BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32360.1
Length=1913
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944726 jgi|Araly1|944726|scaffold_700955.1 2355 0.0
> Ahg944726 jgi|Araly1|944726|scaffold_700955.1
Length=1496
Score = 2355 bits (1275), Expect = 0.0
Identities = 1412/1478 (96%), Gaps = 10/1478 (1%)
Strand=Plus/Plus
Query 234 TTTGAAATTGGTGAAAATGAGTAGATATCTAGCAAGATATATGGTGTCTAGATACTTCTC 293
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 TTT-AAATTGGTGAAAATGAGTAGATATCTAGCAAGATATATGGTGTCTAGATACTTCTC 65
Query 294 TTCTGCTTCTTCCCGTCCTTTACACGTTTGCATCGTCGGAAGTGGACCTGCTGGTTTCTA 353
|||| ||||||||||||| | |||||||||||||| |||||||||||||||||||||||
Sbjct 66 CTCTGTTTCTTCCCGTCCTCTGCACGTTTGCATCGTTGGAAGTGGACCTGCTGGTTTCTA 125
Query 354 TACTGCTGACAAGGTATTGAAGGCGCATGAAGGAGCGCATGTAGATATAATCGATCGATT 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 TACTGCTGACAAGGTATTGAAGGCGCATGAAGGAGCGCATGTAGATATAATCGATCGATT 185
Query 414 ACCTACACCTTTTGGACTTGTTCGGTCTGGTGTTGCCCCTGATCATCCTGAAACTAAGAT 473
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 186 ACCTACACCTTTTGGACTTGTTCGGTCTGGTGTTGCCCCTGACCATCCTGAAACTAAGAT 245
Query 474 TGCCATTAATCAGTTCTCACGTGTCGCACAA-CACGAGCGTTGTTCGTTT-ATTGGGAAT 531
|||||||||||||||||||||||| || ||| ||||||||||| || ||| || ||||||
Sbjct 246 TGCCATTAATCAGTTCTCACGTGTGGC-CAAACACGAGCGTTGCTCTTTTTAT-GGGAAT 303
Query 532 GTAAAGCTGGGATCGGATTTATCACTTTCTGAGCTGCGGGATTTGTATCATGTGGTTGTG 591
|||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 304 GTAAAGCTTGGATCCGATTTATTGCTTTCTGAGCTGCGGGATTTGTATCATGTGGTTGTA 363
Query 592 CTTGCATATGGTGCTGAAAGTGACAAAGATCTTGGCATTCCAGGTGAGAGTTTGAGTGGT 651
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 CTTGCGTATGGTGCTGAAAGTGACAAAGATCTTGGCATTCCAGGTGAGAGTTTGAGTGGT 423
Query 652 ATATACTCTGCAAGAGAATTCGTCTGGTGGTATAATGGGCATCCTGACTACAGTAGTTTG 711
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 424 ATATACTCTGCAAGAGAATTCGTCTGGTGGTATAATGGGCATCCCGACTACAGTAGTTTG 483
Query 712 AAACCTGACTTGAAAACGTCTGACTCAGCTGTCATTCTTGGCCAGGGTAATGTAGCTCTA 771
|||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||| |||
Sbjct 484 AAACCTGACTTGAAAAGGTCCGACACAGCTGTCATTCTTGGCCAGGGTAATGTAGCACTA 543
Query 772 GATGTTGCTCGGATTCTCTTAAGACCGACAACAGAGTTGGCGTCAACTGATATTGCTACA 831
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 544 GATGTCGCTCGGATTCTCTTAAGACCGACAACAGAGTTGGCGTCAACTGATATTGCTAGA 603
Query 832 CATGCTTTATCTGCGCTGAAAGAAAGTTCTATAAGGAAGGTGTATCTCATCGGAAGACGG 891
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 604 CATGCTTTATCTGCGCTGGAAGAAAGTTCTATAAGGAAGGTGTATCTCATCGGAAGACGG 663
Query 892 GGGCCAGTTCAAGCAGCATTGACTGCTAAAGAGCTTCGAGAAGTTCTCGGGATTAAGAAC 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 GGGCCAGTTCAAGCAGCATTGACTGCTAAAGAGCTTCGAGAAGTTCTCGGGATTAAGAAC 723
