BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32400.1 Length=1467 Score E Sequences producing significant alignments: (Bits) Value Ahg491487 jgi|Araly1|491487|fgenesh2_kg.7__920__AT4G32400.1 2139 0.0 Ahg932706 jgi|Araly1|932706|scaffold_400694.1 926 0.0 > Ahg491487 jgi|Araly1|491487|fgenesh2_kg.7__920__AT4G32400.1 Length=1401 Score = 2139 bits (1158), Expect = 0.0 Identities = 1328/1410 (94%), Gaps = 12/1410 (1%) Strand=Plus/Plus Query 57 TGGTCATGGGGAAAACCGGAATCCAATTGTTCGACGATTCGAGGAATGGGTTTTTCTCCG 116 ||| |||||||| |||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 2 TGGGCATGGGGAGAACCGGAATCCAGTTGTTCGACGATTCGAGGAATGGATTTTTCTCCG 61 Query 117 TTTCCGATTTAGGATTCGATTCGAGCCTAAACAGCTCTAATTACCACCCAATTGGTGGGT 176 ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 62 TTTCCGATTTAGGATTCGATTCGAGTCTAAACAGCTCTACTTACCACCCAATTGGTGGGT 121 Query 177 TATTCGCCAGCGTTAATCAGACTAATCCATTCGCATCCCTCTCGTCCT-CGGATCTTTCC 235 ||||||||||||||||||| |||| |||||||||||||||||||| || |||||| |||| Sbjct 122 TATTCGCCAGCGTTAATCAAACTAGTCCATTCGCATCCCTCTCGT-CTCCGGATCCTTCC 180 Query 236 AACAGAGGCAACAACAGCTTCTCTACCCAGCTCAATGATCTCTACACCAAGTATATGCCG 295 ||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||| Sbjct 181 CACAGAGGCAACAACAGCTTGTCTGCCCAGCTCAATGATCTCTACACTAAGTATATGCCG 240 Query 296 ggaaaagaggaggaggaagaagtagttaatggcgagaagaggaagaggaagaagaaaggT 355 |||||||||||||||||||||| ||||||||||||||||||| | | ||||||||||||| Sbjct 241 GGAAAAGAGGAGGAGGAAGAAGAAGTTAATGGCGAGAAGAGG-A-A-GAAGAAGAAAGGT 297 Query 356 GGGCTCACACTGAAGATTAAGATCGCTAATCCTTCGTTGCGGCGGCTATTAAGCGGAGCA 415 ||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| ||||| Sbjct 298 GGGCTCAAACTGAAGATAAAGATCGCTAATCCTTCATTGCGGCGGCTATTAAGTGGAGCT 357 Query 416 GTAGCTGGAGCGGTGTCGAGAACGGTGGTTGCGCCGTTGGAGACAATCAGGACGCATCTA 475 ||||||||||| ||||| ||||||| |||||| |||||||||||||| |||||||||||| Sbjct 358 GTAGCTGGAGCAGTGTCAAGAACGGCGGTTGCTCCGTTGGAGACAATTAGGACGCATCTA 417 Query 476 ATGGTGGGAAGTGGAGGAAACTCCAGCACTGAAGTGTTCAGTGATATCATGAAGCATGAA 535 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 418 ATGGTGGGAAGTGGAGGAAACTCCAGCACTCAAGTGTTCGGTGATATCATGAAGCATGAA 477 Query 536 GGTTGGACTGGTCTCTTCAGGGGCAATTTGGTCAATGTCATTCGTGTTGCACCTGCTCGA 595 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 478 GGTTGGACTGGTCTCTTCAGGGGTAATTTGGTCAATGTCATTCGTGTTGCACCCGCTCGA 537 Query 596 GCCGTCGAGCTTTTTGTATTCGAGACCGTAAACAAGAAATTGTCGCCGCCACATGGACAA 