BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32290.1
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491501 jgi|Araly1|491501|fgenesh2_kg.7__934__AT4G32290.1 1995 0.0
> Ahg491501 jgi|Araly1|491501|fgenesh2_kg.7__934__AT4G32290.1
Length=1333
Score = 1995 bits (1080), Expect = 0.0
Identities = 1265/1351 (94%), Gaps = 26/1351 (2%)
Strand=Plus/Plus
Query 36 ACAAGTTGCACCAAATCCCACTCTCTCACTCTAGAAACCAAATGTCGTTGATAATAATAG 95
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ACAAGTTGCACCAAATCCCACTCTCTCACTCTAGAAACCAAATGTCGTTG---ATAAT-- 55
Query 96 AACACTTTCTTTCTCTCTCTAAAAAGCAAAAGTAGTCTAGTCACTGA-TTTCTTCTAATC 154
||||| |||||||||||||||||| ||| || |||||||||| ||||||||||||
Sbjct 56 ---ACTTTGTTTCTCTCTCTAAAAAGC-AAA--AG--TAGTCACTGATTTTCTTCTAATC 107
Query 155 CTCCGGTGGAGTGAGAGATGATATCTCCGACGTTGTTTCCTCTCCTCTGCGCTTTATTTC 214
|||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 108 CTCCGG-CGAGTGAGAGATGCTATCTCCGACGTTGTTTCCTCTCTTCTGCGCTTTATTTC 166
Query 215 TATGTCTTCCAGTGGCTGTTATCTTCACAGTCCAGCGAGAACTCACCTGCGTTATCT--- 271
| |||||||| ||||| || ||||||||||||||||||||||||||| |||||||||
Sbjct 167 TCTGTCTTCCGGTGGCCGTAATCTTCACAGTCCAGCGAGAACTCACCGGCGTTATCTCGC 226
Query 272 CGCCGGAGTTTGGTTTCCGctctctttccgtcttctctctttactctcgaaatgtccccg 331
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 227 CGCCGGAGTTTGGTTTCCGCTCTCTTTCCGTCTTCTCTCTCTACTCTCGAAATGTTCCCG 286
Query 332 actcttcttcttcttctcCGGCGGTTCGGATTCGACAGCCGATTCCCAAAGAAGACGACC 391
| | |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 287 A--C-GCTTCTTCTTCTCCGGCGGTTCGGATTCGACAGCCGATTCCTAAAGAAGACGAGC 343
Query 392 CTCTTCTTCGACTATCTTCTCGGGTTAACCCGAATCTACCTCCCGGTTCGACCCGGAAAA 451
| ||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 344 CGCTTCTCCGACTAGCTTCTCGGGTCAACCCGAATCTACCTCCCGGTTCGACCCGGAAAT 403
Query 452 TAGCTTTTATGTACTTAACGACGTCGCCTCTTCCGTTCGCGCCTCTTTGGGAGATGTTCT 511
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 TGGCTTTTATGTACTTAACGACGTCGCCTCTTCCGTTCGCGCCTCTTTGGGAGATGTTCT 463
Query 512 TCGACGGAATCTCCAAGAATCTTTACAATGTCTACGTTCACGCGGATCCGACCCGAGAAT 571
|| | |||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 464 TCAATGGAAGCTCCAAGAATCTCTACAATGTCTACGTTCACGCGGATCCGACCCGAGAAT 523
Query 572 ACGACCCGCCGTTCTCCGGCGTGTTCTTGAACCGGGTCATTCA--C-TCTAAACCCTCGC 628
||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 524 ACGACCCACCGTTCTCCGGCGTGTTCTTGAACCGGGTCATTCACTCTTCTAAACCCTCGA 583
Query 629 TGAGACACACTCCCACTCTAACTGCGGCGGCGCGTAGACTACTAGCACACGCGCTTCTCG 688
|||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||
