BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32330.1
Length=1938
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491495 jgi|Araly1|491495|fgenesh2_kg.7__928__AT4G32330.1 2431 0.0
Ahg481399 jgi|Araly1|481399|fgenesh2_kg.4__459__AT2G25480.1 486 2e-136
> Ahg491495 jgi|Araly1|491495|fgenesh2_kg.7__928__AT4G32330.1
Length=1643
Score = 2431 bits (1316), Expect = 0.0
Identities = 1515/1609 (94%), Gaps = 22/1609 (1%)
Strand=Plus/Plus
Query 79 CAAGAACAAATCGAAATCTCAACTCTGTGAAAACCTCGTCCTTGTTCTTCTTCTGCTTCT 138
|||||||||||||||||||||||||| || |||||||||||||| ||| | | | | |
Sbjct 1 CAAGAACAAATCGAAATCTCAACTCTATG-AAACCTCGTCCTTG---TTC-T-T-C-T-T 51
Query 139 CCCATTCCTTCGATTTTTGCTTCAATGGATGTTTGATTTGCT-CTCTGACTGCGTTTGTT 197
| || ||||||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct 52 --C-TT-CTTCGATTTTTGCTTCAATGGATGTTTGATTTG-TCCTGTGACTGCGTTTGTT 106
Query 198 TACTATACTATGGACCCTGAGAGTATCATGGCTGCTGATGGGACTGATTCTGCTCCTGCA 257
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 107 TACTATACTATGGACCCCGAAAGTATCATGGCTGCTGATGGGACTGATTCTGCTCCTGCA 166
Query 258 AATGGTGGTTTAGCAATGGAAAATGTATGTGTTAAAGAAAATGGGGCTGTTTCTGTCGAA 317
||||||| |||| | ||||||| ||||||||||||||| ||||||| |||||||||||||
Sbjct 167 AATGGTGCTTTAACTATGGAAAGTGTATGTGTTAAAGAGAATGGGGTTGTTTCTGTCGAA 226
Query 318 ACCGTGGACACTACTTCAGAAAGTCAGAATGAGAATTCGGCAAACAGTTCCACTTTGGAT 377
|||||||| ||||||||||||||||||||||||||||||| |||||||||||| || |||
Sbjct 227 ACCGTGGATACTACTTCAGAAAGTCAGAATGAGAATTCGGGAAACAGTTCCACCTTCGAT 286
Query 378 ACAATTGAACACGTCAAGGAGGCAGCTGAGGGCACACAAGTTGAACATGTAGATGATTCA 437
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 287 GCAATTGAACACGACAAGGAGGCAGCTGAGGGCACACAAGTTGAAAATGTAGATGATTCA 346
Query 438 AAGTGTATGAAAGGC-GAAAAAGCTCAACGGAAGCCAAGGCATGAGAAACTATCAGGTGG 496
|||||||||||| | ||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 347 AAGTGTATGAAA-CCGGAAAAAGCTCAACGGAAGCTAAAACATGATAAACTATCAGGTGG 405
Query 497 TAAGAATAATTCATCGGTTCACATCAAAAAGAGCAAAGAGGGCAAAAGTGCAGATGCTAA 556
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 406 TAAGAATATTTCATCGGTTCACATCAAAAAGAACAAAGAGGGCAAAAGTGCAGATGCTAA 465
Query 557 AGTGGCAGCATCAAATGGTTCTGTTGCTCCTAATGTACAGACAACAAATCCTCTTAAGAG 616
|||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||
Sbjct 466 AGTGGCAGCATCAAATGGTTCTGTTGCTCCTATTGCACAGACAACAAAGCCTCTTAAGAG 525
Query 617 CAAATCATTCAATGGGCGAGAGGCACAAGTCACAAAGCAAGGGAAGCATGACTCTGCACC 676
||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 526 CAAATCATTCAATGGTCGAGAGGCTCAAGTCACAAAGCAAGGGAAGCATGACCCTGCACC 585
Query 677 TGCTGAAAGCGCTGATGGGGAGAAGGTGAAACCAAAGTCTCAAAAGAAACAAGCCCATGA 736
|||||||| || || ||||| ||||||||| ||||| |||||||||||||| |||||||
Sbjct 586 AGCTGAAAGTGCCGACGGGGACAAGGTGAAATCAAAGCCTCAAAAGAAACAAACCCATGA 645
Query 737 GACATCTGAAGATGATACTCAGTCTTCTAATAGTCCGAAAGCAGACGATGGAAAACCTCG 796
