BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32350.1
Length=2635
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944727 jgi|Araly1|944727|scaffold_700956.1 3419 0.0
> Ahg944727 jgi|Araly1|944727|scaffold_700956.1
Length=2241
Score = 3419 bits (1851), Expect = 0.0
Identities = 2115/2245 (94%), Gaps = 8/2245 (0%)
Strand=Plus/Plus
Query 147 GGAATCGTAACAGATCAAAAAGATGTTTGATGGTTTCTTAGGCCGCGGATTTGCTCCCAA 206
|||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 GGAATCGTAAGAGATTAAAAAGATGTTTGATGGTATCTTAGGCCGCGGATTTGCTCCCAA 60
Query 207 GGGAAAACCACTGATAAAACTGACTAAGAATCGGATCGATGTTCTCCGGAGGAAAAGGAA 266
||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 61 GGGAAAACCACTGATAAAACTGACTAAGAATCGGATCGATGTTCTTCGGAGGAAGA-GAA 119
Query 267 -TGCTACGATAAAGTTTCTGAAGAGAGATTTGGCTGATCTGATCATTAACGGTCATGACT 325
||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 120 CTGCTACGATCAAGTTTCTGAAGAAAGATTTGGCTGATCTGGTCATTAACGGTCATGACC 179
Query 326 ACAATGCTTTTAGCAGGGCAGGAGGGCTTCTTGATGAACTAAGGTATCTCTGGAGTCTCG 385
|||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 180 ACAATGCTTTTAGCAGAGCAGGAGGGCTTCTTGATGAGCTAAGGTATCTGTGGAGTCTTG 239
Query 386 ACTTTGTCGAGCAGACCTGTGATTTCGTATACAAGCAGCTCTCTACCATGCAAAAGACGC 445
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 240 ACTTTGTTGAGCAGACCTGTGATTTCGTTTACAAGCAGCTCTCTACCATGCAAAAGACGC 299
Query 446 CGGAATGTCCAGAAGATTGCCGTGAAGCTATCTCCTCGTTAATGTTTGCAGCCTCTGGAT 505
||||||||||||||||||| ||| ||||| | ||||||||||||||||||||||| ||||
Sbjct 300 CGGAATGTCCAGAAGATTGTCGTCAAGCTGTATCCTCGTTAATGTTTGCAGCCTCGGGAT 359
Query 506 TTTCCGAGTTGCCTGAGCTGCGTGAATTGAGGCAAATGTTTCACGAAAAATACACAGATT 565
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 360 TTTCCGAGTTGCCTGAGCTGCGTGAACTGAGGCAAATGTTTCATGAAAAATACACAGATT 419
Query 566 CACTTGCATTGTTTGTCAACCAGGAGCTTGTTGAGAATATGTCATCCAAGCCCTTTTCTA 625
|||||||||||||||||||||| ||||||||||||||||||||||| || || ||||||
Sbjct 420 CACTTGCATTGTTTGTCAACCAAGAGCTTGTTGAGAATATGTCATCAAATCCATTTTCTC 479
Query 626 TGGAGAAGAAAGTGAAGTTAATGGAAGATGTTGCATTGGAGT-TCTCTATTCGTTGGGAT 684
||||| |||||||||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct 480 TGGAGCAGAAAGTGAAGTTAATGGAAGATGTTGCATCGGAGTAT-TCTATTCGTTGGGAT 538
Query 685 TCTAAAGATTTCGAGAAGAGGATTGTGAGACAGAATAGTATTTCAGTAATGGAGACCCCA 744
||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 539 TCTAAAGATTTTGAGAAGAGGATTGTGAGACATAATAGTATTTCAGTAAAGGAGACCCCA 598
Query 745 AAAAGCACCAACGACAAGTATAAGCCTG-TAGACAGAAACATGGCCTTGCCAAAAAGAGA 803
|||||||| |||||| ||| ||||||| || |||||||||||||||||||||||||| |
Sbjct 599 AAAAGCACTTACGACATGTACAAGCCTGTTA-ACAGAAACATGGCCTTGCCAAAAAGACA 657
Query 804 AGAGTTTGAAGGTTCTGAAAATGGGGTTAGCTTGAACAGAAAAACGGCTGAGGCATCAGA 863
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 658 AGAGTTTGAAGGTTCTGAAAATGGGGTTAGCTTGAACAGAAAAATGGCTGAGGCATCAGA 717
