BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32375.1
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888872 jgi|Araly1|888872|Al_scaffold_0007_858 1672 0.0
> Ahg888872 jgi|Araly1|888872|Al_scaffold_0007_858
Length=1296
Score = 1672 bits (905), Expect = 0.0
Identities = 1070/1149 (93%), Gaps = 13/1149 (1%)
Strand=Plus/Plus
Query 1 ATGGTTCAAATGGCGTTTAAAGAGGCATGGAATGCGTTATGTGAAGCAAATGTGAATGGC 60
|||||||||||||||||||||| ||||||||| || |||||||||||||||| ||| |||
Sbjct 1 ATGGTTCAAATGGCGTTTAAAGGGGCATGGAAAGCATTATGTGAAGCAAATGGGAAAGGC 60
Query 61 ACAACAACATCTCTTGTAATAAATGCCAACGAAACATATATCGTACAACCCCAGTTGTTT 120
| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 61 AAAACAACATCTCTTGTAATAAATGCCAACGAAACATATATCATACAACCCCAATTGTTT 120
Query 121 CAAGGTCCTTGTGCATCTCGTAATATTCATATTCAGATTGATGGAAAACTTGAAGCGCCA 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 CAAGGTCCTTGTGCATCTCGTAATCTTCATATTCAGATTGATGGAAAACTTGAAGCGCCA 180
Query 181 AAGATGGTAAGGGAGTGGGGAAACTACGAAAGTAAATGTTGGTTATGTTTCACAAACGTG 240
|||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 181 AAGATGGTAAAGGAGTGGGGAAACAACGGAAGTAAATGTTGGTTATGTTTCACAAACGTG 240
Query 241 AAAGGTCTCGTCCTCAATGGATCTGGGATTCTCCATCCCCATGGTGAAGCTTGGTGGTCC 300
| |||||||||||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 241 ACAGGTCTCGTCCTCAATGGATCTGGTATCCTCCATCCCCATGGCGAAGCTTGGTGGTCC 300
Query 301 TCTATTGAGCACTCCCACCGACCACGAACAATAGGATTTAGTGGAAGTAGTAACATCT-T 359
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| | |
Sbjct 301 TCTATTGAGCACTCCCACCGACCACGAACAATAGGATTTAATGGGAGTAGTAACAT-TAT 359
Query 360 ATATAATGGGCTCACTCAGATGAATAGCCCAAAGAATCACATTTCTATTTTAGATTGCAC 419
||||||||| || || || ||||||||||||||||||||||||||||||||| |||||||
Sbjct 360 ATATAATGGACTAACCCAAATGAATAGCCCAAAGAATCACATTTCTATTTTAAATTGCAC 419
Query 420 CAACGTAACTTTATCAAACTTCCATCTAATCGCACCGAAAGATAGTCCAAATACTGATGG 479
|||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 420 CAACGTAACTTTATCAAATTTTCATCTAATCGCACCTAAAGATAGTCCAAATACTGATGG 479
Query 480 CATCGATATTGCTCATTCAAACAATATCCGAATTTTCAACTCATCTATCCAAACCGGTGA 539
||| |||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 480 CATTGATATTGCTCTTTCAAACAATATCCGGATTTTTAACTCATCTATCCAAACCGGTGA 539
Query 540 TGATTGTATTGCGATTAATGGTGGTTCGTATGATATCAACATAACTCATGTAGCATGTGG 599
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGATTGTGTTGCGATAAATGGTGGTTCGTATGATATCAACATAACTCATGTAGCATGTGG 599
Query 600 TCCAGGTCATGGCATCAGTATTGGAAGTTTGGGGAGATATAGTGTAAACGATACGGTCCA 659
||||||||||||||||||||||||||||||||||||| | | | |||||||||||| ||
Sbjct 600 TCCAGGTCATGGCATCAGTATTGGAAGTTTGGGGAGAGGTGGGGAAAACGATACGGTACA 659
Query 660 GAACGTAAAAATAAGACACTGCAGCTTCAATGGAACAGAAAATGGAGCAAGAATAAAGAC 719
|||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 660 GAACGTGAAAGTAAGACACTGCAGCTTCAATGGAACAAAAAATGGAGCAAGAATAAAGAC 719
Query 720 TTGGACTGTAAGAGGAGGTCTCGGGGTCGCCAAAAATATATTATACGAGAATATAACATT 779
|||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||