655 |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | Sbjct 538 GCCGTCGAGCTTTTTGTATTCGAGACCGTAAACAAGAAATTGTCACCGCAACATGGAGAG 597 Query 656 GAATCGAAAATCCCAATTCCAGCTTCTTTACTGGCTGGTGCCTGTGCTGGAGTTAGCCAG 715 ||||||||||||||||| || ||||| ||||| || ||||| |||||||||||||||||| Sbjct 598 GAATCGAAAATCCCAATCCCGGCTTCATTACTCGCCGGTGCTTGTGCTGGAGTTAGCCAG 657 Query 716 ACACTCTTGACATACCCTCTTGAACTAGTCAAGACTCGCCTTACAATTCAGAGAGGTGTT 775 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 ACCCTCTTGACATACCCTCTTGAACTAGTCAAGACTCGCCTTACAATTCAGAGAGGTGTT 717 Query 776 TACAAAGGGATTTTTGATGCGTTTCTCAAAATCATACGCGAGGAAGGACCCACAGAACTC 835 |||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| Sbjct 718 TACAAAGGGATTTTAGATGCGTTTCTCAAAATTATTCGCGAGGAAGGACCCACAGAACTC 777 Query 836 TACAGGGGTCTTGCTCCTAGCCTTATTGGAGTTGTTCCATACGCAGCTACAAATTACTTT 895 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 TACAGGGGTCTTGCTCCTAGCCTTATTGGAGTTGTTCCATACGCAGCTACAAATTACTTT 837 Query 896 GCATATGATTCTTTGAGAAAAGCATACCGGAGTTTTTCAAAGCAGGAGAAGATTGGAAAC 955 ||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 838 GCATATGATTCCTTAAGAAAAGCATACCGGAGTTTTTCAAAGAAGGAGAAGATTGGAAAC 897 Query 956 ATTGAGACTCTTTTGATAGGTTCTTTAGCAGGTGCACTATCGAGCACTGCAACTTTCCCT 1015 ||||||||||||||||| ||||||||||| ||||||||||| ||||| || ||||||||| Sbjct 898 ATTGAGACTCTTTTGATCGGTTCTTTAGCGGGTGCACTATCAAGCACCGCGACTTTCCCT 957 Query 1016 CTTGAAGTGGCCCGGAAGCATATGCAGGTGGGAGCTGTTAGCGGGAGGGTTGTGTACAAG 1075 |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct 958 CTTGAAGTGGCCCGGAAGCATATGCAAGTGGGAGCGGTTAGCGGGAGAGTTGTGTACAAG 1017 Query 1076 AACATGTTGCACGCTCTGGTGACCATACTTGAGCATGAAGGTATTCTCGGTTGGTACAAA 1135 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1018 AACATGTTGCATGCTCTGGTGACCATACTTGAGCATGAGGGTATTCTCGGTTGGTACAAA 1077 Query 1136 GGGCTTGGACCGAGTTGCTTGAAGTTGGTTCCTGCTGCTGGAATCTCCTTCATGTGTTAT 1195 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1078 GGGCTTGGACCAAGTTGCTTGAAGTTGGTTCCGGCTGCTGGAATCTCCTTCATGTGTTAT 1137 Query 1196 GAAGCTTGCAAGAAGATACTCATCGAGAACAACCAAGAAGCTTGATTTTGGAATTGTATG 1255 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1138 GAGGCTTGCAAGAAGATACTCATCGAGAACAACCAAGAAGCCTGATTTTGGAATTGTATG 1197 Query 1256 GATTCGTGGCAAATTTTAAG-GATTGATCAGAGAAACACATTGTGGATACTAATTGGGTT 1314 || || |||||| ||||||| | |||||||||||||| |||||||||||||||||||||| Sbjct 1198 GACTCATGGCAA-TTTTAAGCG-TTGATCAGAGAAACTCATTGTGGATACTAATTGGGTT 