Query 952 TTGCACATTCGAATAAAGCAGACTGACTTGAGTGTAACTCCTGCTGATGAGGAAGAAATG 1011
||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 724 TTGCAGATTCGAATAAAGGAGATTGACTTGAGTGTAACTCCTGCTGATGAGGAAGAAATG 783
Query 1012 AAAACTAGTAGAGCCAGGAAGAGGATCTATGAATTATTGTCCAAGGCTGCAGCAGCAGCA 1071
|||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 784 AAAAATAGTAGAGCCAGAAAGAGGATCTATGAATTACTGTCCAAGGCTGCAGCAGCAGCA 843
Query 1072 A-A--AACATCCGAAGCAGACCCTGATCAACGAGAGCTGCACTTTGTTTTCTTCCGCCAA 1128
| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 844 GCAGGAACATCAGAAGCAGACCTTGATCAACGAGAGCTGCACTTTGTTTTCTTCCGCCAA 903
Query 1129 CCTGACCAGTTCTTAGAGTCAGATGAAAGAAAGGGACATGTTTCCGGTGTAAACTTGCAA 1188
||||||| |||||| |||||||||||||||||||| |||||||| |||||||||||| |
Sbjct 904 CCTGACCGGTTCTTGGAGTCAGATGAAAGAAAGGGGCATGTTTCGGGTGTAAACTTGGAG 963
Query 1189 AAAACCATTCTTGAAAGTGTTGGAACCGGAAAGCAAATTGCAGTTGGTACAGGAGAGTTC 1248
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 964 AAAACCATTCTTGAAAGTGTTGGAAGCGGAAAGCAAATTGCAGTTGGTACAGGAGAGTTC 1023
Query 1249 GAGGATCTTAACTGCAGTATGGTGCTGAAGGCCATTGGTTACAAGTCTGTTCCAGTCAAT 1308
|||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||
Sbjct 1024 GAGGATCTTAACTGCAGTATAGTGCTGAAGGCCATTGGTTACAAGTCGGTTCCAATCAAT 1083
Query 1309 GGTTTACCATTTGATCACAAGAAAGGTGTTGTCCCAAATGTAAAGGGTCGAGTGGTTAGT 1368
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1084 GGTTTACCTTTTGATCACAAGAAAGGTGTTGTCCCAAATGTAAGGGGTCGAGTGGTTAGT 1143
Query 1369 CACACGTCAGGAGACATATCACAGACTGAA-CCTGGCTTATACGTATGTGGGTGGCTCAA 1427
|| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1144 CAGACGTCAGGAGACATATCACAGACTGAAACC-GGCTTATACGTATGTGGGTGGCTCAA 1202
Query 1428 AAGAGGACCAGTAGGGATAATTGCCACAAACCTCTACTGTGCTGAAGAAACGGTTGGTAG 1487
|||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1203 AAGAGGGCCAGTAGGCATAATTGCCACAAACCTTTACTGTGCCGAAGAAACGGTTGGTAG 1262
Query 1488 CATAAGCGAGGACATTGAAGAAGGTGTTTGGAAGAGCTCAAAAGCAGGAAGCAAAGGACT 1547
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1263 CATAAGCGAAGACATTGAAGAAGGTGTTTGTAAGAGCTCAAAAGCAGGAAGCAAAGGACT 1322
Query 1548 GATGCAATTGCTGGAGAAGAGAAAAGTGAAGAAGGTGGAGTTTAGTGGGTGGGAGAAGAT 1607
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1323 GATGCAATTGCTGGAGAAGAGAAAAGTGAAGAACGTAGAGTTTAGTGGGTGGGAGAAGAT 1382
Query 1608 TGATGCCAAAGAAAAACAAATGGGGATTGAGAGAAACAAGCCCAGAGAAAAATTAGTCAC 1667
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1383 TGATGCCAAAGAAAAACAAATGGGGATTGAGAAAAACAAACCCAGAGAAAAATTAGTCAC 1442
Query 1668 TTGGGAGGATCTATTAGCAGCAGCAGCCAACTAGGGCC 1705
|||||||||||| |||||||||||||||||||||||||
Sbjct 1443 TTGGGAGGATCTTTTAGCAGCAGCAGCCAACTAGGGCC 1480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71876292315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5