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 646 GACATCTGAAGATGATACTCAGTCATCTAATAGTCCGAAAGCAGACGATGGAAAACCTCG 705
Query 797 TAAAGTTGGTGCACTTCCAAATTATGGATTCAGTTTCAAATGTGACCAACGGGCTGAAAA 856
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 GAAAGTTGGTGCACTTCCAAATTATGGATTCAGTTTCAAATGTGACCAACGGGCTGAAAA 765
Query 857 GAGAAAAGAGTTCTATGTTAAGCTTGAGGAGAAGACTCATGCAAAAGAAGAGGAAATTAA 916
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 766 GAGAAGAGAGTTCTATGTTAAGCTCGAGGAGAAGACTCATGCAAAAGAAGAGGAAATCAA 825
Query 917 TAGCATGCAAGCCAAGTCCAAGGAAACACAAGAAGCTGAGCTTAGGATGCTAAGGAAGAG 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 TAGCATGCAAGCCAAGTCCAAGGAAACACAAGAAGCTGAGCTTAGGATGCTAAGGAAGAG 885
Query 977 TTTGAACTTCAAAGCCACACCTATGCCTAGCTTTTATCAAGAACCTCAGCCGCCTAAAAC 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 TTTGAACTTCAAAGCCACACCTATGCCTAGCTTTTATCAAGAACCTCAGCCGCCTAAAAC 945
Query 1037 AGAGTTAAAGAAGATACCACCAACGAGACCAAAATCTCCAAAACTCGGGCGAAAGAAGAC 1096
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 946 AGAGTTAAAGAAGATACCACCAACGAGACCCAAATCACCAAAACTCGGGCGAAAGAAGAC 1005
Query 1097 TGCTTCTGGAGCAGATTCTGAAGAAACTCAAACCCCTCGCCTTGGTAGGCTAAGCCTAGA 1156
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 TGCTTCTGGAGTGGATTGTGAAGAAACTCAAACCCCTCGCCTTGGTAGGCTAAGCCTAGA 1065
Query 1157 TGAGAGAGCTTCTAAAGATAACCCAACTGCAAAGGGAATTATGCCAACAGTTGATCTGAA 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1066 TGAGAGAGCTTCTAAAGATAACCCAACTGCAAAGGGAATTATGCCAACAGTTGATCTTAA 1125
Query 1217 GAAGCAACCTGTGCGCAAGTCACTTCCAAGATTGCCATCTCAGAAAACAGTTCTCCCCGA 1276
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1126 GAAGCAACCTGTGCGCAAGTCACTTCCAAGATTGCCATCTCAGAAAACAGCTCTCTCCGA 1185
Query 1277 TGGAAAACCCGCCCCAGCAAAAGCTGCCA-TAATCCCAGCAAAGGT-AAGACCTGAGAAA 1334
||||||||| ||||||||||||| ||||| || || |||||||||| || ||||||||||
Sbjct 1186 TGGAAAACCAGCCCCAGCAAAAGTTGCCACTA-TCTCAGCAAAGGTGAA-ACCTGAGAAA 1243
Query 1335 AAGAAACTTGAAAAAGATGCAGAAACCGTAAACCAGACTTCACATCCCACAGAAGAGGAA 1394
|||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1244 AAGAAACTTGAAAAAGATACAGAAACCGTAAACCAGTCTTCACATCCCATAGAAGAGGAA 1303
Query 1395 GCACAAGTGACAGTATCATCCAATGCTGATGTAGAAGATTCACATGAGACTGTATCTCCA 1454
|||||| |||| |||| |||||||||||||| ||||||||| ||||||| || |||||||
Sbjct 1304 GCACAAATGACTGTATTATCCAATGCTGATGCAGAAGATTCGCATGAGATTGCATCTCCA 1363
Query 1455 AGGATGAATGAAGACAGAGCCGACAAGTCCATTGAGGTATCTGAAGCGGTTGCTGTTGAG 1514
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1364 AGGATGAATGAAGACAGAGCCGACAAGTCCATTGAGGTATCTGAAGCCGTTGCTGTTGAG 1423
Query 1515 CATTAAAAACTCTGCGGTACGATCATTACTCTCAAGACTCATCATATCTCTTGCATTAAG 1574
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1424 CATTAAAAACTCTGCAGTACAATCATTACTCTCAAGACTCATCATATCTCTTGCATTAAG 1483
Query 1575 TAAGGAGGACAAGAGAGAAAGAAACCGTATAATATTTATATATATCTTCAGCCAAAACTT 1634
