BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32300.1
Length=3121
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491498 jgi|Araly1|491498|fgenesh2_kg.7__931__AT4G32300.1 4087 0.0
> Ahg491498 jgi|Araly1|491498|fgenesh2_kg.7__931__AT4G32300.1
Length=3061
Score = 4087 bits (2213), Expect = 0.0
Identities = 2505/2643 (95%), Gaps = 31/2643 (1%)
Strand=Plus/Plus
Query 496 ATGAGAGGCGTCTTCATCGTCATCGTAACGTGTCTGGTTTTCTTACCGGATCCTCTACGT 555
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 427 ATGAGAGGCGTCTTCATCGTCTTCGTAACGTGTCTGGTTTTCTTACCGGATCCTCTACTT 486
Query 556 GCCGGTGTAGCGTCCATCGGGAGCATCACTCCAGGTTTTGGAGGATCTCAGATGAATTAC 615
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 487 GCCGGTGTAGCGTCCATCGGGAAAATCATTCCAGGTTTTGGAGGATCTCAGATGAATTAC 546
Query 616 ATCAACAACGATGGTATCTTCCTCGAATCCAACAACTCAGCCTTCGGTTTCGGTTTCGTA 675
||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 547 ATCAACAACGACGGTATCTTCCTCGAATCCAACAACTCAGACTTCGGCTTCGGTTTCGTA 606
Query 676 ACTACACAAGATTCCGTTACTCTGTTCACACTCAGTATCATCCACAAGAGCAGCACGAAA 735
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 607 ACTACACAAGATTCCGTTACTCTGTTCACACTCAGCATCATTCACAAGAGCAGCACGAAA 666
Query 736 CTGATCTGGTCCGCGAACAGAGCTTCCCCTGTTTCCAATTCCGACAAGTTTGTGTTCGAT 795
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 667 CTGATCTGGTCGGCGAACAGAGCTTCCCCTGTTTCCAATTCCGACAAGCTTGTGTTCGAA 726
Query 796 GACAACGGAAATGT-G-G-T--G-A-TG--GA---AGGAACTGAGGTTTGGAGATTGGAT 843
|||||||||||||| | | | | | | || |||||||||||||||||||||||||
Sbjct 727 GACAACGGAAATGTGGTGTTGCGTAGAGAAGACGGAGGAACTGAGGTTTGGAGATTGGAT 786
Query 844 AATTCAGGCAAAAACGCTTCAAGAATCGAGCTGCGTGACTCCGGGAATCTCGTTGTTGTT 903
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 787 AATTCAGGCAAAAATGCTTCAAGAATGGAGCTGCGTGACTCTGGGAATCTCGTTGTTGTT 846
Query 904 TCCGTTGACGGAACTTCGATCTGGGAGAGTTTTGATCATCCGACAGATACTCTGATCACG 963
|| ||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 847 TCTGTTGATGGAACTTCGATCTGGGAGAGTTTTGATCATCCGACAGATACTTTGATTACA 906
Query 964 AATCAAGCTTTCAAAGAAGGCATGAAGCTCACTAGCAGTCCTTCTTCGAGCAACATGACT 1023
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 AATCAAGCTTTTAAAGAAGGCATGAAGCTCACTAGCAGTCCTTCTTCGAGCAACATGACT 966
Query 1024 TATGCCCTTGAGATCAAATCAGGAGATATGGTTTTATCTGTTAACAGCTTAACCCCTCAA 1083
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 967 TATGCTCTTGAGATCAAATCAGGAGATATGGTTTTATCTGTTAACAGCTTGACCCCTCAA 1026
Query 1084 GTGTATTGGTCAATGGCAAATGCCAGAGAGAGGATCATCAACAAAGATGGCGGCGTAGTG 1143
|||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1027 GTGTATTGGTCAATGGGAAATTCCAGAGAAAGGATCATCAACAAAGATGGCGGCGTAGTG 1086
Query 1144 ACTTCATCGTCTCTCCTTGGGAATTCATGGCGGTTCTTTGATCAGAAACAGGTTTTGTTG 1203
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 ACTTCATCGTCTCTCCTTGGGAATTCATGGCGGTTCTTTGATCAGAAACAGGTTTTGTTA 1146
