BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32285.1
Length=2289
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328503 jgi|Araly1|328503|fgenesh1_pm.C_scaffold_7000730 3070 0.0
Ahg481396 jgi|Araly1|481396|fgenesh2_kg.4__456__AT2G25430.1 1110 0.0
> Ahg328503 jgi|Araly1|328503|fgenesh1_pm.C_scaffold_7000730
Length=2538
Score = 3070 bits (1662), Expect = 0.0
Identities = 1838/1924 (96%), Gaps = 8/1924 (0%)
Strand=Plus/Plus
Query 213 AGTGGAATCATGGCGCTAAGCATGCGAAAAGCGATCGGAGTTGTTAAGGATCAGACTAGT 272
||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||
Sbjct 616 AGTGGAATCATGGCGCTAAACATGCGGAAAGCGATCGGAGTTGTTAAGGACCAGACTAGT 675
Query 273 ATCGGCATAGCGAAGGTAGCTAGCAACATGGCTCCAGATCTGGAAGTTGCGATCGTGAAA 332
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 ATCGGCATAGCCAAGGTAGCTAGCAACATGGCTCCAGATCTGGAAGTTGCGATCGTGAAA 735
Query 333 GCTACAAGCCACGACGATGATCAATCTAGTGACAAGTATATCCGCGAGATCCTTAGCTTA 392
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 736 GCTACGAGCCACGACGACGATCAATCTAGTGACAAGTATATCCGCGAGATCCTTAGCCTA 795
Query 393 ACTTCACTCTCCCGTGGCTACGTTCACGCCTGTGTCACCTCTGTTTCACGCCGTCTTAAG 452
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 796 ACTTCACTCTCCCGTGGCTACGTTCACGCCTGTGTCACCTCTGTCTCACGCCGTCTTAAG 855
Query 453 AAGACGCGTGACTGGATCGTTGCTCTCAAGGCTCTTATGCTTGTCCATCGTCTTCTTAAC 512
|||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||
Sbjct 856 AAGACGCGTGACTGGATCGTCGCTCTCAAGGCTCTTATGCTCGTCCACCGTCTTCTGAAC 915
Query 513 GAAGGAGATCCACTGTTTCAGGAAGAGATCCTCTACGCTACACGACGAGGTACGAGGATT 572
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 916 GAAGGCGATCCACTGTTTCAGGAAGAGATCCTTTACGCTACACGACGAGGTACGAGGATT 975
Query 573 CTTAATATGTCTGATTTTCGTGATGAGGCTCATTCTAGCTCTTGGGATCACTCTGCTTTC 632
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 CTTAACATGTCTGATTTTCGTGATGAGGCTCATTCTAGCTCTTGGGATCACTCTGCTTTC 1035
Query 633 GTTAGGACATATGCTAGTTACTTGGATCAGAGGCTTGAATTGGCTCTTTTTGAGA-GAAG 691
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1036 GTTAGGACATATGCTAGTTACTTGGATCAGAGGCTTGAACTGGCTCTTTTTGAGAGGAA- 1094
Query 692 AGGGAGAAA---TGGTGGT-G--GTAGTAGTAGTAGTCACCAAAGTAATGGTGATGATGG 745
||||||||| ||||||| | |||||||||||||||| ||||||||||| ||||||||
Sbjct 1095 AGGGAGAAATGGTGGTGGTGGTAGTAGTAGTAGTAGTCATCAAAGTAATGGGGATGATGG 1154
Query 746 ATATAATCGATCTAGGGATGATTTTAGGTCTCCTCCTCCAAGAACTTATGATTATGAGAC 805
||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1155 ATATAGTCGGTCTAGGGATGATTTTAGGTCTCCCCCTCCAAGAACTTATGATTATGAGAC 1214
