BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32272.2
Length=1619
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491505 jgi|Araly1|491505|fgenesh2_kg.7__938__AT4G32272.1 1786 0.0
> Ahg491505 jgi|Araly1|491505|fgenesh2_kg.7__938__AT4G32272.1
Length=1404
Score = 1786 bits (967), Expect = 0.0
Identities = 1060/1105 (96%), Gaps = 6/1105 (1%)
Strand=Plus/Plus
Query 388 TTATGCTTGTGCTGTTCAATAAAGCAGCTCTGTCTTCCTATGATTTTCCGTGTGTGAACG 447
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 298 TTATGCTTGTGCTGTTCAATAAAGCAGCTCTATCTTCCTATGATTTCCCGTGTGTGAACG 357
Query 448 TTATCACGCTATTCCAGATGGTTTCCTCTAGCTTATTTCTATATGCTTTGAGGCGCAGGA 507
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 358 TTATCACGCTATTCCAGATGGTTTCCTCTAGCTTGTTTCTATATGCCTTGAGGCGCAGGA 417
Query 508 AGATCATCTCTTTCACAGCTGCTGATTCTTTTTCTATTGATAGTGCCTCAACCTTTGTGC 567
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 418 AGATCATCTCTTTCACAGCTGCTGATTCTTTTTCTATTGATAATGCCTCAAATTTTGTGC 477
Query 568 CAGTGAAGACATTGTTTCACACCCTTCCTCTAGCAATAGCATATCTTTTGTACATGCTAG 627
|||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||
Sbjct 478 CAGTGAAGACATTGTTTCACACCCTTCCTCTATCAATAGCCTATCTTATGTACATGCTAG 537
Query 628 CCTCTATGGCATCTGTTAGAGGGGTAAATGTTCCCATGTATACCACGCTTAGGCGTACTA 687
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 538 CCTCTATGGCATCTGTCAGAGGGGTAAATGTTCCCATGTATACCACACTTAGGCGTACTA 597
Query 688 CTGTGGCATTTACTATGGTGATTGAGTACATGCTCACAGGTCAGAGATATACACGGTCTA 747
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CGGTGGCATTTACTATGGTGATTGAGTACATGCTCACAGGTCAGAGATATACACGGTCTA 657
Query 748 TCATTGGAAGTGTTGGTATTATCTTGCTTGGCGCATTTTTTGCTGGAGCTAGGGACTTGT 807
|||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 658 TCATTGGAAGTGTTGGCGTTATCCTGCTTGGAGCATTTTTTGCTGGAGCTAGGGACTTGT 717
Query 808 CATTTGACTTTTATGGATATGGTGTTGTTTTCTTAGCCAACATATCAACAGCAGTATATC 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CATTTGACTTTTATGGATATGGTGTTGTTTTCTTAGCCAACATATCAACAGCAGTATATC 777
Query 868 TAGCAACCATTGCCCGTACTGGTAAATCAAGTGGCTTGAATAGCTTTGGCCTTATGTGGT 927
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 778 TAGCAACCATTGCCCGTACTGGGAAATCAAGTGGCTTGAATAGCTTTGGCCTTATGTGGT 837
Query 928 CCAATGGAATTATATGCGGACCTATATTGATGATTTGGACATTTATTTGCGGTGACTTGG 987
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 838 CCAATGGAATTATATGCGGACCTATATTGATGATTTGGACATTTATTTGCGGCGACTTGG 897
Query 988 AGAAGACAATTAACTTTCCTCACCTCTTAACTCCTGGTTTCATGGTTGTATTACTCTGCT 1047
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 898 AGAAGACAATTAACTTTCCTCACCTCTTATCTCCTGGTTTCATGGTTGTATTACTCTGCT 957
Query 1048 CGTGCGTGCTGGCTTTCGTCTTAAACTACTGCATTTTCCTTAACACCACTCTCAATTCAG 1107
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 958 CGTGCGTGCTGGCTTTCTTCTTAAACTACTGCATTTTCCTTAACACCACTCTCAACTCAG 1017
Query 1108 CTTTGACGCAGACAATTTGTGGCAATATGAAGGATCTATTCACGGTTGGACTAGGCTGGA 1167
|| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1018 CTCTGACGCAAACAATTTGTGGCAATATGAAGGATCTATTCACGGTTGGACTTGGCTGGA 1077
Query 1168 TGCTCTTTGGAGGACTCCCATTCGACCTGATGAATGTGATTGGACAGCTTTTTGGTTTCT 1227
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1078 TGCTCTTTGGAGGACTCCCATTCGACCTGATGAATGTGATTGGACAGCTTCTTGGTTTCT 1137
Query 1228 TCGGGTCAGGTTTATATGCATATTATAAGATCATCGGGAGGTAACAAGTCCAAAACAAAG 1287
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1138 TCGGGTCAGGTTTATATGCATATTATAAGATCATCGGGAGGTAACAACTCCAAAACAAAG 1197
Query 1288 AAAAGCCAA-AGAAAACATGAGT----GGCCTAGTGATGATAAAGGCTCATTAGTTTAAG 1342
|| |||||| | ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1198 AAGAGCCAACA-AAAACATGAGTTTAAGGACTAGTGATGATAAAGGCTCATTAGTTTAAG 1256
Query 1343 GAAAAGTTGTTGACTAGTAGTGTTCAAGTGGAGATAGAGTGTTGAGCTTTTGGTTTTGGA 1402
|||||||||| ||| |||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 1257 GAAAAGTTGTAGACCAGTAATGTTCAAGTGGAGATAGAGTGTTCAGCTTTTGGTTTTGCA 1316
Query 1403 GGTGACTTTAGAGTAGTATTAATAATGAAAGGCCTAATTTTTTGAACTTGCGTCTTGTTC 1462
|| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1317 AGTAACTTTAGAGTAGTATTAATAATGCGAGGCCTAATTTTTTGAACTTGTGTCTTGTTC 1376
Query 1463 TTCTTCAGTTTTCAACAAGGCGAAA 1487
|||||||||||||||||||||||||
Sbjct 1377 TTCTTCAGTTTTCAACAAGGCGAAA 1401
Score = 206 bits (111), Expect = 6e-52
Identities = 190/223 (85%), Gaps = 25/223 (11%)
Strand=Plus/Plus
Query 131 agagtagacggcgaacgaagacgaagacgaggagCGTGGAGAGAGTCTACCTCTCTCGAC 190
|||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 93 AGAG-AGACGGCGAACGAAGAAGAAGACGAAGAGCGTGGAGAGAGTCTACCTCTCTCGAC 151
Query 191 GATGAG------GA--A-TAATCCTGTCCTTCCGGTTTCCGATCCTCCCCTCGCCGGTGA 241
||||| || | ||| |||||||||||||||||||||||||| |||||||||||
Sbjct 152 GATGAATTCCATGAGGACTAACCCTGTCCTTCCGGTTTCCGATCCTCCTCTCGCCGGTGA 211
Query 242 GAATGATAGCGATGGTAAAGGTGTCGATGATCGGCTTTTCAAAGGATCTGCCATGACCAA 301
|| || | ||| | || |||||||||||||||||||||| |||||||||||
Sbjct 212 -AA--AT-G--ATG-T-----TG---ATGATCGGCTTTTCAAAGGATCCGCCATGACCAA 256
Query 302 ACGTGGAGCTTATGCTGCTCTTTCTTACATGGCTTGTGCTGTT 344
|||||||||||| |||||||||||||||||||| |||||||||
Sbjct 257 ACGTGGAGCTTACGCTGCTCTTTCTTACATGGCCTGTGCTGTT 299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60677760285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5