BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32320.1
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944731 jgi|Araly1|944731|scaffold_700960.1 1611 0.0
> Ahg944731 jgi|Araly1|944731|scaffold_700960.1
Length=1030
Score = 1611 bits (872), Expect = 0.0
Identities = 971/1019 (95%), Gaps = 6/1019 (1%)
Strand=Plus/Plus
Query 37 CTCTCGTCCCACCGTTAAAGATGACGACGACGACTGCTTCTCTGGTT-AAGACTTTTCTG 95
||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||
Sbjct 1 CTCTCGTCCCACCGTTAAAGATGACGACGACGACTGCTTCTCT-TTTGAAGACTTGTCTT 59
Query 96 TTTCGGTGCGACTCGTTTTCATCTTTCAAATTCAAATGCAAATTCGAATCTCCCGCGAAA 155
||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTTGGGTGCGACTCGTCTTCTTCTTTCAAATTCAAATGCAAATTCGAATCTCCCGCGAAA 119
Query 156 ACGCGATTGCTCTCTCCGGCGACCGAGAAACATGTTGTCAGATCGTCAAGAGCCTGGCGT 215
|||||| ||||||||||| |||||| |||||||||||||||||||| |||||||||||||
Sbjct 120 ACGCGAGTGCTCTCTCCGACGACCGGGAAACATGTTGTCAGATCGTTAAGAGCCTGGCGT 179
Query 216 ATTCGTTGCT-TATCCGATGATCCTGGTTCGAGTCATGTTTTCGTTGCAAGTAGAAGGAA 274
|||||||| | | ||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 180 ATTCGTTG-TATCTCCGATGATCCTGGTTCGAGTCATGTTTTCGTTTCCAGTAGAAGAAA 238
Query 275 AATGGTAGTCTTGTTGTCGACGGTGCAGCTTCTGTCTCATATGCTTCCGCAAAACGGGAA 334
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 239 AATGGTAGTCTTGTTGTCGACGGTGCAGCTTCTGTCTCATTTGCTTCCGCAAAACGGGAA 298
Query 335 CGCAGCTGAGATTTATCCGGTGATGCAAAACGAAATAAGGAAAGTGGTGACAAAGGGCAA 394
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 299 CGCAGCTGAGATTTATCTGGTGATGCAAAACGAAATAAGGAAAGTGGTGACAAAGGGTAA 358
Query 395 GGCTGCTGGTGTGCTTCGTTTAGTGTTTCATGATGCTGGAACCTTTGAACTGGACGATCA 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GGCTGCTGGTGTGCTTCGTTTAGTGTTTCATGATGCTGGAACCTTTGAACTGGACGATCA 418
Query 455 TTCTGGTGGCATCAACGGATCTATTGCTTATGAACTTGAGAGACCTGAGAACATAGGTTT 514
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||
Sbjct 419 TTCTGGTGGCATCAACGGGTCTATTGCTTATGAACTCGAGAGACCTGAAAACACAGGTTT 478
Query 515 GAAGAAATCCTTAAAGGTTCTAGCGAAAGCAAAGGTTAAGGTTGACGAGATACAACCAGT 574
|||||||||||||||||||||||| ||||||||| |||||||||| |||||||| |||||
Sbjct 479 GAAGAAATCCTTAAAGGTTCTAGCAAAAGCAAAGATTAAGGTTGATGAGATACATCCAGT 538
Query 575 GTCTTGGGCGGATATGATCTCTGTCGCTGGGTCTGAAGCAGTTTCAATATGTGGCGGCCC 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTCTTGGGCGGATATGATCTCTGTCGCTGGGTCTGAAGCAGTTTCAATATGTGGCGGCCC 598
Query 635 AACAATTCCAGTAGTTTTGGGAAGACTTGATTCAGCGCAACCTGATCCAGAAGGCAAGCT 694
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AACAATTCCAGTAGCTTTGGGAAGACTTGATTCAGCGCAACCTGATCCAGAAGGCAAGCT 658
Query 695 ACCTCCAGAAACCCTGAGTGCCTCGGGATTGAAAGAATGCTTCAAAAGAAAAGGATTTTC 754
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 659 ACCTCCAGAAACCCTGAGTGCCTCGGGTTTGAAAGAATGCTTCAAAAGAAAAGGATTTTC 718
Query 755 GACCCAGGAGCTTGTTGCCTTATCTGGGGCACATACGATTGGGAGTAAAGGCTTTGGAGA 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GACCCAGGAGCTTGTTGCCTTATCTGGGGCACATACGATTGGGAGTAAAGGCTTTGGAGA 778
Query 815 TCCGACAGTTTTTGACAATGCATACTACAAAATCCTTCTTGAAAAACCATGGACGTCAAC 874
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 779 TCCGACAGTTTTTGACAATGCATACTACAAAATCCTTCTTGAAAAACCATGGGCATCAAC 838
Query 875 TTCTAAGATGACGAGCATGGTCGGGCTTCCTTCGGATCATGCTTTAGTGCAGGATGATGA 934
||| || ||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||
Sbjct 839 TTCAAAAATGACCAGCATGGTCGGGCTTCCTTCGGACCATGCCTTAGTGGAGGATGATGA 898
Query 935 GTGCTTAAGGTGGGTGAAACGGTATGCAGAAGACCAAGACAAGTTCTTCGAAGACTTCA- 993
|||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||
Sbjct 899 GTGCTTAAGGTGGGTGAAACTATATGCGGGAGACCAAGACAAGTTCTTCGAAGACTTCAA 958
Query 994 CAAATGCTTATATCAAACTAGTAAATTCTGGGGCCAAATGGAATATGTTATGATATCTA 1052
||| |||||||||||||||||| |||||||||||||||||||||| |||||||| ||||
Sbjct 959 CAA-TGCTTATATCAAACTAGTTAATTCTGGGGCCAAATGGAATAAGTTATGATGTCTA 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45251902479
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5