BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32340.1
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491493 jgi|Araly1|491493|fgenesh2_kg.7__926__AT4G32340.1 732 0.0
> Ahg491493 jgi|Araly1|491493|fgenesh2_kg.7__926__AT4G32340.1
Length=898
Score = 732 bits (396), Expect = 0.0
Identities = 467/501 (93%), Gaps = 6/501 (1%)
Strand=Plus/Plus
Query 1 GGAAACTCCATGATATTTTTGCAGTCTAAATATCTTTTCATCTCTCTTCTCTTCCTCCAC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 GGAAACTCCATGATATTTTTGCAGTCTAAATATCTTTTCATCTCTCTTCTCTCCCTCCAC 60
Query 61 TGAAATATT-CCCCACAAGAACTAACAAT--GATAATGAGAAGCGCGTCTTCACTGGACC 117
||||| ||| ||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 61 TGAAA-ATTTCCCCACAAGAACTAACAATATGATAATGAGAAGCGCGTCATCACTGGACC 119
Query 118 TTAACCTACGCGCCGCCCAGAAACCGTCTGTTCCAAGGGTGGTAACCACGGCTCGAACCG 177
|||||||||||||||||||||||||||| | |||| | |||||||| |||||||||||||
Sbjct 120 TTAACCTACGCGCCGCCCAGAAACCGTCGGCTCCACGTGTGGTAACGACGGCTCGAACCG 179
Query 178 TCTCTGCTGCTACTCCTCGTGTTGCTAAACCGATTACAAGAGCTTCTTCAGATGGAAACC 237
|||||||| || ||||||||||||||||| ||||||| |||||||||||||||||||| |
Sbjct 180 TCTCTGCTTCTCCTCCTCGTGTTGCTAAATCGATTACGAGAGCTTCTTCAGATGGAAATC 239
Query 238 TCTACAAGATTCAGTCGCCGGAGAGCATAACGAAAACCATCAGCGTATATCACGAAGAAA 297
| ||||||||||||||| ||||||||| ||||||||| |||||||| || ||||||||||
Sbjct 240 TTTACAAGATTCAGTCGTCGGAGAGCAGAACGAAAACGATCAGCGTTTACCACGAAGAAA 299
Query 298 CGGCGTCTT-TGAGGGTTTTGGAAGGATCTCGACTCCCCCAAGGAGGTTCCAAcggtgga 356
| ||||| | | |||||||||||||||||| | ||| |||| ||||||||||||||||||
Sbjct 300 CTGCGTCGTAT-AGGGTTTTGGAAGGATCTTGGCTCACCCATGGAGGTTCCAACGGTGGA 358
Query 357 tttggtggtagaggcggagatggtgccggaggtggcggtggaggtggaggtgggagCGTA 416
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 359 TTTGGTGGTAGAGGCGGAGATAGTGCCGGAGGTGGCGGTGGAGGTGGAGGTGGGAGCGTA 418
Query 417 GATGGTTATTACGAAGAGATGATCCAACGTTATCCCGGAGACACTCTCCTTCTCTCTAAC 476
||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 419 GATGGTTATTATGAAGAGATGATCCAACGTTATCCCGGTGACACTCTTCTTCTCTCTAAC 478
Query 477 TACGCTCGTTTCCTCAAAGAG 497
|||||||||||||||||||||
Sbjct 479 TACGCTCGTTTCCTCAAAGAG 499
Score = 566 bits (306), Expect = 1e-160
Identities = 380/414 (92%), Gaps = 12/414 (3%)
Strand=Plus/Plus
Query 534 GAGAGAGCGATGTTGTCTGAGAGTGGAAGAGATGGAGAGTTACTGTCTATGTATGGAGAT 593
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 497 GAGAGAGCAATGTTGTCTGAGAATGGAAGAGATGGAGAGTTACTGTCTATGTATGGAGAT 556
Query 594 TTGATATGGAAAAATCATGGAGACGGTGTTCGTGCTCAGTCTTACTATGATCAAGCTGTT 653
||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||
Sbjct 557 TTGATATGGAAAAATCATGGAGATGGTGTTCGTGCTCACTCTTACTTTGATCAAGCTGTT 616
Query 654 CAATCTTCTCCTGATGACTGTAATGTTCTTGCGTCGTATGCTCGGTTTCTATGGGATGCT 713
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 617 CAATCTTCTCCTGATGACTGTCATGTTCTTGCGTCTTATGCTCGGTTTCTATGGGATGCT 676
Query 714 GAAGAAGAAGTGGAAGAGGAAGAGAGTAAACATCATGAGGATGGTTTCTCTGACTCTACC 773
|||||||||| |||||||||||| ||||||||| || | ||| ||||| |||||||
Sbjct 677 GAAGAAGAAGAGGAAGAGGAAGAAAGTAAACATG--GAA-ACGGTCTCTCTTTCTCTACC 733
Query 774 TATAACCCATCTGTATCAGTTGTGTCTTGACTCTTTGTGCTGATGTTAAACCGGTGTAAT 833
||||||||||| ||| | ||||||||||| |||||||||||||||||||||||||||
Sbjct 734 TATAACCCATC---ATC--T-GTGTCTTGACTATTTGTGCTGATGTTAAACCGGTGTAAT 787
Query 834 ACAATGAAAACTCAAAGGTCCGGTTTAATCAGGAAAATATCTTCTGCACACATTGAAGTA 893
||||| |||||||||| |||||||||| |||||||||||||||||||| | |||||| |
Sbjct 788 ACAATAAAAACTCAAAAGTCCGGTTTAGTCAGGAAAATATCTTCTGCATA--TTGAAGCA 845
Query 894 GATTGATGCTAATGTGTATCAAAAGGTCCAAAGCCGCATTATTGTTGCAAAATG 947
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 846 GATCGATGCTAATGTGTATCAAAAG-TCCAAAGCCGCATTATTGTTGCAAAATG 898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35644927395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5