Query 806 TGGTAATGGTTTTGGTATGCCTAAGAGGTCGAGGTCTTTTGGAGATGTGAATGAGATTGG 865
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1215 TGGTAATGGTTTTGGTATGCCTAAGAGGTCTCGGTCCTTTGGAGATGTGAATGAGATTGG 1274
Query 866 AGCAAGAGAGGAGAAGAAATCTGTTACTCCTTTAAGAGAGATGACACCTGAGAGGATTTT 925
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 AGGAAGAGAGGAGAAGAAATCTGTTACTCCTTTAAGAGAGATGACACCTGAGAGGATTTT 1334
Query 926 TGGAAAGATGGGTCATTTGCAGAGGCTGCTTGATCGGTTTTTATCTTGTCGACCCACTGG 985
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1335 TGGAAAGATGGGTCATTTGCAGAGGCTGCTTGATCGGTTTTTATCTTGTCGACCTACCGG 1394
Query 986 TTTAGCCAAAAACAGTCGGATGATCTTGATTGCCATGTACCCGGTTGTGAAAGAGAGTTT 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 TTTAGCCAAAAACAGTCGGATGATCTTGATTGCCATGTACCCGGTTGTGAAAGAGAGTTT 1454
Query 1046 TAGGCTTTACGCTGACATCTGTGAGGTCTTGGCTGTTCTGCTTGACAAGTTTTTTGATAT 1105
|||||||||||| ||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 1455 TAGGCTTTACGCCGACATATGCGAGGTCTTGGCTGTTCTGCTTGACAAGTTTTTCGATAT 1514
Query 1106 GGAGTATACTGATTGTGTTAAGGCCTTTGATGCTTATGCTAGTGCGGCTAAACAGATTGA 1165
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1515 GGAGTATACTGATTGTGTCAAGGCCTTTGATGCTTATGCTAGTGCGGCTAAACAGATCGA 1574
Query 1166 TGAGCTCATTGCGTTTTACCATTGGTGTAAGGATACTGGAGTGGCGAGATCTTCTGAGTA 1225
||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 1575 TGAGCTCATTGCGTTTTACCATTGGTGTAAGGACACGGGCGTGGCGAGATCTTCTGAGTA 1634
Query 1226 CCCTGAGGTTCAGAGGATTACGAGCAAGCTGTTGGAGACACTAGAAGAGTTTGTGAGAGA 1285
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1635 CCCTGAGGTTCAGAGGATTACGAGCAAGCTGTTGGAGACGCTAGAAGAGTTTGTGAGAGA 1694
Query 1286 CAGAGCCAAGAGGGCCAAAAGTCCTGAGAGGAAAGAGATTGAAGCTCCTCCTGCTCCTGC 1345
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1695 CAGAGCCAAGAGGGCCAAAAGTCCCGAGAGGAAAGAGATTGAAGCTCCTCCTGCTCCTGC 1754
Query 1346 TCCTCCTGTGGAAGAGCCAGTGGATATGAATGAGATCAAAGCGCTTCCTCCTCCTGAGAA 1405
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1755 CCCTCCAGTGGAAGAGCCAGTGGATATGAATGAGATCAAAGCGCTTCCTCCTCCAGAGAA 1814
Query 1406 TCACACTCCTCCACCTCCACCTGCACCAGAGCCTAAACCGCAGCAACCACAAGTAACAGA 1465
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1815 TCACACTCCTCCACCCCCACCTGCACCAGAGCCTAAACTGCAGCAACCACAAGTAACAGA 1874
Query 1466 TGATCTAGTTAACTTGAGAGAAGATGATGTCTCTGGCGATGACCAAGGAAACAAGTTTGC 1525
||||||||||||| ||||||||||| ||||| |||| ||||||||||| |||||||||||
Sbjct 1875 TGATCTAGTTAACCTGAGAGAAGATAATGTCACTGGTGATGACCAAGGGAACAAGTTTGC 1934
