 230
Query 303 CTACATCAAAGG-ACCGGAGTTCCAAGATG-TTTTTGATGTGTTAGGAGACAG-TTTCA- 358
| | ||||| || | ||| |||| | | ||||||| || | ||| | ||| |
Sbjct 231 TTTTGTTAAAGGTTCC-AACTTCAAAGA-GATCTTTGATGCCTTCGAAGA-TGCTTT-AC 286
Query 359 TCACCACGGACTCG--GAGCTATGGAAGAATATGAGGAAATCTTATCAAGCCATGCTCCA 416
|||| | ||||||| | || |||||||||| || ||||| ||| ||| |||||| || |
Sbjct 287 TCACAAAGGACTCGTTG-GC-ATGGAAGAATCTGCGGAAAGCTTCTCAGGCCATGATCAA 344
Query 417 -TAGTCAAGAGTTTCAAAGGTTTTCAATGAGTACCATGACAAGTAAACTCAAGTACGGTC 475
| ||||| ||||||||| || ||| ||| ||||| || ||||||| | ||| |||| |
Sbjct 345 CCA-TCAAGGGTTTCAAAGATTGTCATTGACTACCACGAGAAGTAAAGTTAAGGACGGGC 403
Query 476 TTGTTCCCCTTCTT-AATCATTTTGCT-GAGGAAGGAACAACTCTTGACTTGCAAAG-CG 532
||||||| ||| || |||||| | ||| | |||||| |||||| | || |||| ||| |
Sbjct 404 TTGTTCCACTT-TTCAATCATATCGCTCG-GGAAGGCACAACTGTAGATTTGC-AAGATG 460
Query 533 TCTTCGGGAGGTTCACTTTCGATACAA-TTTTCATCCTTGTAA-CTGGT-T-CTGATCCT 588
| ||| |||||||||| |||||||||| | | | | |||| | ||| | |||||||
Sbjct 461 TGTTCTGGAGGTTCACGTTCGATACAACTCTAGTTAC-AGTAACCGGGTGTGATGATCCT 519
Query 589 AGATCTCTCTCCATTGAAATGCCTG-AAGACGAATTTGCTAAAGCTCTCGACGA-TGTTG 646
||||||||||||||||||||||| | || || | ||||||||||| ||| | | |||
Sbjct 520 AGATCTCTCTCCATTGAAATGCCAGTAATT-GAGTCCGCTAAAGCTCTGGAC-ACTATTG 577
Query 647 GAGAAGGGATTC-TTTATAGGCATTTTAAACCAAGGTTCTTGTGGAAGCTGCAAAACTGG 705
|||||| || | ||||||||||| ||||||| || |||||||||||||| |||| ||||
Sbjct 578 TAGAAGGAAT-CGTTTATAGGCATGTTAAACCTAGATTCTTGTGGAAGCTACAAAGCTGG 636
Query 706 ATAGGATTCGG-ACAAGAGAAGAAGCTCACT-GAAGCTAATGCAACTTTTGACCGCGTGT 763
| ||| |||| | | ||||||||| | | | |||||| ||| | |||||| || ||||
Sbjct 637 GTCGGAGTCGGGATA-GAGAAGAAGATGA-TAGAAGCTGGTGCCATTTTTGATCGAGTGT 694
Query 764 GTGCCAAATACATATCAGCCAAGAGAGAAGAGATTAAAAGATCACAAGGGACTTCC-AAT 822
|||| |||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 695 GTGCGAAATACATATCAGCCAGGAGAGAAGAGATTAAAAGATCACAAGGGA-TTAATAAT 753
Query 823 GGAGGAAGTCAGGATCTTTTAACTTC-CTTCATAAAGCTAGACACGACCAAGTACAAGCT 881
|||| |||| | ||||||| || || | ||||||||| || || ||||||||| ||||
Sbjct 754 GGAGAAAGTGAACATCTTTTGACATCTCA-CATAAAGCTTGATACAACCAAGTACCAGCT 812
Query 882 CTTGAATCCGAGTGAC-GATAAGTTCCTTAGAGACAACATCTTAGCTTT-CATTCTAGC- 938
| || |||| | | | ||||||||||| ||||||| |||| ||||| | |||||||
