BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32260.1
Length=1034
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491508 jgi|Araly1|491508|fgenesh2_kg.7__941__AT4G32260.1 1417 0.0
> Ahg491508 jgi|Araly1|491508|fgenesh2_kg.7__941__AT4G32260.1
Length=933
Score = 1417 bits (767), Expect = 0.0
Identities = 883/936 (94%), Gaps = 19/936 (2%)
Strand=Plus/Plus
Query 1 AATCTGACGACCACAGCCTTTAGCTTATTTGTGTGGCGAAGAGAAGAGATAACATTCCTA 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATCTCACGACCACAGCCTTTAGCTTATTTGTGTGGCGAAGAGAAGAGATAACATTCCTA 60
Query 61 AGCAAATCTCTTCTCTCTC-C-C-ATTCGTCTCCAAAGAGATT------A-CAG-TTTTG 109
||||||||||||||||||| | | |||||||||||||||||| | ||| |||||
Sbjct 61 AGCAAATCTCTTCTCTCTCTCTCTCTTCGTCTCCAAAGAGATTACAGAGATCAGTTTTTG 120
Query 110 AGCATTTCTCATCTCTCGAAGCTCTTCTCT--GTGTGTGTGGCGATGGCTGCTAATTCGA 167
| |||||||||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 121 AACATTTCTCATCTCTCGAAGCTCTTCTCTCAGTGTGTGTAGCCATGGCTGCTAATTCGA 180
Query 168 TAATGGCTTCCTCCAAACCCCTAATCTCCCTGTCAtccaaccaacaaccaaaccgagtcc 227
| |||||||| |||||||| ||||||||||| || |||||||||||||||| ||||||||
Sbjct 181 TTATGGCTTCTTCCAAACCACTAATCTCCCTCTCCTCCAACCAACAACCAAGCCGAGTCC 240
Query 228 aaattcccaaattcgccaaacttccccaaattcccaaatCCCTCACTTCCTCCACCGATC 287
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 241 AAATTCCCAAATTCGCCAAACTTCCCCAAATTCCCAAATCCATCACTTCCTCCTCCGATC 300
Query 288 TCCGTAGCAAAGCACTATCACTCTCCTCCGCCACCGCCAAATCCTTAGCTTTAATCGCCG 347
||||||||||||| ||||||||||| ||||||||||||||||| |||||| |||||||||
Sbjct 301 TCCGTAGCAAAGCTCTATCACTCTCTTCCGCCACCGCCAAATCTTTAGCTCTAATCGCCG 360
Query 348 CTTTCGCTCCTCCGTCGATGGCGGAGGCGATGGAGAAAGCACAGCTCTTCGATTTCAATC 407
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCTTCGCTCCTCCGTCAATGGCGGAGGCGATGGAGAAAGCACAGCTCTTCGATTTCAATC 420
Query 408 TCACGCTTCCGATCATCGTTGTTGAGTTTCTCTTCTTGATGTTCGCTCTCGACAAGGTCT 467
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 421 TAACGCTTCCGATCATCGTTGTTGAGTTTCTCTTCTTGATGTTCGCGCTCGACAAGGTCT 480
Query 468 ATTACTCTCCGCTTGGTAACTTCATGGATCAAAGAGACGCTTCCATCAAAGAGAAGCTCG 527
|||||||||||||||| || |||||||| || ||||||||||||||||||||||||||||
Sbjct 481 ATTACTCTCCGCTTGGGAATTTCATGGACCAGAGAGACGCTTCCATCAAAGAGAAGCTCG 540
Query 528 CGAGTGTTAAGGACACTTCGACTGAAGTAAAGGAGCTCGATGAGCAAGCCGCCGCCGTGA 587
|||||||||| ||||||||| |||| |||||||||||||||||| |||||||||||||||
Sbjct 541 CGAGTGTTAAAGACACTTCGGCTGAGGTAAAGGAGCTCGATGAGAAAGCCGCCGCCGTGA 600
Query 588 TGAGAGCAGCTAGGGCTGAGATCGCCGCCGCGCTTAACAAGATGAAGAAGGAGACTCAGG 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGAGAGCAGCTAGGGCTGAGATCGCCGCCGCGCTTAACAAGATGAAGAAGGAGACTCAGG 660
Query 648 TTGAAGTCGAGGAGAAGCTAGCGGAGGGAAGGAAGAAGGTGGAGGAAGAGCTAAAAGAAG 707
|||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 661 TTGAGGTTGAGGAGAAGCTAGCGGAGGGAAGGAAGAAGGTGGAGGAGGAGCTAAAAGAAG 720
Query 708 CTTTGGCGAGCTTGGAG-AGTCAGAAAGAAGAAACCATTAAAGCTTTGGATTCTCAGATT 766
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTTTGGCGAGCTTGGAGAAG-CAGAAAGAAGAAACCATTAAAGCTTTGGATTCTCAGATT 779
Query 767 GCTGCTCTTAGTGAAGACATTGTCAAGAAGGTTCTTCCTTCTTAAATTATATTTTTGTTA 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GCTGCTCTTAGTGAAGACATTGTCAAGAAGGTTCTTCCTTCTTAAATTATATTTTTGTTA 839
Query 827 ACTGTGTAATTCTCTGTCTCTCTATCT--CAAAACTTATTTACAAGAAATTACTGTAAAt 884
||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 840 ACTTTGTAATTCTCTGTCTCTCTCTCTGTCAAAACTTATTTACAAGAAATTACTGTAAAT 899
Query 885 ctcttcttcttcttcttctctgtttcttGGATTGTT 920
|||||||| | |||||||||||||||||||||||||
Sbjct 900 CTCTTCTT-T-CTTCTTCTCTGTTTCTTGGATTGTT 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38466023253
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5