BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32400.1
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491487 jgi|Araly1|491487|fgenesh2_kg.7__920__AT4G32400.1 2139 0.0
Ahg932706 jgi|Araly1|932706|scaffold_400694.1 926 0.0
> Ahg491487 jgi|Araly1|491487|fgenesh2_kg.7__920__AT4G32400.1
Length=1401
Score = 2139 bits (1158), Expect = 0.0
Identities = 1328/1410 (94%), Gaps = 12/1410 (1%)
Strand=Plus/Plus
Query 57 TGGTCATGGGGAAAACCGGAATCCAATTGTTCGACGATTCGAGGAATGGGTTTTTCTCCG 116
||| |||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 2 TGGGCATGGGGAGAACCGGAATCCAGTTGTTCGACGATTCGAGGAATGGATTTTTCTCCG 61
Query 117 TTTCCGATTTAGGATTCGATTCGAGCCTAAACAGCTCTAATTACCACCCAATTGGTGGGT 176
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 62 TTTCCGATTTAGGATTCGATTCGAGTCTAAACAGCTCTACTTACCACCCAATTGGTGGGT 121
Query 177 TATTCGCCAGCGTTAATCAGACTAATCCATTCGCATCCCTCTCGTCCT-CGGATCTTTCC 235
||||||||||||||||||| |||| |||||||||||||||||||| || |||||| ||||
Sbjct 122 TATTCGCCAGCGTTAATCAAACTAGTCCATTCGCATCCCTCTCGT-CTCCGGATCCTTCC 180
Query 236 AACAGAGGCAACAACAGCTTCTCTACCCAGCTCAATGATCTCTACACCAAGTATATGCCG 295
||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||
Sbjct 181 CACAGAGGCAACAACAGCTTGTCTGCCCAGCTCAATGATCTCTACACTAAGTATATGCCG 240
Query 296 ggaaaagaggaggaggaagaagtagttaatggcgagaagaggaagaggaagaagaaaggT 355
|||||||||||||||||||||| ||||||||||||||||||| | | |||||||||||||
Sbjct 241 GGAAAAGAGGAGGAGGAAGAAGAAGTTAATGGCGAGAAGAGG-A-A-GAAGAAGAAAGGT 297
Query 356 GGGCTCACACTGAAGATTAAGATCGCTAATCCTTCGTTGCGGCGGCTATTAAGCGGAGCA 415
||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 298 GGGCTCAAACTGAAGATAAAGATCGCTAATCCTTCATTGCGGCGGCTATTAAGTGGAGCT 357
Query 416 GTAGCTGGAGCGGTGTCGAGAACGGTGGTTGCGCCGTTGGAGACAATCAGGACGCATCTA 475
||||||||||| ||||| ||||||| |||||| |||||||||||||| ||||||||||||
Sbjct 358 GTAGCTGGAGCAGTGTCAAGAACGGCGGTTGCTCCGTTGGAGACAATTAGGACGCATCTA 417
Query 476 ATGGTGGGAAGTGGAGGAAACTCCAGCACTGAAGTGTTCAGTGATATCATGAAGCATGAA 535
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 418 ATGGTGGGAAGTGGAGGAAACTCCAGCACTCAAGTGTTCGGTGATATCATGAAGCATGAA 477
Query 536 GGTTGGACTGGTCTCTTCAGGGGCAATTTGGTCAATGTCATTCGTGTTGCACCTGCTCGA 595
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 478 GGTTGGACTGGTCTCTTCAGGGGTAATTTGGTCAATGTCATTCGTGTTGCACCCGCTCGA 537
Query 596 GCCGTCGAGCTTTTTGTATTCGAGACCGTAAACAAGAAATTGTCGCCGCCACATGGACAA 655
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
Sbjct 538 GCCGTCGAGCTTTTTGTATTCGAGACCGTAAACAAGAAATTGTCACCGCAACATGGAGAG 597