Sbjct 813 CATGGATCCTA-TCAATGATAAGTTCCTCCGAGACAATGTCTTTGCTTTAC-TTCTAGCT 870
Query 939 GGGAAGAGACACAACAGCCACCGCTCTCTCTTGGTTCTTCTGGCTTCTCTCTGAAAATCC 998
|||| |||| || || ||| | |||||| |||||||||||| | || | || ||||| ||
Sbjct 871 GGGA-GAGATACCACTGCCTCTGCTCTCACTTGGTTCTTCTCGTTTTTGTCCGAAAACCC 929
Query 999 AC-ATGTGGTAGCCAAG-ATTCATCAAGAGATC-A-AC-AT-CAAC-ACTGA--TC-TA- 1047
| | ||||| | | || |||| |||||||| | || || | || | || | ||
Sbjct 930 TCTA-GTGGT-GACTAGGATTCGCCAAGAGATTGACACGATTCTACCAA-GAAGTAGTAG 986
Query 1048 T--CAA-GA-A--C-AG---GAAATAGCCAA-G-AGAA-TGTAGACAAGTTGGTGTATTT 1094
| | | || | | | | || || || | || | | || ||||||| ||||||||
Sbjct 987 TGGCCACGAGAGGCCATCTTGTGAT-GC-AATGGAGTACT-TAAACAAGTTAGTGTATTT 1043
Query 1095 ACATGGT-GCGTTGTGTGAAGCAATGAGACTCTACCCACCAGTTTCCT-TCG-GACGCAA 1151
||| || || ||||||||| ||||||| || | |||||| ||| ||| ||| | ||
Sbjct 1044 ACA-GGCCGCATTGTGTGAAACAATGAGGCTTTGCCCACCGGTT-CCTCTCGAG-CGTTT 1100
Query 1152 GTCTCCAATCA-AATCAGATGTGCTTCCAAGTGGCCATAAAGTTGATGCAAACTCTAAGA 1210
|||||| | | |||||||||||||||||||||| |||||||| || |||||||| || |
Sbjct 1101 GTCTCCTGT-AGAATCAGATGTGCTTCCAAGTGGACATAAAGTCGAAGCAAACTCAAATA 1159
Query 1211 TTATTA-TCTGTCTTTATGCATTGGGGAGGATGCGAGCGGTTTGGGGAGAAGATGCATC- 1268
|| || ||| | |||||| |||| |||||| |||| || |||||||||||||||||
Sbjct 1160 TT-TTGGTCTTTATTTATGGGGTGGGTAGGATGAGAGCTGTATGGGGAGAAGATGCATCA 1218
Query 1269 GCAGTTCAAGCCAGAGAGATGGATTTCGGAGAATGGAG-GCATAAAACATG-AGCCTTCC 1326
| | ||||||||||||||||||||||| |||| |||| | | | ||||| | ||| ||
Sbjct 1219 GAA-TTCAAGCCAGAGAGATGGATTTCCGAGACCGGAGAGT-TGAGACATGTA-CCTGCC 1275
Query 1327 TTCAAGTTTTT-GTCGTTTAATGCCGGTCCAAGAACT-TGTCTAGGTAAACATCTAGCTA 1384
|||||||| || | | || |||||||| ||||||| | || || |||||||| ||||||
Sbjct 1276 TTCAAGTTCTTAG-CATTCAATGCCGGCCCAAGAA-TATGCCTCGGTAAACAAATAGCTA 1333
Query 1385 TGACTCAAATGAAGATAGTGGCAGTGGAGATATTACGAAACTACGACATTAAGGTTCTCC 1444
||| |||||||||||| ||||| ||||||||||||| |||||| |||||||||||| ||
Sbjct 1334 TGATTCAAATGAAGATTGTGGCCGTGGAGATATTACAAAACTATGACATTAAGGTTG-CC 1392
Query 1445 AA-GGACAGAAGATTG 1459
|| || |||||| |||
Sbjct 1393 AAAGGGCAGAAGTTTG 1408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58963699260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5