BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32380.1
Length=1112
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888871 jgi|Araly1|888871|Al_scaffold_0007_857 1232 0.0
> Ahg888871 jgi|Araly1|888871|Al_scaffold_0007_857
Length=999
Score = 1232 bits (667), Expect = 0.0
Identities = 885/985 (90%), Gaps = 36/985 (4%)
Strand=Plus/Plus
Query 1 ATGGCAAACGACTGGGGAAGGAATAA-ACTTGACTGTTGGTTATGTTTTGAAAAGGTGAC 59
|||||||| ||||||||||| || || | ||| ||||||||||||||||| ||||||||
Sbjct 1 ATGGCAAAAGACTGGGGAAGCAA-AATAAGTGAGTGTTGGTTATGTTTTGAGAAGGTGAC 59
Query 60 AGGCCTCGTTCTCACTGGATCCGGTGTCCTCAATACCCATGGAGAAAGCTGGTGGTCTTC 119
||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 60 AGGTCTCGTTCTCACTGGATCCGGTGTCCTCAATTCCCATGGAGAAAACTGGTGGTCTTC 119
Query 120 TGTTGCTCTCCAATCTCGACCAGTGGCAGTAAGATTTTTTGGATGCCAAAACATTTTATA 179
||||| | ||| |||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 120 TGTTGGTTTCCCCTCTCGACCAGAGGCAGTAAGATTTTTTGGATGCCAAAACCTTTTATA 179
Query 180 TAATGGATTAACTCAGATCAATAGTCCAAGGAATCACATAACGA-TTTTGGATAGCAACA 238
||| |||||||||||||||||||||||||||||||||||| ||| |||||| | ||| ||
Sbjct 180 TAAAGGATTAACTCAGATCAATAGTCCAAGGAATCACATATCGATTTTTGGCT-GCACCA 238
Query 239 ACGCAACTTTATCAAATCTTCATCTAATTGCCCCTGCAAGTAGTCCAAATACTGATGGCA 298
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 239 ACGCAACTTTATCAAATCTTCATCTAATTGCCCCTGCAAATAGTCCAAATACTGATGGCA 298
Query 299 TTGATATCTCTCATTCACAAAATATCAATATTATGAGCTCCACAATCAAAACCGGTGATG 358
||||||||||||||||||| |||||| || || ||||||| |||||||| ||||||||||
Sbjct 299 TTGATATCTCTCATTCACAGAATATCCATGTTTTGAGCTCGACAATCAACACCGGTGATG 358
Query 359 ACTGTGTTGCAATTAAACGTAATTCATACAATATTAACGTAACTTACGTGACATGTGGTC 418
||||||||||||||||| || ||||||| |||||||| ||||||| |||||||||||||
Sbjct 359 ACTGTGTTGCAATTAAAGGTGCTTCATACGATATTAACATAACTTATGTGACATGTGGTC 418
Query 419 CGGGTCATGGCATAAGTATCGGAAGTTTGGGGGAAGGAGGGGCATCTGAGGTAGTACAAA 478
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 419 CGGGTCATGGCATAAGTATCGGAAGTTTGGGGCAAGGAGGGGCATCTGAGGTAGTACAAA 478
Query 479 ATGTGAATGTCAGACATTGCACCTTCACTGGAACACAAAATGGTGCAAGAATCAAGACTT 538
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 479 ATGTGAATGTCAGACATTGCACCTTCAGTGGAACACAAAATGGTGCAAGAATCAAGACTT 538
Query 539 GGCCTGGAGGACAAGGGTTTGTCAAAAATATTTTGTACGAAGATATTACTCTAATAAATG 598
|||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 539 GGCCTGGAGGACGAGGGTTTGTCAAAAATATTTTGTACGAAAATATTACTCTGATAAATG 598
Query 599 CCAACTTCCCCATCATCATCGATCAACAATATCGTGATAATGCTGGTCAATATAAACAAT 658
||||||||||||||||||||||||||||||||| || | ||| ||
Sbjct 599 CCAACTTCCCCATCATCATCGATCAACAATATC---AT----C-----AAT-----CA-- 639
Query 659 CAGCAGGGGCTACTGCTGTGAAAGTGAGCGACGTGACGTTTAGATCATTCACAGGGACTT 718
|||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| |
Sbjct 640 --GCAGGGGCTACTGCTGTGAAAGTGAGCGACGTGACGTTTAAATCTTTCAAAGGGACAT 697
Query 719 GTGCCGCTCCTATTGCAATAAAACTAGATTGTGACCCGA-ATACAGGTTGTGACAACATC 777
||||| | ||| |||||||||| ||||||||||||||| | ||||||||||| ||||||
Sbjct 698 CTGCCGATGCTACTGCAATAAAATTAGATTGTGACCCGACA-ACAGGTTGTGATAACATC 756
Query 778 GTGATGGAACAAATCAATATCGCTTCTTCATCTCCGAAAACGCCGCTCACCTCGTACTGC 837
|||||||| || |||||||||| |||||||||||||| |||||| |||||||||||||||
Sbjct 757 GTGATGGACCACATCAATATCGTTTCTTCATCTCCGAGAACGCCACTCACCTCGTACTGC 816
Query 838 AAATTTGCGCATGTCGTTAGTCGCTTTGTCTCCATTCCCATA-ACCTGT-AGTTTTCATA 895
|||||||||||||| |||||||| |||||||||||| ||| || ||| | ||||| ||
Sbjct 817 AAATTTGCGCATGTAATTAGTCGCGTTGTCTCCATTCGCATCGAC-TGTGA-TTTTCGTA 874
Query 896 CTGAAGATTCTCAACCTGCGTCA-CTGAATCCTCAACCTTCCGCACCGTATGCTATATCC 954
|||||||||||||||||||||| | | ||||||||||||||||||| | |||| |||||
Sbjct 875 ATGAAGATTCTCAACCTGCGTCATC-GCATCCTCAACCTTCCGCACCATCTGCTGTATCC 933
Query 955 CCGACGACACCGCATACTCAGCCTC 979
|||| | |||||||||||| ||||
Sbjct 934 CCGA--A-ACCGCATACTCAACCTC 955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41439610779
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5