Query 656 GAATCGAAAATCCCAATTCCAGCTTCTTTACTGGCTGGTGCCTGTGCTGGAGTTAGCCAG 715
||||||||||||||||| || ||||| ||||| || ||||| ||||||||||||||||||
Sbjct 598 GAATCGAAAATCCCAATCCCGGCTTCATTACTCGCCGGTGCTTGTGCTGGAGTTAGCCAG 657
Query 716 ACACTCTTGACATACCCTCTTGAACTAGTCAAGACTCGCCTTACAATTCAGAGAGGTGTT 775
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ACCCTCTTGACATACCCTCTTGAACTAGTCAAGACTCGCCTTACAATTCAGAGAGGTGTT 717
Query 776 TACAAAGGGATTTTTGATGCGTTTCTCAAAATCATACGCGAGGAAGGACCCACAGAACTC 835
|||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 718 TACAAAGGGATTTTAGATGCGTTTCTCAAAATTATTCGCGAGGAAGGACCCACAGAACTC 777
Query 836 TACAGGGGTCTTGCTCCTAGCCTTATTGGAGTTGTTCCATACGCAGCTACAAATTACTTT 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TACAGGGGTCTTGCTCCTAGCCTTATTGGAGTTGTTCCATACGCAGCTACAAATTACTTT 837
Query 896 GCATATGATTCTTTGAGAAAAGCATACCGGAGTTTTTCAAAGCAGGAGAAGATTGGAAAC 955
||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 838 GCATATGATTCCTTAAGAAAAGCATACCGGAGTTTTTCAAAGAAGGAGAAGATTGGAAAC 897
Query 956 ATTGAGACTCTTTTGATAGGTTCTTTAGCAGGTGCACTATCGAGCACTGCAACTTTCCCT 1015
||||||||||||||||| ||||||||||| ||||||||||| ||||| || |||||||||
Sbjct 898 ATTGAGACTCTTTTGATCGGTTCTTTAGCGGGTGCACTATCAAGCACCGCGACTTTCCCT 957
Query 1016 CTTGAAGTGGCCCGGAAGCATATGCAGGTGGGAGCTGTTAGCGGGAGGGTTGTGTACAAG 1075
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 958 CTTGAAGTGGCCCGGAAGCATATGCAAGTGGGAGCGGTTAGCGGGAGAGTTGTGTACAAG 1017
Query 1076 AACATGTTGCACGCTCTGGTGACCATACTTGAGCATGAAGGTATTCTCGGTTGGTACAAA 1135
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1018 AACATGTTGCATGCTCTGGTGACCATACTTGAGCATGAGGGTATTCTCGGTTGGTACAAA 1077
Query 1136 GGGCTTGGACCGAGTTGCTTGAAGTTGGTTCCTGCTGCTGGAATCTCCTTCATGTGTTAT 1195
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1078 GGGCTTGGACCAAGTTGCTTGAAGTTGGTTCCGGCTGCTGGAATCTCCTTCATGTGTTAT 1137
Query 1196 GAAGCTTGCAAGAAGATACTCATCGAGAACAACCAAGAAGCTTGATTTTGGAATTGTATG 1255
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1138 GAGGCTTGCAAGAAGATACTCATCGAGAACAACCAAGAAGCCTGATTTTGGAATTGTATG 1197
Query 1256 GATTCGTGGCAAATTTTAAG-GATTGATCAGAGAAACACATTGTGGATACTAATTGGGTT 1314
|| || |||||| ||||||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 1198 GACTCATGGCAA-TTTTAAGCG-TTGATCAGAGAAACTCATTGTGGATACTAATTGGGTT 1255
Query 1315 CATTTTACACCACTTGAGATTTCACAAATTAGTATTGAGGGGGGATTAAAAGATTCACTC 1374
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||
Sbjct 1256 CATTTTACACCACTTGAGATTTCACAAATTAGTGTTGAGGGG--ATTAAAAGATTCATTC 1313
