BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32270.1
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491506 jgi|Araly1|491506|fgenesh2_kg.7__939__AT4G32270.1 1397 0.0
> Ahg491506 jgi|Araly1|491506|fgenesh2_kg.7__939__AT4G32270.1
Length=901
Score = 1397 bits (756), Expect = 0.0
Identities = 866/915 (95%), Gaps = 23/915 (3%)
Strand=Plus/Plus
Query 1 AGAGATCCCTTAACCATGATTTCCTTCAAAGTAT-ATTCCCCTTCCTCATCCTCTTCCCA 59
||||||||||||||||||||| |||||||||||| ||| |||||||||||||||| |
Sbjct 1 AGAGATCCCTTAACCATGATTCCCTTCAAAGTATCTTTCACCTTCCTCATCCTCTT--C- 57
Query 60 TGCTCATGGTATCAATCTTCCACTCTGACCCAACTCAAGCTCTGATTTCTCCTACTCCGT 119
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 --C-CATGGTATCAATTTTCCACTCTGACCCAACTCAAGCTCTGATTTCTCCTACTCCGT 114
Query 120 CGCCAAAAATCTTGGAAGTAGATGTCTTAGCCCGGGAAAATCAAATTTTCTCAATAATCA 179
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 115 CGCCAAAAA-CTTGGAAGTAGATGTCTTAGCCCGGGAAAATCAAAATTTCTCAATAATCA 173
Query 180 ATCTATGGACGTTCCACCACGCCGCTCTTTGGCTGCGTCTCTCTCGCCTCTCCGGCTAAT 239
||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 174 ATCTATGGACGTT---CCACGCCGCTCTTTTGCAGCGTCTCTCTCGCCTCTCCGGCTAAT 230
Query 240 CGATGGACTCCCTCGTCGGAGGAGTTTCAATTATAATCAGATGCCTGAAGAGCCCATCAA 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 CGATGGACTCCCGCGTCGGAGGAGTTTCAATTATAATCAGATGCCTGAAGAGCCCATCAA 290
Query 300 ACTCACTGTTCTCAAGCTTGATGGATCTTCCTTTGGTATTCAAGTGTTGAAGACAGCGAC 359
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 ACTCACTGTTCTTAAGCTTGATGGATCTTCCTTTGGTATTCAAGTGTTGAAGACAGCGAC 350
Query 360 AGTAGGGGAGCTCAAGATGGCAGTAGAAGCTGCGTTTTCTCACTTGCCCATCTCAGGCCC 419
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 AGTAGGGGAGCTCAAGACGGCAGTAGAAGCTGCGTTTTCTCACTTGCCCATCTCAGGCCC 410
Query 420 TGGCAAGATCTCATGGCCGCATGTTTGGGGACAATTCTGCTTATCTTATGAAGATAAAAG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TGGCAAGATCTCATGGCCGCATGTTTGGGGACAATTCTGCTTATCTTATGAAGATAAAAG 470
Query 480 ATTGATTAATGAGTCTGAGTACCTCACT-GAATTTGGCATTAAAGACGGCGATCAGCTTC 538
||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 471 ATTGATTAACGAGTCTGAGTACCTC-CTTGAATTTGGCATTAAAGACGGCGATCAGCTTC 529
Query 539 GGTTCATCCGCCATATCTCAAACTACTGCATGTTAATGGTGAAGCATAAGAGCAAGACAC 598
| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 530 GATTCATCCGCCATATCTCAAACTACTGCATGTTGATGGTGAAGCATAAGAGCAAAACAC 589
Query 599 CCCGTGTTTCTTCTTTCAAACAACTCAAACTGTTCTCAACCACACCGGAAACCCGGAAAA 658
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 590 CCCGTGTTTCTTCTTTCAAACAACTCAAACTGTTCTCAACCACACCCGAAACCCGGAAAA 649
Query 659 AGAACGTAATAAGGGAAGTTGAAGAAGACGGTGTTGTTGACTCCATCCCTCGGAGCCAAC 718
|||| || || |||||||| ||||||| ||||||| ||||||||||||||| |||||
Sbjct 650 AGAAGGT--TA-GGGAAGTTCAAGAAGATGGTGTTG---ACTCCATCCCTCGGATCCAAC 703
Query 719 CAAGCTTTCTAGCAACTGTATTGGGAGGTTTGCTCTCTTACAAGTCGACG-C-C-AAGTC 775
||||||||||||| |||||||||||||||| ||||||||||||||||||| | | |||||
Sbjct 704 CAAGCTTTCTAGCGACTGTATTGGGAGGTTGGCTCTCTTACAAGTCGACGACGCCAAGTC 763
Query 776 AACGAGGTACTAAATACAGAAACGTGACTGCAAGTAGAGTTTTTAACAAACTCATTGCAA 835
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 AACGAGGTACTAAACACAGAAACGTGACTGCAAGTAGAGTTTTTAACAAACTCATTGCAA 823
Query 836 GGTTTCGTTTCAAGTGTAATTCCGAGAAGGATGTGTGGAACAGaaaaaaaCTCATATCCG 895
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 824 GGTTTCGTTTCAAGTGTTTTTCCGAGAAGGATGTGTGGAACAGAAAAAAACTCATCTCCG 883
Query 896 AAACCTa-aaaaaaa 909
|||| || |||||||
Sbjct 884 AAACATAGAAAAAAA 898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39075989925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5