Query 1526 TCTTGCGCTTTTTGCTGGCCCTCCCGCTAATAACGGAAAATGGGAAGCTTTCTCTTCTGA 1585
||||| || ||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1935 GCTTGCACTCTTTGCGGGTCCTCCCGCTAATAACGGAAAATGGGAAGCTTTTTCTTCTGA 1994
Query 1586 TAACAACGTGACATCGGCTTGGCAGAATCCAGCAGCAGAGCTTGGGAAGGCGGATTGGGA 1645
||| ||||||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1995 TAATGGCGTGACATCAGCTTGGCAGAATCCAGCAGCAGAGCTCGGGAAAGCGGATTGGGA 2054
Query 1646 ACTAGCATTGGTCGAGACAGCTAGTAATCTAGAACATCAGAAAGCCGCAATGGGTGGTGG 1705
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2055 ACTGGCATTGGTTGAGACAGCTAGTAATCTAGAACATCAGAAAGCCGCAATGGGTGGTGG 2114
Query 1706 TTTAGACCCATTGTTACTCAACGGAATGTACGATCAAGGAGCAGTTAGACAACACGTGAG 1765
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2115 TTTAGATCCGTTGTTACTCAACGGAATGTACGATCAAGGAGCAGTTAGACAACACGTGAG 2174
Query 1766 CACCTCAGAGTTAACTGGTGGAAGTTCAAGCAGCGTTGCACTCCCTTTACCGGGTAAAGT 1825
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 2175 CACCTCAGAGTTAACTGGTGGAAGTTCAAGCAGCGTAGCGCTCCCTTTACCGGGTAAAGT 2234
Query 1826 CAACAGCCATATACTAGCACTCCCTGCACCAGATGGAACCGTTCAGAAAGTGAACCAAGA 1885
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 2235 CAACAGCCATATACTAGCACTCCCTGCGCCCGATGGAACCGTTCAGAAAGTGAACCAAGA 2294
Query 1886 CCCGTTCGCTGCTTCCCTGACCATTCCGCCTCCTTCCTATGTGCAAATGGCTGAGATGGA 1945
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2295 CCCGTTTGCTGCTTCCCTGACCATTCCGCCTCCTTCATATGTGCAAATGGCTGAGATGGA 2354
Query 1946 CAAAAAGCAATATCTATTGACTCAAGAGCAGCAATTATGGCAGCAATATCAGCAAGAAGG 2005
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2355 CAAAAAGCAATATTTATTGACTCAGGAGCAGCAATTATGGCAGCAATATCAGCAAGAAGG 2414
Query 2006 AATGAGAGGTCAAGCTAGTTTGGCTAAGATGAATACAGCCCAAACCGCAATGCCTTATGG 2065
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2415 AATGAGAGGTCAAGCTAGTTTGGCTAAGATGAATACAGCCCAAACCGCAATGCCGTATGG 2474
Query 2066 TATGCCGCCGGTTAACGGGATGGGACCGTCGCCGATGGGTTATTACTACAACAACCCTTA 2125
||||| ||||||||||||||||||||| | |||||||| ||||||||||||||||||||
Sbjct 2475 GATGCCACCGGTTAACGGGATGGGACCGCCACCGATGGGGTATTACTACAACAACCCTTA 2534
Query 2126 CTGA 2129
||||
Sbjct 2535 CTGA 2538
> Ahg481396 jgi|Araly1|481396|fgenesh2_kg.4__456__AT2G25430.1
Length=2349
Score = 1110 bits (601), Expect = 0.0
Identities = 1129/1378 (82%), Gaps = 59/1378 (4%)
Strand=Plus/Plus
Query 801 GAGACTGGTAATGGTT-T--TGGTATGCCTAAGAGGTCGAGGTCTTTTGGAGATGTGAAT 857
|||| | ||||||||| | |||| |||| ||||| || |||||| |||||| ||| |