Sbjct 584 TGAGACACACTCCCACTCTAACCGCGGCGGCGCGTCGACTAATAGCACACGCGCTTCTCG 643
Query 689 ACGATCCATTGAATTACATGTTTGCGGTTATATCACCTTCATGCGTACCAATTCGCTCCT 748
|||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 644 ACGATCCATTAAATTACATGTTCGCCGTTATATCACCTTCATGCGTACCAATTCGCTCCT 703
Query 749 TTGACTTCACTTACAAGACATTAGTCTCGTCGCGCAAGAGCTTCATCGAGATACTTAAAG 808
|||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||
Sbjct 704 TTGACTTCACTTACAAGACACTGGTCTCGTCTCGCAAGAGCTTCATCGAGATACTTAAAG 763
Query 809 ACGAGCCGTGGCAGTTCGATAGGTGGACGGCGATTGGGAGACACGCGATGCTTCCGGAGG 868
|||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| |
Sbjct 764 ACGAGCCGTGGCAGTTCGATAGATGGACGGCGACTGGGAGTCACGCGATGCTTCCGGAAG 823
Query 869 TGAAGCTCGAGGAGTTTCGGATCGGGTCTCAGTTTTGGGTTTTGAAACGGAGACACGCGC 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 TGAAGCTCGAGGAGTTTCGGATCGGGTCTCAGTTTTGGGTTTTGAAACGGAGACACGCGC 883
Query 929 GTGTGGTGGCGCGTGATCGGCGTATATGGGTGAAGTTTAACCAGACGTGCGTGCGGGAAG 988
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 884 GTGTGGTGGCGCGTGATCGGCGTATATGGGTGAAGTTTAACAAGACGTGCGTGCGGGAAG 943
Query 989 ACTCGTGTTATCCTGAAGAAAGTTACTTTCCTACCCTTCTTAATATGCGGGATCCACGTG 1048
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 944 ACTCGTGTTATCCTGAAGAAAGTTACTTTTCTACCCTTCTTAATATGCGGGATCCACGTG 1003
Query 1049 GATGTGTCCCCGCCACGCTTACTCACGTGGACTGGACTGTTAACGACGGTGGTCACCCGA 1108
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1004 GATGTGTCCCCGCCACGCTTACTCACGTGGACTGGACCGTCAACGACGGTGGTCACCCGC 1063
Query 1109 GGATGTACGAGCCGGAGGAAGTCGTGCCTGAGCTGGTCTTGCGGCTTAGAAAGACTAGAC 1168
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1064 GGATGTACGAGCCGGAGGAAGTCGTGCCTGAGCTGATCTTGCGGCTTAGAAAGACTAGGC 1123
Query 1169 CAAGATATGGTGAGGATGGAATCAACGGTTCGGAGTGGTCTAAGGTTGAGCGGATGGATC 1228
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1124 CAAGATACGGTGAGGATGGAATCAACGGTTCGGAGTGGTCTGCGGTTGAGCGGATGGATC 1183
Query 1229 CGTTTCTGTTTGCTAGGAAGTTTTCACCGCAGGCTCTTGAGCCGTTGCTGGGTATGGCTC 1288
|||||||||| |||||||||||||||||| ||||||||||||| ||| ||||||||||||
Sbjct 1184 CGTTTCTGTTCGCTAGGAAGTTTTCACCGGAGGCTCTTGAGCCATTGTTGGGTATGGCTC 1243
Query 1289 GAACCGTCTTGTTCAATGACTCAGCCGGTGGTGTGTGAATGGTTTCTCTAATGGTATTGT 1348
|||||||||||||||||||||| |||| ||||||||||||| |||||||||||| |||||
Sbjct 1244 GAACCGTCTTGTTCAATGACTCGGCCGATGGTGTGTGAATGTTTTCTCTAATGGCATTGT 1303
Query 1349 TGTAAATTCAGttttagttt-tagttttttt 1378
||||||||| || |||||| | ||||||||
Sbjct 1304 TGTAAATTCTCTTGTAGTTTCT-GTTTTTTT 1333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55802208925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5