Query 1204 TGGCAGTTTGTATTCTCAGACAATAAAGATGATAACACAACTTGGATCGCTGTTTTGGGA 1263
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 TGGCAGTTTGTATTTTCAGACAATAAAGATGATAACACAACTTGGATCGCTGTTTTGGGA 1206
Query 1264 AACAACGGTGTGATCTCTTTTTCTAATCTTGGAAGCGGAGCATCTGCTGCCGATTCTTCG 1323
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1207 AACAACGGTGTGATCTCTTTTTCTAATCTTGGAAGCGGAACATCTGCTGCTGATTCTTCG 1266
Query 1324 ACTAAAATACCTAGCGATCTGTGCGGAACACCTGAGCCTTGCGGGCCTTACTATGTCTGC 1383
|||||||| || |||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1267 ACTAAAATCCCGAGCGATCTCTGCGCAACACCTGAGCCTTGCGGGCCTTACTATGTCTGC 1326
Query 1384 TCGGGTTCTAAAGTGTGTGGATGTGTGTCCGGGTTGTCTCGGGCTCGGTCTGATTGCAAA 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 TCGGGTTCTAAAGTGTGTGGATGTGTGTCCGGGTTGTCTCGGGCTCGGTCTGATTGCAAA 1386
Query 1444 ACCGGGATTACTTCTCCCTGTAAGAAAACCAAGGATAATGCAACATTGCCTTTGCAGCTA 1503
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 ACCGGTATCACTTCTCCCTGTAAGAAAACCAAGGATAATGCAACATTGCCTTTGCAGCTC 1446
Query 1504 GTAAGTGCTGGAGACGGTGTAGACTATTTCGCTCTTGGGTATGCTCCTCCGTTCTCCAAG 1563
|||| |||||||||| ||||||| |||||||||||||||| |||||| ||||||||||||
Sbjct 1447 GTAAATGCTGGAGACAGTGTAGATTATTTCGCTCTTGGGTTTGCTCCGCCGTTCTCCAAG 1506
Query 1564 AAAACTGATCTTGATAGCTGTAAAGAGTTCTGCCACAACAATTGCTCGTGCCTTGGTCTT 1623
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1507 AAAACCGATCTTGATAGCTGTAAAGAGTTCTGCAACAACAATTGCTCGTGCCTTGGTCTT 1566
Query 1624 TTCTTCCAGAACAGTTCTGGTAATTGCTTCTTGTTTGATTATATTGGAAGCTTTAAAACC 1683
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1567 TTCTTCCAGAACAGTTCTGGTAATTGCTTCTTGTTTGATTGGGTTGGAAGCTTTAAAACC 1626
Query 1684 TCTGGCAATGGAGGCTCTGGGTTTGTGTCTTACATCAAGATCGCAAGTACTGGTTCTGGA 1743
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1627 TCTGGCAATGGAGGCTCTGGGTTTGTGTCTTACATCAAGATCGCAAGTACTAGTTCTGGA 1686
Query 1744 GGTGGAGATAACGGAGAAGATGATGGGAAACATTTTCCTTATGTAGTGATTATTGTCGTG 1803
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 1687 GGTGGAGATAACGGACAAGATGATGGGAAACATTTTCCTTATATAGTGATTATTATTGTG 1746
Query 1804 GTAACAGTTTTTATCATCGCTGTTTTGATCTTTGTGGCCTTCCGGATTCATAAGAGAAAG 1863
|| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1747 GTGACAATTTTCATCATCGCTGTTTTGATCTTTGTGGCCTTCCGGATTCATAAGAGAAAG 1806
Query 1864 AAAATGATTTTGGAGGCTCCTCAAGAGAGTTCAGAAGAAGATAACTTCTTGGAGAACTTA 1923
|||||||| |||||||||||||||||||||||||| || ||||| ||||||||||| |||
Sbjct 1807 AAAATGATCTTGGAGGCTCCTCAAGAGAGTTCAGAGGAGGATAATTTCTTGGAGAATTTA 1866
Query 1924 TCCGGGATGCCTATTCGGTTCGCTTACAAAGATCTTCAGTCAGCGACGAATAACTTCTCG 1983
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1867 TCCGGGATGCCTATCCGGTTCGCTTACAAAGATCTTCAGTCAGCGACGAATAACTTCTCG 1926
Query 1984 GTGAAGTTAGGTCAAGGAGGGTTTGGATCGGTCTATGAAGGTACTTTACCAGATGGTTCT 2043
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1927 GTGAAGTTAGGTCAAGGAGGGTTTGGATCGGTCTATGAAGGTTCTCTACCAGATGGTTCT 1986
