BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32342.1
Length=486
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944728 jgi|Araly1|944728|scaffold_700957.1 353 5e-97
> Ahg944728 jgi|Araly1|944728|scaffold_700957.1
Length=469
Score = 353 bits (191), Expect = 5e-97
Identities = 226/243 (93%), Gaps = 2/243 (1%)
Strand=Plus/Plus
Query 40 AGCATAAACTGTTTCGGATGCTGCAACAGAGAAAGGCGTTTAGTTGTGGAAGTCGATGAG 99
|||||||||||||||||||||||||| |||||||| | |||||||||||||||||||| |
Sbjct 174 AGCATAAACTGTTTCGGATGCTGCAATAGAGAAAGACCTTTAGTTGTGGAAGTCGATGCG 233
Query 100 CCATCAAAGGGACTCAAAATCCAAGGAAAGATAGTGAAGAAAGATAGTGCTTCATCAGAT 159
|||||||||||| ||||||||||||||| | |||||||||||||| ||| ||||||||||
Sbjct 234 CCATCAAAGGGATTCAAAATCCAAGGAAGGGTAGTGAAGAAAGATGGTGGTTCATCAGAT 293
Query 160 -GACTTCTGGAGCACAAGTACGTGTGATATGGACCACAATATAACGATTCAGTCCCAATC 218
| | |||||||||||||||| |||||||||||||||||||| ||||||| |||||||||
Sbjct 294 GGTC-TCTGGAGCACAAGTACATGTGATATGGACCACAATATCACGATTCGGTCCCAATC 352
Query 219 TTCAAACCCGCCTTTTGATCCCCAATGCAGCACAAGCAACTCTACCGAATTTGTAAACCA 278
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 353 TTCAAACCCGCTTTTTGATCCCCAATGCAGCACAAGCAACTCTACCGAATTTGTGAACCA 412
Query 279 TGG 281
|||
Sbjct 413 TGG 415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17627882118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5