Query 864 AAGAAGAGATCCTTTGTTTCAATCTGATAAAGAAAGTTATCAGAATGGTCTCAGAGGAAA 923
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 718 AAGAAGAGATCGTTTGTTTCAATCTGATAAAGAAAGTTATCAGAAGGGTCTCAGAGGAAA 777
Query 924 TCAGCGTGGGCTAACATATAAAGAAAGGTCAGAGAATGTTCTTCACGCCTCTAGATCGGA 983
||| | ||||||||||| ||||||||||||||| ||||||| ||||||||| ||||| ||
Sbjct 778 TCATCATGGGCTAACATCTAAAGAAAGGTCAGATAATGTTCGTCACGCCTCCAGATCCGA 837
Query 984 AAGCAAAGACAATAAGGCCGAAAGGAAAGAGTTTTATCTGCATTCTAAGCAAAACCCTGC 1043
|||||| ||||||||||| |||||||||||||||||| |||||||||||||| |||||||
Sbjct 838 AAGCAAGGACAATAAGGCAGAAAGGAAAGAGTTTTATTTGCATTCTAAGCAAGACCCTGC 897
Query 1044 TAGAGAAAAACATCAGCCTATTTTTAACGAAGGTGACACTATAGTGATGAAGGTCAACTA 1103
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 898 TAGAGAAAAACATCAACCTATTTTCAACGAAGGTGACACTATAGTGATGAAGGTCAACCG 957
Query 1104 TGGGAATCTCGGTCAAGGGAATGGACATCGACCTGGTGTAGTTGATGCGCATAAGAAAAC 1163
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 958 TGAGAATCTCGGTCAAGGGAATGGACATCGGCCTGGTGTAGTTGATGCGCATAAGAAAAC 1017
Query 1164 CGAGTTTGTTGCCTCAGAAAGGAAAGAGTTTTAT-TCGCAATCTAAGCAAGAACCTTCTA 1222
|||| |||||||||||||||||||||||| |||| | |||||||||||||||||||||||
Sbjct 1018 CGAGGTTGTTGCCTCAGAAAGGAAAGAGTATTATAT-GCAATCTAAGCAAGAACCTTCTA 1076
Query 1223 GAGAAAGACATCAACCTATTTTTAATGATGGTGACACTATTGTAATGAAGGTCAAGCATG 1282
|||||| || |||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1077 GAGAAATACCTCAACCTATTTTTAATGAAGGTGACACTATCGTAATGAAGGTCAAGCATG 1136
Query 1283 AGAACCACGTTCAAGGGAATGGACATAAAAATGGTGTAGTTGATCTGCATAAGAAAATAG 1342
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1137 AGAACCACGCTCAAGGGAATGGACATCAAAATGGTGTAGTTGATCTGCATAAGAAAACAG 1196
Query 1343 AGGTTAATGCTTCAGAGAAACTTAAGTCTAGCAGCAGCAAAAGAGCTGACAAGTTAGTTA 1402
|||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||||||||
Sbjct 1197 AGGTTATTGCTTCAGAGAAACTTAAGCCTAGCAGCACCAAAAGAGCCGACAAGTTAGTTA 1256
Query 1403 TCGGCTTTAAACAAGAGAGTTTCTTTCAAGGGTACAAACATGAGAAAAATGAAGAGCATG 1462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TCGGCTTTAAACAAGAGAGTTTCTTTCAAGGGTACAAACATGAGAAAAATGAAGAGCATG 1316
Query 1463 CACATCAGAAAGTGGAAGATAGTACCTCAAGACCTCCGAAGCCAAATAGCAAGTCAAAGA 1522
|||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1317 CACATCAGAAAGTGAAAGATAATACCTCAAGACCTCCGAAGCCAAGTAGCAAGTCAAAGA 1376
Query 1523 GAGCGGAATCTATCAATCCAGGTTCGAGACATCATAATGATCGGGAGAGTAAAGAAAATG 1582
|||||||||||||| |||||||||||||||||| |||||||| |||||||||||| ||||
Sbjct 1377 GAGCGGAATCTATCGATCCAGGTTCGAGACATCGTAATGATCTGGAGAGTAAAGAGAATG 1436
Query 1583 CAGTTCTTGTGGGAAAGAGCACCGAAGAAGATCCATCTGGTGATAATGTTAAGGGTGGAG 1642
|||||||||||||||||||||| ||||||||||||| ||||| ||| |||||||| || |
Sbjct 1437 CAGTTCTTGTGGGAAAGAGCACGGAAGAAGATCCATATGGTGGTAACGTTAAGGGGGGTG 1496