Query 2044 CGTCTAGCTGTGAAGAAACTTGAAGGAATCGGTCAAGGGAAGAAAGAATTCAGAGCCGAG 2103
||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1987 CGTTTGGCTGTGAAGAAACTTGAAGGAATCGGTCAAGGCAAGAAAGAATTCAGAGCCGAG 2046
Query 2104 GTTAGTATAATCGGAAGTATTCATCATCTGCACTTGGTGCGGCTAAGAGGATTCTGCGCA 2163
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 2047 GTTAGTATAATCGGAAGCATTCATCATCTGCATTTGGTGCGGCTCAGAGGATTCTGCGCA 2106
Query 2164 GAAGGGGCTCATAGGCTGCTCGCATACGAGTTCTTATCCAAAGGTTCGTTGGAGAGATGG 2223
|||||||||||| |||||||||| |||||||||||||| ||||||||| |||||||||||
Sbjct 2107 GAAGGGGCTCATCGGCTGCTCGCGTACGAGTTCTTATCGAAAGGTTCGCTGGAGAGATGG 2166
Query 2224 ATATTTAGGAAAAAGGATGGCGATGTTCTTCTAGATTGGGACACAAGATTTAACATAGCA 2283
|||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |||
Sbjct 2167 ATATTTAGGAAAAAGGATGGTGATGTTCTGCTGGATTGGGACACAAGATTTAACATCGCA 2226
Query 2284 CTCGGAACAGCCAAAGGTTTAGCGTATCTACATGAAGATTGTGATGCAAGGATTGTTCAC 2343
|||||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||
Sbjct 2227 CTCGGAACAGCCAAAGGTTTAGCGTACCTACACGAAGACTGCGATGCAAGGATTGTTCAC 2286
Query 2344 TGCGATATAAAACCCGAGAACATCCTATTAGACGATAACTTCAATGCCAAGGTATCCGAT 2403
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2287 TGCGATATAAAACCGGAGAACATCCTATTAGACGATAACTTCAACGCCAAGGTATCCGAT 2346
Query 2404 TTCGGACTGGCGAAGCTCATGACCCGCGAACAAAGCCATGTCTTCACAACAATGCGCGGG 2463
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2347 TTCGGACTCGCGAAGCTCATGACCCGCGAACAAAGCCATGTCTTCACAACAATGCGCGGG 2406
Query 2464 ACAAGAGGCTACTTGGCTCCAGAATGGATCACAAACTATGCGATATCAGAGAAGAGTGAT 2523
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 2407 ACAAGAGGCTACTTGGCTCCCGAATGGATCACAAACTATGCGATCTCAGAGAAGAGCGAT 2466
Query 2524 GTTTACAGCTACGGAATGGTGTTGCTAGAGTTAATAGGAGGAAGAAAGAACTATGATCCA 2583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2467 GTTTACAGCTACGGAATGGTGTTGCTAGAGTTAATAGGAGGAAGAAAGAACTATGATCCA 2526
Query 2584 TCAGAAACTTCGGAGAAATGCCATTTTCCTTCTTTTGCTTTCAAGAAGATGGAAGAAGGG 2643
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 2527 TCAGAAACTTCGGAGAAATGCCATTTTCCTTCCTTTGCTTTCAAGAAGATGGAAGAGGGG 2586
Query 2644 AAGCTTATGGATATTGTCGATGGGAAGATGAAGAATGTTGATGTGACTGACGAAAGGGTT 2703
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2587 AAGCTTATGGATATTGTCGATGGGAAGATGAAGAATGTTGATGTGAATGACGAAAGGGTT 2646
Query 2704 CAAAGGGCTATGAAAACCGCACTTTGGTGTATACAAGAAGATATGCAAACGAGACCCTCG 2763
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 2647 CAAAGGGCGATGAAAACTGCGCTTTGGTGTATACAAGAAGATATGCAAACGAGACCCTCG 2706
Query 2764 ATGAGCAAAGTTGTTCAAATGCTTGAAGGTGTTTTTCCGGTGGTCCAGCCACCTAGTTCT 2823
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 2707 ATGAGCAAAGTTGTTCAAATGCTTGAAGGTGTTTTTCCAGTGGTTCAGCCACCAAGTTCT 2766