Sbjct 720 TTGGACTG---GAGGA---CAAGGGATCGCCAAAAATATATTATACGAGAATATAACATT 773
Query 780 AACAGATACCAAATATCCTATCATCATCGATCAACATTACTGTAATGGTGGCCACAATTG 839
||||||| |||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 774 AACAGATGCCAATTACCCTATCATCATCGATCAACATTACTGTAATGGTGGCCACAACTG 833
Query 840 TACAAAAGAGGCGATGACTGCTGTGAAAGTGAGCAATGTGACATTTAGATACTTTACAGG 899
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 834 TACAAAAGAGGCGACAACTGCTGTGAAAGTGAGCAATGTGACATTTAGATACTTTAAAGG 893
Query 900 AACATGTGCAAATGATATTGCGATAAAACTAGATTGTGATGAAGTAACGGGTTGTAAAGA 959
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 894 GACATGTGCAAATGATATTGCGATAAAACTAGATTGTGATGAAGTAACTGGTTGTCAAGA 953
Query 960 TATCGTGATGGAACACATCAACATCACTTCTTCATCTACGAAAAGGCCTCTAACCGCATA 1019
|||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 954 TATCGTGATGGAACACATCAACATCACTTCTTCATCTACGAATATGCCCCTAACCGCATA 1013
Query 1020 TTGTCAATTTGCGGATATAATTAGTCACTTTGTCTCCATGAAAATCAAATGTGATTATTA 1079
||||||||||||||||||| |||||||||||||||| ||| | |||||||||| || | |
Sbjct 1014 TTGTCAATTTGCGGATATAGTTAGTCACTTTGTCTCGATGCATATCAAATGTGGTT-TCA 1072
Query 1080 -TGAAGAACCTTTAGTACCAGTTGAACCTCCACAACAGGTTGAACCTCCAACGCCG---A 1135
|||||||||||||||||||||| ||||||||| ||| |||||||||||||||||| |
Sbjct 1073 ATGAAGAACCTTTAGTACCAGTTAAACCTCCACGACATGTTGAACCTCCAACGCCGCCGA 1132
Query 1136 CTAAACCTC 1144
|||||||||
Sbjct 1133 CTAAACCTC 1141
Score = 156 bits (84), Expect = 5e-37
Identities = 105/114 (92%), Gaps = 5/114 (4%)
Strand=Plus/Plus
Query 1300 CCAGCTAAACCTCCACGACACGTTGAACCTCCAA---TGCCGACTAAACCTCCAACCATG 1356
|||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1090 CCAGTTAAACCTCCACGACATGTTGAACCTCCAACGCCGCCGACTAAACCTCCAACCATG 1149
Query 1357 TTTCCTAAACCAT-TGGCACCAGCTAAACCTCCTGTATACTATGCTAAACCTCC 1409
||||||||||| | ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1150 TTTCCTAAACC-TCTGGCACCAGCTAAACCTCCGGTATACTATGCTAAACCTCC 1202
Score = 121 bits (65), Expect = 2e-26
Identities = 91/103 (88%), Gaps = 3/103 (3%)
Strand=Plus/Plus
Query 1214 AACCTCTGGCACCAGCTAAATCTCCACGACACGTTGAACTTCCAA---TGCCGACTAAAC 1270
||||| | | ||||| |||| |||||||||| ||||||| ||||| |||||||||||
Sbjct 1079 AACCTTTAGTACCAGTTAAACCTCCACGACATGTTGAACCTCCAACGCCGCCGACTAAAC 1138
Query 1271 CTCCAACCATGTTTCCTAAACCTCTGGCTCCAGCTAAACCTCC 1313
|||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1139 CTCCAACCATGTTTCCTAAACCTCTGGCACCAGCTAAACCTCC 1181
Score = 117 bits (63), Expect = 2e-25
Identities = 83/92 (90%), Gaps = 3/92 (3%)
Strand=Plus/Plus
Query 1150 CCAGCTAAACCTCCACGACACGTTGGACCTCTAA---TGCCGACTAAACCTCCAACCATG 1206
|||| ||||||||||||||| |||| ||||| || ||||||||||||||||||||||
Sbjct 1090 CCAGTTAAACCTCCACGACATGTTGAACCTCCAACGCCGCCGACTAAACCTCCAACCATG 1149
Query 1207 TTTCCTAAACCTCTGGCACCAGCTAAATCTCC 1238
||||||||||||||||||||||||||| ||||
Sbjct 1150 TTTCCTAAACCTCTGGCACCAGCTAAACCTCC 1181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54659501575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5