BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32175.1
Length=873
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491516 jgi|Araly1|491516|fgenesh2_kg.7__949__AT4G32175.1 1275 0.0
> Ahg491516 jgi|Araly1|491516|fgenesh2_kg.7__949__AT4G32175.1
Length=857
Score = 1275 bits (690), Expect = 0.0
Identities = 804/859 (94%), Gaps = 7/859 (1%)
Strand=Plus/Plus
Query 1 GGGTTCTCATCGTCGTCAAGGAACAAGCTTTAACAGA-GTTTAACATATATTAGGGTTCT 59
||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||
Sbjct 1 GGGTTCTCATCGTCGTCAAGGAACAAGCTTTAACAGAGGTTT-ACATAAATTAGGGTTCT 59
Query 60 TATCTCCAAAACCCACCTCACTCATGGCTGCCAAAGTTTCTGTCTCTCCCACAAGCCTCT 119
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 60 TATCTCCAAAACCCACCTCACTCATGGCTGCTAAAGTTTCTGTCTCTCCCACAAGCCTCA 119
Query 120 TAAATCAGATTGTGGTTCCAGGTGATGTTGTTCTTGATTTGTCAAACATGAATAACCAAA 179
|| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
Sbjct 120 TAGATCAGATTGTGGTTCCAGGTGATGTTGTTCTTGATTTATCAAACATGACTAACCAGA 179
Query 180 CAATCAAGCTCGGAAGTGGCCTTCTTCAGGATAATGATGCTATCTCTGCCATGAGAGCTG 239
||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 180 CAATCAAGCTCGGCAGTGGCCTTCACCAGGATAATGATGCTATCTCCGCCATGAGAGCTG 239
Query 240 GCAAATTAAGTTACTCCAAGCCTAATAAGTATTGGCTCGAAAGTTCTCATAAACGGTATA 299
|||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 240 GCAAATTAAGTTTTTGCAAGCCTAATAAGTATTGGGTCGAAAGTTCTCATAAACGGTACA 299
Query 300 TACCTCGCCCTGATGATCATGTTCTTGGAATCGTGGTCGATTCTAGGGCAGATAATTTTT 359
|||| |||||||| ||||||||||||||||| ||||| ||||||| | |||||||| |||
Sbjct 300 TACCCCGCCCTGAGGATCATGTTCTTGGAATTGTGGTAGATTCTAAGACAGATAATATTT 359
Query 360 GGGTGGACATTAAAGGACCTCAATTAGCACTTTTGCCAGTTCTTGCATTCGAAGGAGGAA 419
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 360 GGGTGGACATAAAAGGACCTCAATTAGGGCTTTTGCCAGTTCTTGCATTCGAAGGAGGAA 419
Query 420 CACGAAGAAATATTCCCAAGTTTGAGGTAGGCACTCTGCTTTATCTCCGGGTTGTCAAGA 479
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 420 CTCGAAGAAATATTCCCAAGTTTGAGGTAGGCACTCTGCTTTATCTTCGGGTTGTCAAGA 479
Query 480 CAAACATAGGAATGAATCCGGAGCTGTCTTGTACCGAGGCTAGTGGGAAAGCTGCATTAT 539
|||||| |||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 480 CAAACACAGGAATGAATCCGGAGCTGTCTTGTATGGACGCAAGTGGGAAAGCTGCATTAT 539
Query 540 TTGGACCCTTGAGAGATGGTTTCATGTTTGAAACTTCAACTGGTCTTTCAAGAATGCTGT 599
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTGGACCCTTAAGAGATGGTTTCATGTTTGAAACTTCAACTGGTCTTTCAAGAATGCTGT 599
Query 600 TGAATTCACCAACGCGCCCGGTCATTGAGGCTCTTGGAAAGAAACTCTCGTTCGAGATAG 659
||| |||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 600 TGAGTTCACCAACGTGCCCGGTCATCGAGGCTCTTGGAAAGAAACTCTCATTCGAGATAG 659
Query 660 CTGTGGGCTTAAATGGCAGAGTTTGGGTAAATGC-GACAGCTCCACGTATAGTCATTATC 718
|||||||||||||||||||||||||||||||| | | | |||||||||| ||||||||||
Sbjct 660 CTGTGGGCTTAAATGGCAGAGTTTGGGTAAATTCTG-CTGCTCCACGTACAGTCATTATC 718
Query 719 GTGGCCAATGCAATAATGAACTCGGAATCTCTAAGTGGGACTCAGCAGAGAATCATGGTT 778
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GTGGCCAATGCTATGATGAACTCGGAATCTCTAAGTGGGACTCAGCAGAGAATCATGGTT 778
Query 779 GAGAAATTGCTCGCGATAATTTCAGACTAA-ACGTTATTGTTC-TTGAAATGTA-ACTGA 835
||||||||||| |||| ||||||||||||| ||||| |||||| |||||||||| | |||
Sbjct 779 GAGAAATTGCTAGCGAAAATTTCAGACTAATACGTTTTTGTTCCTTGAAATGTATAATGA 838
Query 836 ACCCTCATGATGCTCTTTA 854
||||| |||||||||||||
Sbjct 839 ACCCTGATGATGCTCTTTA 857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32328233616
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5