Query 1643 AATACGAATATGATCATGCAAATCCAGCAAGGAAAGTTGAGGAGCGAGAAACAGAGAGAA 1702
||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TATATGAAAATGATTATGCAAATCCAGCAAGGAAAGTTGAGGAGCGAGAAACAGAGAGAA 1556
Query 1703 TGAAATCACCCTTCTACAAATCCCTTCCACCTCCGTATGTTAAAAAATCTATTGCTAAAG 1762
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1557 TGAAATCACCCTTCTACAAATCCCTTCCACCTCCGTATATTAAAAAATCTAGTGCTAAAG 1616
Query 1763 CAAGGCATGAAAAAGCTGAAGCTTTAGATAATCCAAAGGCTCGTTTTGATGGTGAAGAAG 1822
||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1617 CAAGGAATGAAAAAGCTGAAGCTTCAGATAATCCAAAGGCTCGTTTTGGTGGTGAAGAAG 1676
Query 1823 GAAATCATCCAGACAATGGTAAAAATGTTTATGGGGCAGAGAGACGAAATGGAGCAGGTC 1882
|||||||||||||||||| ||| |||||||| |||||||||||| |||||| ||||||||
Sbjct 1677 GAAATCATCCAGACAATGATAAGAATGTTTACGGGGCAGAGAGAGGAAATGAAGCAGGTC 1736
Query 1883 ATCATGAAGTGAATGACATAGACAATGCATCTCTGAAACGGCAAACTAACAGAAGAAAGC 1942
|||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||| |
Sbjct 1737 ATCATGAAGTGAATGACATAGATAATCCATCTCTGAAACGGCGAACTAGCAGAAGAAAAC 1796
Query 1943 ACATTGTAGAATCGGGAGGTGATGATCACATAAGTAGCCGAAGAAGGGAAAACTCAAGGA 2002
||||||||||||| || ||||||||||| | ||| |||||||||||||||||| ||||||
Sbjct 1797 ACATTGTAGAATCTGGTGGTGATGATCATACAAGAAGCCGAAGAAGGGAAAACGCAAGGA 1856
Query 2003 AAGGCCTTCAAGTCTTAATTGACGAGGATGAGAAAGACAGTGAGGAGAAGATGATGGATA 2062
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1857 AAGGCCTTCAAGTCTTAATTGATGAGGATGAGAAAGACAGTGAGGAGAAGATGATGGATA 1916
Query 2063 AACTTCTGATGCATTACAGTAAAAAACCTTCAAGCTATGAAAAGGACAATGTGCAAGAAG 2122
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1917 AACTTCTGATGCATTACAGTAAAAAACCTTCAAGTTATGAAAAGGACAATGTGCAACAAG 1976
Query 2123 AATCCAAAAGCAGACGTACCCATCTTAAAAAAGGTGAATCTGATGAAGAGATGATGATTC 2182
|||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1977 AATCCAAAAGCAGACGCACACATCTAAAAAAAGGTGAATCTGATGAAGAGATGATGATTC 2036
Query 2183 ATCAGCCGGCTCGGTCACGGTCTCTACCCGCTGAACAGTTGGCCGGGCCATCTGAACCTG 2242
|||| |||||||||||||| ||||||||| ||||||| |||||||||||||||||||||
Sbjct 2037 ATCAACCGGCTCGGTCACGTTCTCTACCCCCTGAACACTTGGCCGGGCCATCTGAACCTA 2096
Query 2243 CAAAAACATTTGCCCGTGCAGCCTCGTTTCAGCCAGAACGTTCCAGTGAAGCTAAGCACG 2302
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 2097 CAAAAACATTTGCCCGTGCTGCCTCGTTTCAGCCAGAACGTTCGAGTGAAGCTAAGCACG 2156
Query 2303 TTCACCCCAAGTTACCAAACTATGACGATTTGGCTGCCAGATTTGCAGAGCTAAAAGGAA 2362
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2157 TTCACCCCAAGTTACCAAACTATGACGATTTGGCTGCCAGATTTGCAGAGCTTAAAGGAA 2216
Query 2363 GGTAAATATATGAACAGTTGATGCC 2387
|||||||||||||||||||||||||
Sbjct 2217 GGTAAATATATGAACAGTTGATGCC 2241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99377449205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5