Query 2824 TCCACTATGGGATCGAGACTTTACTCAAGCTTCTTTAAGTCCATCAGCGAGGACGGCGGT 2883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2767 TCCACTATGGGATCGAGACTTTACTCAAGCTTCTTTAAGTCCATCAGCGAGGACGGCGGT 2826
Query 2884 GCTACTACGTCATCTGGACCGTCCGATTGTAACAGTGAGAATTATCTCTCCGCCGTGAGA 2943
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 2827 GCTACTACGTCATCTGGACCATCAGATTGTAACAGTGAGAATTATCTCTCGGCCGTGAGA 2886
Query 2944 CTCTCCGGTCCGAGATAGCAAT-CTTTTTAGCCAATTTTTAGTATCTTATATAATAGGTT 3002
|||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 2887 CTCTCCGGTCCGAGATAGCAATACTTTT-AGCCAATTTTTAGTATCTTATAG--TAGGTT 2943
Query 3003 TTTGGCTCACCATGTTTTGTTGTATATTGTTTTTGTGTT-ACATCTTAAAA-GAATAG-C 3059
|||||||||||||||||||||||||||| || ||||||| | ||||||||| |||||| |
Sbjct 2944 TTTGGCTCACCATGTTTTGTTGTATATTCTTCTTGTGTTTA-ATCTTAAAAAGAATAGTC 3002
Query 3060 --CATC-A-CTC--AGTTTTGTAACGT-TCCGAGATCAATTATTTCATAGATTACCCGTC 3112
|||| | ||| |||||||||| || || ||||| ||||| |||||| ||||||||
Sbjct 3003 ATCATCCATCTCTCAGTTTTGTAATGTATC-GAGAT---TTATTACATAGAATACCCGTC 3058
Query 3113 GTT 3115
|||
Sbjct 3059 GTT 3061
Score = 438 bits (237), Expect = 1e-121
Identities = 391/456 (86%), Gaps = 47/456 (10%)
Strand=Plus/Plus
Query 13 GCAtctctctact-tctctctctctctGTTTCAACCCCTCTTGTCGTCTATCTCCATCAA 71
|||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 GCATCTCTCT-CTCTCTCTCTCTCTCTGTTTCAACCCCTCTTGTCGTCTTTCTCCATCAA 59
Query 72 AA-AGACCAAAATCAAACATCATTGAATG-T------TAGACAGAGAGGCAAAAACTAAT 123
|| |||||||||||||||||||||||||| | || |||||||||| ||||| |||
Sbjct 60 AATAGACCAAAATCAAACATCATTGAATGTTAAACAATAAACAGAGAGGC-AAAACAAAT 118
Query 124 CAAAGTGTTTCTAATCCCTGAAAATAAGCCCACTTCTTCTATTTTCCTCATTTCAGTTTC 183
|||||||||||||||||||| |||||| |||| ||||||||||||||||||| |||||
Sbjct 119 CAAAGTGTTTCTAATCCCTG-AAATAATCCCA---CTTCTATTTTCCTCATTTCTGTTTC 174
Query 184 TGGGTTTTAATCGATCTC-CCCCTTTCTCACCCTTCCGTCTGAATTCCGGTCTGCAATCG 242
|||||||||||||||||| | ||||||| || | | | |||| ||||| |||||
Sbjct 175 TGGGTTTTAATCGATCTCGCTCCTTTCT---CC-T-C--C----TTCC-GTCTGAAATCG 222
Query 243 TC-GGAAAGTTTTGGA-CTTTACACCAACGCCAAA-GCGAGTTCTTGTTTCTCTGTTTGC 299
| ||| |||||| || ||| || ||||| |||| |||||||||| |||||||||||||
Sbjct 223 -CTGGACAGTTTT-GAGCTTCGCAACAACG-CAAAGGCGAGTTCTTATTTCTCTGTTTGC 279
Query 300 TTCTCTAGGACCAATCAGTTTCCATTTACAGATGCGTACTATTCACCTGTCAGAG-CTCT 358
|||||||||| |||||||||||||||||| | | ||||||||||||| | ||||
Sbjct 280 TTCTCTAGGAACAATCAGTTTCCATTTAC--A---G----ATTCACCTGTCAG-GTCTCT 329
Query 359 GAGATTTGTCTTTTTGCATCTCTCTGA-ATATTTCTCTTTTCTCAGATCCATTGACCTCA 417
||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct 330 GAGATTTGTCTTTTTGCATCTTTCTGGCA-ATTTCTCTTTTCTCAGATCCATTGACCTCA 388
Query 418 TCCACATACATAAAGTTTAGGTATTTTTAAAAGGGT 453
||||||||||||||||||||| |||| ||||||||
Sbjct 389 GCCACATACATAAAGTTTAGGTCTTTTCAAAAGGGT 424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117889308275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5