BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32295.1
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491499 jgi|Araly1|491499|fgenesh2_kg.7__932__AT4G32295.1 1399 0.0
> Ahg491499 jgi|Araly1|491499|fgenesh2_kg.7__932__AT4G32295.1
Length=958
Score = 1399 bits (757), Expect = 0.0
Identities = 897/961 (93%), Gaps = 24/961 (2%)
Strand=Plus/Plus
Query 25 tctctctctcATAGAAAAGGAAGTGGTGGAAG--ATGCCGAGGCCAGGGCCAAGACCGTA 82
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 TCTCTCTCTGATAGAAAAGGAAGTGGTGGAAGATATGCCGAGGCCAGGGCCAAGACCGTA 60
Query 83 CGACTGTATCAGAAGAGCTTGGCATAGTGACAGACACCAACCCATGAGGGGTTTGCTCAT 142
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 CGACTGTATCAGAAGAGCTTGGCATAGTGACATACACCAACCCATGAGGGGTTTGCTCAT 120
Query 143 CCAAGAGATTTTCAGGATTGTTTGTGAGATTCACAGCCAATCCACCAGGAAAAACACAGA 202
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 121 CCAAGAGATTTTCAGGATTGTTTGTGAGATTCACAGCCAATCCACCAAGAAGAACACAGA 180
Query 203 ATGGCAAGAGAAGCTCCCTGTTGTTGTCTTGAGAGCTGAAGAAATCATGTATTCCAAAGC 262
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 ATGGCAAGAGAAGCTCCCTGTTGTTGTTTTGAGAGCTGAAGAAATCATGTATTCCAAAGC 240
Query 263 CAATTCTGAGGCTGAGTATATGGACATGAAGACCCTTTTAGACCGTACAAACGACGCCAT 322
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TAATTCTGAGGCTGAGTATATGGACATGAAGACCCTTTTAGACCGTACAAACGACGCCAT 300
Query 323 CAACACAATCATACGACTTGATGAGACCACCGAAACAGGGGAATTTCTTCAGCCTTGTAT 382
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAACACCATCATTCGACTTGATGAGACCACCGAAACAGGGGAATTTCTTCAGCCTTGTAT 360
Query 383 TGAAGCTGCATTGCATTTGGGGTGCACACCAAGGAGAGCTTCAAGGAGCCAACGGAACAT 442
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGAAGCTGCTTTGCATTTGGGGTGCACACCAAGGAGAGCTTCAAGGAGCCAACGGAACAT 420
Query 443 TAACCCGAGATGTTATCTTAGCCAAGACTCAACTAACTTGGACAACATGTTGTCCCAAGT 502
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 AAACCCGAGATGTTATCTTAGCCAAGACTCAACTAACTTGGACAACATTTTGTCCCAAGT 480
Query 503 ATTCATGAAACC-AA-A-CAACTTTGCTCCAAAGAATCTTGCAGTAGCACAAGAGAATTG 559
|||||||||||| || | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 ATTCATGAAACCTAACAACAACTTTGCTCCAAAGAATCTTGCAGTAGCACAAGAGAAGTG 540
Query 560 CCCTGTCTCCAAGTACTCTGCCTACCCTTTATGCTATTCATTCCGGCCAATCAGTGACTC 619
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 CCCTGTCTCCAAGTACTCGGCCTACCCTTTATGCTATTCATTCCGGCCAATCTCTGACTC 600
Query 620 GTGTAAGTCCAAGAACAGTAGACCGGCGAGTCTCATTGACGCAACAAATGGCATTACCTT 679
||| |||||||| ||||||||||| || |||||| |||| || || ||||||||||||||
Sbjct 601 GTGCAAGTCCAAAAACAGTAGACCTGCAAGTCTCTTTGATGCTACGAATGGCATTACCTT 660
Query 680 TGGTGG-GTGTGAATGTGATCTATCTCTGCGCTTAGGTCCTCTTGGA-C-C----TCCTA 732
|| ||| | |||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 661 TGATGGAG-GTGAATGTGATCTATCTCTGCGCTTAGGTCCTCTTGGATCTCCACCTCCTA 719
Query 733 CTCAAAAACGAAGTAAGATAAGCAGCAACAATAACAAC---TGAAAAGGAG-AGCAAGAT 788
|||| |||||||||||||| |||| |||||| |||||| |||||| ||| | ||||||
Sbjct 720 CTCATAAACGAAGTAAGATGAGCAACAACAACAACAACAGCTGAAAAAGAGGA-CAAGAT 778
Query 789 TGGGTTTTGATTAGCAAGTCTTGTGTTAGAAGAATGTGTGCTT-AGTTAGGCCTTTTAGT 847
|| ||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 779 TGAGTTTTGATTAGTGAGTCTTGTGTTAGAAGAATGTGTGCTTCAGTTAGGTCTTTTAGT 838
Query 848 CTCCTCTCTAGACC-CTAGG-TTTAGGT-TT-GTGAACATGTAAATAGAGAGACGAAGTA 903
|||||||||| || ||||| ||||||| || ||||||||||||||||| ||||||||||
Sbjct 839 ATCCTCTCTAG-CCTCTAGGGTTTAGGTGTTTGTGAACATGTAAATAGATAGACGAAGTA 897
Query 904 ACAAAACAGGAGATGAAGTCGTTTTCTTCTACCTGCATCAATCTCGAATCATCAGACTTC 963
||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||
Sbjct 898 GCAAAACAGGAGATGAAGTCGTTTTCTTCTTCCTGCATCAGTCTCGAATCATCGGACTTC 957
Query 964 A 964
|
Sbjct 958 A 958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35873664897
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5