|||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1484 TAAGGAGGACAAGAGAAAAAGAAACCGTATAATATTTATATATACCTTCAGCCGAAACTT 1543
Query 1635 ATATGAGAAGAGATGGGTAAAAAGAGTGGACAGAA-TCATGTGGATTTG 1682
|||||||||||||||||||||||||||||| |||| |||||||| ||||
Sbjct 1544 ATATGAGAAGAGATGGGTAAAAAGAGTGGAAAGAAATCATGTGGGTTTG 1592
> Ahg481399 jgi|Araly1|481399|fgenesh2_kg.4__459__AT2G25480.1
Length=1542
Score = 486 bits (263), Expect = 2e-136
Identities = 519/637 (81%), Gaps = 39/637 (6%)
Strand=Plus/Plus
Query 548 AGATGCTAAAGTGGCAGCATCAAATGGTTCTGTTGCTCCTAATGTACAGACAACAAA-TC 606
||||| ||||||| |||||||||||||| |||||||| || |||| | ||| |
Sbjct 348 AGATGGGAAAGTGGTGGCATCAAATGGTTCGGTTGCTCCAAACGTACCTCCCGTAAAGT- 406
Query 607 CTCTTAAGAGCAAATCATTCAATGGGCGAGAGGCACAAGTCACAAAGCAAGGGAAGCATG 666
||| |||||||||||| |||||| ||||||| || ||||| ||||| |||||| |||
Sbjct 407 CTCCTAAGAGCAAATCGCTCAATGTTAGAGAGGCTCATGTCACGAAGCATGGGAAGAATG 466
Query 667 ACTCTGCACCTGCTGAAAGCG-CTGATGGGGAGAAGGTGAAACCAAAGTCTCAA-AA-GA 723
||||| |||| |||| ||||| | | |||| || | ||| | | | ||| || ||
Sbjct 467 ACTCTACACCAGCTG-AAGCGAC-CA--GGGACAA-GCCAAAACTGA-TGGCAACAAGGA 520
Query 724 AACAAGCCCATGAGACATCTGAAGATGATACTCAGTCTTCTAATAGTCCGAAAGCAGACG 783
|||||| | |||| ||||||||||||||||| ||||| || || | | ||| | | |
Sbjct 521 AACAAGTCAATGATACATCTGAAGATGATACGCAGTC-TCCAA-A---AG-AAG-A-A-G 571
Query 784 ATGGAAAACCTCGTAAAGTTGGTGCACTTCCAAATTATGGATTCAGTTTCAAATGTGACC 843
|||| ||||||||| || | |||||||||||||||||||||||||||| | ||||||||
Sbjct 572 ATGGCAAACCTCGTCGAGCTAGTGCACTTCCAAATTATGGATTCAGTTTTAGATGTGACC 631
Query 844 AACGGGCTGAAAAGAGAAAAGAGTTCTATGTTAA-GCTTGAGGAGAAGACTC-ATGCAAA 901
|||| |||||||| |||| |||||||||| | || ||||||||| || | || |||| ||
Sbjct 632 AACGAGCTGAAAAAAGAAGAGAGTTCTAT-TCAAAGCTTGAGGAAAAAA-TCCATGCGAA 689
Query 902 AGAAGAGGAAATTAATAGCATG--CAAGCCAAGTCCAAGGAAACACAAGAAGCTGAGCTT 959
||||||||||| |||| | || |||||||||||||||||||| |||||||||||||||
Sbjct 690 AGAAGAGGAAAAGAATA-C-TGTACAAGCCAAGTCCAAGGAAACCCAAGAAGCTGAGCTT 747
Query 960 AGGATGCTAAGGAAGAGTTTGAACTTCAAAGCCACACCTATGCCTAGCTTTTATCAAGAA 1019
| |||||||||||| ||| |||||||||||||||| || ||||||| ||| |||||||||
Sbjct 748 AAGATGCTAAGGAAAAGTCTGAACTTCAAAGCCACGCCAATGCCTACCTTCTATCAAGAA 807
Query 1020 CCTCAGCCGCCTAAAACAGAGTTAAAGAAGATACCACCAACGAGACCAAAATCTCCAAAA 1079
|| ||| ||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 808 CCCCAGTTACCTAAAACAGAGTTAAAGAAGATACCAACGACAAGACCAAAATCTCCAAAA 867
Query 1080 CTCGGGCGAAAGAAGACTG-CTTCTGGAGCAGATTCTGAAGAA---A---CT---CAAAC 1129
|||||||| |||||||||| || | |||||||||||||||||| | || |||||
Sbjct 868 CTCGGGCGGAAGAAGACTGACTCC-GGAGCAGATTCTGAAGAAGCCATTACTATTCAAAC 926
Query 1130 CCCTCGCCTTGGTAGGCTAAGCCTAGATGAGAGAGCT 1166
||||| |||||||||| ||| ||||||||||||||
Sbjct 927 CCCTCTTATTGGTAGGCTGAGCTTAGATGAGAGAGCT 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72828548440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5