Sbjct 796 GAGA-TAGTAATGGTTATGGTGGTGTGCCGAAGAGATCTCGGTCTTACGGAGATATGACT 854
Query 858 GAGATTGGAGCA--A-----GAGAG--GAGAAGAAA-TCTGTTACTCCTTTAAGAGAGAT 907
||||| |||| | | ||||| ||||||||| | |||||| |||||||| || ||
Sbjct 855 GAGATGGGAGGAGGAGGGGGGAGAGATGAGAAGAAAGT-TGTTACGCCTTTAAGGGAAAT 913
Query 908 GACACCTGAGAGGATTTTTGGAAAGATGGGTCATTTGCAGAGGCTGCTTGATCGGTTTTT 967
||| || ||||||||||| |||||||||||||||||||| ||| ||||||||||||||||
Sbjct 914 GACGCCGGAGAGGATTTTCGGAAAGATGGGTCATTTGCAAAGGTTGCTTGATCGGTTTTT 973
Query 968 ATC-TTGTCGACCCACTGGTTTAGCCAAAAACAGTCGGATGATCTTGATTGCCATGTA-C 1025
|| ||| |||| ||||||||||| || ||| || ||||||| ||||| || |||| |
Sbjct 974 GTCTTTG-AGACCTACTGGTTTAGCTAAGAACTGTAGGATGATATTGATCGCGTTGTATC 1032
Query 1026 CCGGTTGTGAAAGAGAGTTTTAGGCTTTACGCTGACATCTGTGAGGTCTTGGCTGTTCTG 1085
|| ||||||| |||||||||| ||| || ||||| ||||||||||| ||||||||| ||
Sbjct 1033 CC-GTTGTGAGGGAGAGTTTTAAGCTGTATGCTGATATCTGTGAGGTTTTGGCTGTTTTG 1091
Query 1086 CTT-GACAAGTTTTTTGATATGGAGTATACTGATTGTGTTAAGGCCTTTGATGCTTATGC 1144
|| || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1092 -TTGGATAAGTTTTTTGATATGGAGTATACGGATTGCGTTAAGGCCTTTGATGCTTATGC 1150
Query 1145 TAGTGCGGCTAAACAGATTGATGAGCTCATTGCGTTTTACCATTGGTGTAAGGATACTGG 1204
||||||||||||||||||||||||||| |||||| |||| ||||||||||||| || ||
Sbjct 1151 TAGTGCGGCTAAACAGATTGATGAGCTTATTGCGCTTTATAATTGGTGTAAGGAAACGGG 1210
Query 1205 AGTGGCGAGATCTTCTGAGTACCCTGAGGTTCAGAGGATTACGAGCAAGCTGTTGGAGAC 1264
|||||||| || |||||||| || || |||||||||||||| |||||| ||||||||||
Sbjct 1211 TGTGGCGAGGTCGTCTGAGTATCCGGAAGTTCAGAGGATTACAAGCAAGTTGTTGGAGAC 1270
Query 1265 ACTAGAAGAGTTTGTGAGAGACAGAGCCAAGAG-GGCCAAAAGTCCTGAGAGGAAAGAGA 1323
| |||||||||||||||||||| || ||||| || || ||||| |||||||||||||
Sbjct 1271 GTTGGAAGAGTTTGTGAGAGACAGGGCAAAGAGAGG-GAAGAGTCCCGAGAGGAAAGAGA 1329
Query 1324 TTGAAGCTCCTCCTGCTCCTGCTCCTCCTGTGGAAGAGCC---A-GTGGATATGAATGAG 1379
| |||||||||||| | || | | || | || ||||| | | |||||||| ||
Sbjct 1330 TCGAAGCTCCTCCTCCGCCAG-T--TCAAGAAGACGAGCCTGAACCT-GATATGAACGAA 1385
Query 1380 ATCAAAGCGCTTCCTCCTCCTGAGAATCACACTCCTCCACCTCCACCTGCACCAGAGCCT 1439
|||||||||||||||||||| |||||| |||||||||||||||| |||| |||||| |||
Sbjct 1386 ATCAAAGCGCTTCCTCCTCCAGAGAATTACACTCCTCCACCTCCGCCTGAACCAGAACCT 1445
Query 1440 AAACCGCAGCAACCACAAGTAACAGATGATCTAGTTAACTTGAGAGAAGATG-ATGTCTC 1498
| || || |||| ||| | || || ||| ||||||||||||| || |||| | ||| |
Sbjct 1446 CAGCCTCAAAAACCGCAATTTACCGAGGATTTAGTTAACTTGAGGGAGGATGCA-GTCAC 1504
