BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32200.1
Length=4332
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925985 jgi|Araly1|925985|scaffold_201546.1 375 1e-102
Ahg353606 jgi|Araly1|353606|fgenesh1_pg.C_scaffold_7000779 363 8e-99
> Ahg925985 jgi|Araly1|925985|scaffold_201546.1
Length=1834
Score = 375 bits (203), Expect = 1e-102
Identities = 333/395 (84%), Gaps = 12/395 (3%)
Strand=Plus/Plus
Query 25 GAGCAGCAATCGC-TCATTTTGACTACGGAA-TTGCTCCGTACTGCCATCTTCAATATCA 82
|||||| | |||| || || |||||| |||| ||||| |||| ||| || ||||| ||||
Sbjct 57 GAGCAGGACTCGCTTC-TTCTGACTA-GGAATTTGCTTCGTATTGCTATATTCAACATCA 114
Query 83 GTTACATCAGAGGCCTCTTTCCCGTGCGGTATTTCAAGGATATGTCGGTTCCTGCTTTAG 142
| || |||||||| |||||||| | | ||||||||| |||| ||||||||||||||||
Sbjct 115 GCTATATCAGAGGACTCTTTCCTGAGAAGTATTTCAACGATAAATCGGTTCCTGCTTTAG 174
Query 143 ATCTGAAGATGAAGAAGCTAATGCCTATGGACGCTGAATCACGCCGATTGATTGGCTGGA 202
|| ||||||| ||||||||||||||||||||||||||||| |||||||| |||| ||||
Sbjct 175 ATATGAAGATTAAGAAGCTAATGCCTATGGACGCTGAATCTCGCCGATTAATTGATTGGA 234
Query 203 TGGAGAAAGGGGTCTACGATGCCCTGCATAAGAAACACCTGAAA-AAGCTGATATTCTAC 261
|||||||||| ||||||||||| || || | |||| | | ||| | ||| || |||| |
Sbjct 235 TGGAGAAAGGAGTCTACGATGCGCTTCAGAGGAAATA-TTTAAAGACGCTCATGTTCTGC 293
Query 262 ATATGTGAAACAGTAGATGGTCCCTTGATTGAGGAATACATATTTTCTTTCAGCTATTCA 321
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 294 ATATGTGAAACAGTAGATGGTCCGATGATTGAGGAATACGCATTTTCTTTCAGCTATTCA 353
Query 322 GATTCTGACAGTCAAGATGTCCGGATGAATATCAATATTACTGGAA-TCAATACCTATGG 380
||||||||||| ||||||||| ||||||||||||| |||||||| | || | ||||
Sbjct 354 GATTCTGACAGCCAAGATGTCATGATGAATATCAATCGTACTGGAAAT-AAGAAAAATGG 412
Query 381 GGGAAC-TCTTAACTCCACTGCTGACA--ACTCCA 412
||||| | |||||||||||||||||| ||||||
Sbjct 413 AGGAACAT-TTAACTCCACTGCTGACATTACTCCA 446
> Ahg353606 jgi|Araly1|353606|fgenesh1_pg.C_scaffold_7000779
Length=381
Score = 363 bits (196), Expect = 8e-99
Identities = 258/287 (90%), Gaps = 7/287 (2%)
Strand=Plus/Plus
Query 20 ACAACGAGCAGCAA---TCGCTCATTTTGACTACGGAATTGCTCCGTACTGCCATCTTCA 76
||| ||||||| || |||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 11 ACACCGAGCAGGAATCTTCGCTCGTTTTGACTAGGGAATTGCTCCGTACTGCCATCTTCA 70
Query 77 ATATCAGTTACATCAGAGGCCTCTTTCCCGTGCGGTATTTCAAG-GATATGTCGGTTCCT 135
| |||||||||||||||||||||||||||||| ||||||| || |||| |||||||||
Sbjct 71 ACATCAGTTACATCAGAGGCCTCTTTCCCGTGAAGTATTTC-AGAAATATATCGGTTCCT 129
Query 136 GCTTTAGATCTGAAGATGAAGAAGCTAATGCCTATGGACGCTGAATCACGCCGATTGATT 195
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 GCTTTAGATATGAAGATGAAGAAGCTAATGCCTATGGACGCTGAATCACGCCGATTGATT 189
Query 196 GGCTGGATGGAGAAAGGGGTCTACGATGCCCTGCATAAGAAACACCTGAAAA-AGCTGAT 254
|||||| |||||||| | ||||||||||||||||| |||||||||||||| | | || ||
Sbjct 190 GGCTGGGTGGAGAAAAGAGTCTACGATGCCCTGCAGAAGAAACACCTGAAGACA-CTTAT 248
Query 255 ATTCTACATATGTGAAACAGTAGATGGTCCCTTGATTGAGGAATACA 301
|||||||| |||||||||||||| ||||| || ||||||||||||
Sbjct 249 GTTCTACATCTGTGAAACAGTAGAGGGTCCGATGGTTGAGGAATACA 295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 163837851765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5