Query 1375 TACCTTTTTGTTTGAACTTTACGTTTTCAATTTTTGATTGATCTGATTCTGATTCAAATA 1434
||||||||| ||||||||||| ||| | ||| ||||||||||||||||||||||||||
Sbjct 1314 TACCTTTTTTTTTGAACTTTATGTTGG-A-TTTCTGATTGATCTGATTCTGATTCAAATA 1371
Query 1435 AGAGTTTACACAATATCTCTTCAAATATGT 1464
||| ||||||||||||||||||||||||||
Sbjct 1372 AGACTTTACACAATATCTCTTCAAATATGT 1401
> Ahg932706 jgi|Araly1|932706|scaffold_400694.1
Length=1251
Score = 926 bits (501), Expect = 0.0
Identities = 979/1206 (81%), Gaps = 47/1206 (4%)
Strand=Plus/Plus
Query 60 TCATGGGGAAAACCGGAATCCAATTGTTCGACGATTCGAGGAATGGGTTTTTCTCCGTTT 119
||||||| || || ||||||||||||||||| ||| | |||||||| |||||||| || |
Sbjct 21 TCATGGGCAAGACTGGAATCCAATTGTTCGATGATACAAGGAATGGTTTTTTCTCTGTAT 80
Query 120 CCGATTTAGGATTCGATT--CG-AGCCTAAACAGCTCTAATTACCACCCAATTGGTGGGT 176
||||||| |||| ||||| | |||||| | | | | || |||| ||| ||||||| |
Sbjct 81 CCGATTTGGGATCCGATTGGAGCAGCCTACAGAACCCAAACTACCGGCCAGTTGGTGGAT 140
Query 177 TATTCGCCAGCGTTAATC----A-G-ACT--AATC----C---A--T---T-CGCATCCC 215
| || || || ||||||| | | ||| | || | | | | || |||
Sbjct 141 TGTTTGCGAGTGTTAATCAATTAGGAACTGGATTCGGGTCAGGACTTGGGTCCGGATCTA 200
Query 216 TCTCGTCCT-CGGATCTTTCCAACAGAGGCAACAAC---AGCTTCTCTACCCAGCTCAAT 271
| |||| || |||||| | ||||||||| |||||| |||||| || | ||||| |||
Sbjct 201 TTTCGT-CTCCGGATCCTCCCAACAGAGATAACAACAGTAGCTTCACTGCTCAGCTTAAT 259
Query 272 GATCTCTACACCAAGTATATGCCGggaaaagaggaggaggaagaagtagttaatggcgag 331
||||||| ||| |||||| | || ||||| |||||||| |||| ||| | ||| |||
Sbjct 260 GATCTCTGCACAAAGTATTTACCTTTTAAAGATGAGGAGGAGGAAGAAGTGATTGGTGAG 319
Query 332 aaga-ggaagaggaagaagaaaggTGGGCTCACACTGAAGATTAAGATCGCTAATCCTTC 390
|| | |||||| ||||||||| || ||| | | ||||||| ||||||| ||||||||||
Sbjct 320 AA-ACGGAAGAAGAAGAAGAATGGAGGGTTGAAACTGAAGCTTAAGATTTCTAATCCTTC 378
Query 391 GTTGCGGCGGCTATTAAGCGGAGCAGTAGCTGGAGCGGTGTCGAGAACGGTGGTTGCGCC 450
|||| ||||| ||||||| ||||| || ||||||||| | |||||||||| ||| || ||
Sbjct 379 GTTGAGGCGGTTATTAAGTGGAGCTGTGGCTGGAGCGATTTCGAGAACGGCGGTGGCTCC 438
Query 451 GTTGGAGACAATCAGGACGCATCTAATGGTGGGAAGTGGAGGAAACTCCAGCACTGAAGT 510
||||| || || ||||| ||| |||||||||||||||| || |||||| |||||||||
Sbjct 439 TTTGGAAACTATTAGGACTCATTTAATGGTGGGAAGTGGTGGCGACTCCACCACTGAAGT 498
Query 511 -GTTCAGTGATATCATGAAGCATGAAGGTTGGACTGGTCTCTTCAGGGGCAATTTGGTCA 569
||| |||||||||||||||| ||||| |||| |||||||||||||||||||||||||
Sbjct 499 CTTTC-GTGATATCATGAAGCAAGAAGGATGGAAAGGTCTCTTCAGGGGCAATTTGGTCA 557
Query 570 ATGTCATTCGTGTTGCACCTGCTCGAGCCGTCGAGCTTTTTGTATTCGAGACCGTAAACA 629
