BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32370.1
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888873 jgi|Araly1|888873|Al_scaffold_0007_859 1467 0.0
> Ahg888873 jgi|Araly1|888873|Al_scaffold_0007_859
Length=987
Score = 1467 bits (794), Expect = 0.0
Identities = 905/958 (94%), Gaps = 10/958 (1%)
Strand=Plus/Plus
Query 22 ATGAAGGATTTTAAAACATTGTTCTCATTGATTATAGTTATATCATACTATTTCGAATAT 81
||||||||||||||||||||||||||| |||| ||| ||||||| |||||||| |||||
Sbjct 1 ATGAAGGATTTTAAAACATTGTTCTCAGTGATCATAATTATATCCTACTATTTGGAATAC 60
Query 82 GGAGAAGGCCA-AAGAATTCTAAGCATCAAGGATTTTATTA-TTGATACTAATCACACCA 139
||||||||||| || ||||||||||||||||||||||| || || | |||||||||||||
Sbjct 61 GGAGAAGGCCAGAA-AATTCTAAGCATCAAGGATTTTA-TACTTAAAACTAATCACACCA 118
Query 140 TCATTGATTATTCTCAAGCATTTCAAGAAGCATGGAAAGGATTATGCGAAGATGAAACAC 199
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 119 TCATTGATTATTCTCAAGCCTTTCACGAAGCATGGAAAGGATTATGCGAAGATGAAACAC 178
Query 200 CCAACGGCTCAGCTTTAGTGATACGAAAGAACGAAACATATACTTTACAACCATCAACTT 259
||||||| ||||||||||||||||||||||||||||| || ||||||||||||| || ||
Sbjct 179 CCAACGGGTCAGCTTTAGTGATACGAAAGAACGAAACGTACACTTTACAACCATTAATTT 238
Query 260 TTCGAGGTCCATGCGTATCTTCTAACATTCATATTCAGATTGATGGAAAACTCGAAGGGC 319
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 239 TTCGAGGTCCATGTGTATCTTCTAAGATTCATATTCAGATTGATGGAAAACTCGAAGGGC 298
Query 320 CAAGGAAGCCGATATATTGGAAAAACAAAGAAAACAGGAGTTGGTTAGGTTTCAAGGATG 379
||||||||||||||||||||||||||| |||||| | ||||||||||||||||| |||||
Sbjct 299 CAAGGAAGCCGATATATTGGAAAAACACAGAAAAAAAGAGTTGGTTAGGTTTCAGGGATG 358
Query 380 TAGAAGGTCTCGTCATCAACGGCTCAGGAGTTCTTAATCCTCATGGGGAAGCTTGGTGGA 439
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 359 TAGAAGGTCTCGTCATCAACGGCTCAGGAGTGCTTAATCCTCATGGGGAAGCTTGGTGGA 418
Query 440 AATCTGTTAGTCTCTCTAAACGACCAACAACAATTAGTTTTGCGTCATGCA-TGGACATT 498
|||||||||||| ||||||||||||||| ||||||||||||| ||| |||| | ||||||
Sbjct 419 AATCTGTTAGTCACTCTAAACGACCAACGACAATTAGTTTTGAGTCCTGCACT-GACATT 477
Query 499 GTATATAATGGACT-ACATCACATAAATAGTCCAAGAAATCACATTTCAATTTATGGTTG 557
||||||||||||| || ||| |||||||| |||| ||||||||||||||||||||||||
Sbjct 478 ATATATAATGGACTAAC-TCAAATAAATAGCCCAAAAAATCACATTTCAATTTATGGTTG 536
Query 558 CACCAATGCAACTTTATCAAATCTTGATATAAGCGCACCCGAAGACAGTCCAAACACGGA 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 537 CACCAATGCAACTTTATCAAATCTTGATATAAGCGCACCCGAAGACAGTCCAAACACTGA 596
Query 618 TGGCATCAACATTTGTCTTTCACACAGAATCCAAATCTTAGACTCCTCTATTCAAACTGG 677
||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 597 TGGTATCAATATTTGTCTTTCACACAAAATCCAAATCTTAGACTCCTCTATTCAAACTGG 656
Query 678 TGATGATTGTGTTGCAATTACTGGTGGAAGGGGTGGTTCTTCAGATATCAACATTACTGG 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TGATGATTGTGTTGCAATTACTGGTGGAAGGGGTGGTTCTTCAGATATCAACATTACTGG 716
Query 738 TGTAGCATGTGGTCCGGGTCACGGTATCAGTATTGGGAGTTTGGGGAAAGATAATGAGAG 797
||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 717 TGTGGCATGTGGTCCGGGCCACGGTATCAGTATTGGGAGTTTGGGGAAAGATGATGAGAC 776
Query 798 AGATGACATAGTCGAAAACGTGAACGTAAGAAGCTGTAGTTTTACAGGAACTCAAAATGG 857
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 777 AGATGACATAGTCGAAAACGTGATCGTAAGAAGCTGTAGTTTTACTGGAACTCAAAATGG 836
Query 858 AGCAAGAATCAAGACTTGG-AATGGAGGACGAGGGTTGGCCAAAAATATTTTGTATGAAA 916
||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||
Sbjct 837 AGCAAGAATCAAGACTTGGCAA-GGAGGACAAGGGTTGGCCAAAAATATTTTGTATGAAA 895
Query 917 ATATTACATTGATAGATGCTGGATACCCCATCATCATCAATCAACACTATTTTGACAA 974
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 896 ATATTACATTGATAGATGCTGGATACCCCATTATCATCAATCAACATTATTTTGACAA 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38275408668
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5