Query 1499 TGGC-GATGACCAAGGAAACAAGTTTGCTCTTGCGCTTTTTGCTGGCCCTCCC-GCTAAT 1556
|| ||||||||||| || |||||||| |||||||| |||||||| || ||| | ||||
Sbjct 1505 -AGCTGATGACCAAGGGAATAAGTTTGCGCTTGCGCTCTTTGCTGGTCCACCCAG-TAAT 1562
Query 1557 AACGGAAAATGGGAAGCTTTCTCTTCTGATAACAACGTGACATCGGCTTGGCAGAATCCA 1616
|||||||||||||||||||||||||| ||| | ||||| || ||||||||||||||
Sbjct 1563 AACGGAAAATGGGAAGCTTTCTCTTCGGATGG-A--GTGACCTCTGCTTGGCAGAATCCT 1619
Query 1617 GCAGCAGAGCTTGGGAAGGCGGATTGGGAACTAGCATTGGTCGAGACAGCTAGTAATCTA 1676
|| ||||||| ||||| |||||||||||| | |||||||| || |||||||| ||| ||
Sbjct 1620 GCTGCAGAGCCCGGGAAAGCGGATTGGGAATTGGCATTGGTTGAAACAGCTAGCAATTTA 1679
Query 1677 GAACATCAGAAAGCCGCAATGGGTGGTGGTTTAGACC-CATTGTTACTCAACGGAATGTA 1735
||| | |||| |||||| |||| ||||| || || | ||||| |||||||| |||||
Sbjct 1680 GAAAAACAGACAGCCGCTTTGGGCGGTGGATTCGATAAC-TTGTTGCTCAACGGGATGTA 1738
Query 1736 CGATCAAGGAGCAGTTAGACAACACGTGAGCACCTCAG-AGTTAACTGGTGGAAGTTCAA 1794
||||||||| || |||||||||||||||||||| | | || |||||||| || | |
Sbjct 1739 TGATCAAGGAATGGTCAGACAACACGTGAGCACCTC-GCAATTGACTGGTGGTAGCGCGA 1797
Query 1795 GCAGCGTTGCACT-CCCTTTACCGGGTAAAGTCAACAGCCATA-TACTAGCACTC-CCTG 1851
||||||| || | ||||| ||| |||||| ||||| || | || | || || ||||
Sbjct 1798 GCAGCGTAGCTTTACCCTT-ACCAGGTAAAACCAACAATCA-AGTATTGGC-CTTACCTG 1854
Query 1852 CACCAGATGGAACCGTTC-AGAAAGTGAACCAAGACCCGTTCGCTGCTTCCCTGACCATT 1910
|||||||||||||||| | ||||||||||||||||||| ||||| ||||| || ||||||
Sbjct 1855 CACCAGATGGAACCGT-CGAGAAAGTGAACCAAGACCCATTCGCAGCTTCACTAACCATT 1913
Query 1911 CCGCCTCCTTCCTATGTGCAAATGGCTGAGATGGACAAAAAGCAATATCTATTGACTCAA 1970
|| || ||||| |||||||||||||| |||||||| || ||||| |||||| ||| ||||
Sbjct 1914 CCACCACCTTCATATGTGCAAATGGCCGAGATGGAGAAGAAGCAGTATCTACTGAGTCAA 1973
Query 1971 GAGCAGCAATTATGGCAGCAATATCAGCAAGAAGGAATGAGAGGTCAAGCTAGTTTGGCT 2030
||||| || ||||||||||||| |||| |||||||||||||||||||| |||||||||
Sbjct 1974 GAGCAACAGCTATGGCAGCAATACCAGCGTGAAGGAATGAGAGGTCAAGCCAGTTTGGCT 2033
Query 2031 AAGATGAATACAGC-CCAAACCGCAATGCCTTATGGTATGCCGCCGGTTAACGGGATGGG 2089
|||||||| || | ||| | || || ||| || ||||| || || |||||||||||
Sbjct 2034 AAGATGAACACCGGTCCAGTTC-CA--GC-TTACGGAATGCCACCTGTCAACGGGATGGG 2089
Query 2090 ACCGTCGCCGATGGGTTATTACTACAACAACCCTTACTGATTTTATTCATTTT-GTTT 2146
|||| | |||| ||| |||||||||||||| ||||||||||| |||| |||| ||||
Sbjct 2090 ACCGCCACCGACGGGGTATTACTACAACAATCCTTACTGATTC-ATTCTTTTTTGTTT 2146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86198224435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5