|||| |||||||| ||||| ||||| ||||| |||||||||||||||||||| || ||||
Sbjct 558 ATGTGATTCGTGTAGCACCCGCTCGTGCCGTTGAGCTTTTTGTATTCGAGACAGTTAACA 617
Query 630 AGAAATTGTCGCCGCCA-CATGGACAAGAATCGAAAATCCCAATTCCAGCTTCTTTACTG 688
|||| ||| | || | | ||| || | || |||||||| ||||||||||| || ||
Sbjct 618 AGAACTTGACTCCAA-AGCTTGGTGAACAGTCAAAAATCCCCATTCCAGCTTCATTGCTT 676
Query 689 GCTGGTGCCTGTGCTGGAGTTAGCCAGACACTCTTGACATACCCTCTTGAACTAGTCAAG 748
|| |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 677 GCGGGTGCCTGTGCTGGGGTTAGCCAGACCCTCTTGACATACCCCCTTGAACTAGTCAAG 736
Query 749 ACTCGCCTTACAATTCAGAGAGGTGTTTACAAAGGGATTTTTG-ATGCGTTTCTCAAAAT 807
|| ||||||||||||||||||||||| ||||| |||| | || |||| ||| |||||||
Sbjct 737 ACCCGCCTTACAATTCAGAGAGGTGTATACAA-GGGAATAGTGGATGCTTTTGTCAAAAT 795
Query 808 CATACGCGAGGAAGGACCCACAGAACTCTACAGGGGTCTTGCTCCTAGCCTTATTGGAGT 867
||| | ||||||||||| || ||||| ||||||||||| || || |||||||| |||||
Sbjct 796 AATAAGGGAGGAAGGACCGACTGAACTTTACAGGGGTCTGGCCCCGAGCCTTATAGGAGT 855
Query 868 TGTTCCATACGCAGCTACAAATTACTTTGCATATGATTCTTTGAGAAAAGCATACCGGA- 926
|||||||| ||||| ||||| ||||| || ||||| || || |||||||| ||||| |
Sbjct 856 GGTTCCATATGCAGCAACAAACTACTTCGCCTATGACTCCTTAAGAAAAGCTTACCGTAA 915
Query 927 GTTTTTCAAAGCAGGAGAAG-ATTGGAAACATTGAGACTCTTTTGATAGGTTCTTTAGCA 985
| | | || ||| |||| | ||||| || || ||||||||||||||||||||||||||
Sbjct 916 GCTGGTGAA-GCAAGAGA-GCATTGGGAATATCGAGACTCTTTTGATAGGTTCTTTAGCT 973
Query 986 GGTGCACTATCGAGCACTGCAACTTTCCCTCTTGAAG-TGGCCCGGAAGCATATGCAGGT 1044
||||| |||| || |||||||||||||| |||| || | || |||||||||||||||||
Sbjct 974 GGTGCGTTATCAAGTACTGCAACTTTCCC-CTTGGAGGTTGCTCGGAAGCATATGCAGGT 1032
Query 1045 GGGAGCTGTTAGCGGGAGGGTTGTGTACAAGAACATGTTGCACGCTCTGGTGAC-CATAC 1103
|||||| || | |||||||| || |||||||| |||||||| ||| || | | |||||
Sbjct 1033 GGGAGCAGTCGGTGGGAGGGTGGTTTACAAGAATATGTTGCATGCTTTGATC-CGCATAC 1091
Query 1104 TTGAGCATGAAGGTATT-CTCGGTTGGTACAAAGGGCTTGGACCGAGTTGCTTGAAGTTG 1162
| ||||| |||||| || | |||||||| | ||||||||||||||||||| ||||||||
Sbjct 1092 TCGAGCAAGAAGGTGTTGCA-GGTTGGTATAGAGGGCTTGGACCGAGTTGCCTGAAGTTG 1150
Query 1163 GTTCCTGCTGCTGGAATCTCCTTCATGTGTTATGAAGCTTGCAAGAAGATACTCATCGAG 1222
|||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| | |||
Sbjct 1151 GTTCCTGCAGCTGGAATCTCCTTCATGTGTTACGAAGCGTGCAAGAAGATACTCGTTGAG 1210
Query 1223 AACAAC 1228
||||||
Sbjct 1211 AACAAC 1216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54888043045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5