1255 Query 1315 CATTTTACACCACTTGAGATTTCACAAATTAGTATTGAGGGGGGATTAAAAGATTCACTC 1374 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| || Sbjct 1256 CATTTTACACCACTTGAGATTTCACAAATTAGTGTTGAGGGG--ATTAAAAGATTCATTC 1313 Query 1375 TACCTTTTTGTTTGAACTTTACGTTTTCAATTTTTGATTGATCTGATTCTGATTCAAATA 1434 ||||||||| ||||||||||| ||| | ||| |||||||||||||||||||||||||| Sbjct 1314 TACCTTTTTTTTTGAACTTTATGTTGG-A-TTTCTGATTGATCTGATTCTGATTCAAATA 1371 Query 1435 AGAGTTTACACAATATCTCTTCAAATATGT 1464 ||| |||||||||||||||||||||||||| Sbjct 1372 AGACTTTACACAATATCTCTTCAAATATGT 1401 > Ahg932706 jgi|Araly1|932706|scaffold_400694.1 Length=1251 Score = 926 bits (501), Expect = 0.0 Identities = 979/1206 (81%), Gaps = 47/1206 (4%) Strand=Plus/Plus Query 60 TCATGGGGAAAACCGGAATCCAATTGTTCGACGATTCGAGGAATGGGTTTTTCTCCGTTT 119 ||||||| || || ||||||||||||||||| ||| | |||||||| |||||||| || | Sbjct 21 TCATGGGCAAGACTGGAATCCAATTGTTCGATGATACAAGGAATGGTTTTTTCTCTGTAT 80 Query 120 CCGATTTAGGATTCGATT--CG-AGCCTAAACAGCTCTAATTACCACCCAATTGGTGGGT 176 ||||||| |||| ||||| | |||||| | | | | || |||| ||| ||||||| | Sbjct 81 CCGATTTGGGATCCGATTGGAGCAGCCTACAGAACCCAAACTACCGGCCAGTTGGTGGAT 140 Query 177 TATTCGCCAGCGTTAATC----A-G-ACT--AATC----C---A--T---T-CGCATCCC 215 | || || || ||||||| | | ||| | || | | | | || ||| Sbjct 141 TGTTTGCGAGTGTTAATCAATTAGGAACTGGATTCGGGTCAGGACTTGGGTCCGGATCTA 200 Query 216 TCTCGTCCT-CGGATCTTTCCAACAGAGGCAACAAC---AGCTTCTCTACCCAGCTCAAT 271 | |||| || |||||| | ||||||||| |||||| |||||| || | ||||| ||| Sbjct 201 TTTCGT-CTCCGGATCCTCCCAACAGAGATAACAACAGTAGCTTCACTGCTCAGCTTAAT 259 Query 272 GATCTCTACACCAAGTATATGCCGggaaaagaggaggaggaagaagtagttaatggcgag 331 ||||||| ||| |||||| | || ||||| |||||||| |||| ||| | ||| ||| Sbjct 260 GATCTCTGCACAAAGTATTTACCTTTTAAAGATGAGGAGGAGGAAGAAGTGATTGGTGAG 319 Query 332 aaga-ggaagaggaagaagaaaggTGGGCTCACACTGAAGATTAAGATCGCTAATCCTTC 390 || | |||||| ||||||||| || ||| | | ||||||| ||||||| |||||||||| Sbjct 320 AA-ACGGAAGAAGAAGAAGAATGGAGGGTTGAAACTGAAGCTTAAGATTTCTAATCCTTC 378 Query 391 GTTGCGGCGGCTATTAAGCGGAGCAGTAGCTGGAGCGGTGTCGAGAACGGTGGTTGCGCC 450 |||| ||||| ||||||| ||||| || ||||||||| | |||||||||| ||| || || Sbjct 379 GTTGAGGCGGTTATTAAGTGGAGCTGTGGCTGGAGCGATTTCGAGAACGGCGGTGGCTCC 438 Query 451 GTTGGAGACAATCAGGACGCATCTAATGGTGGGAAGTGGAGGAAACTCCAGCACTGAAGT 510 ||||| || || ||||| ||| |||||||||||||||| || |||||| ||||||||| Sbjct 439 TTTGGAAACTATTAGGACTCATTTAATGGTGGGAAGTGGTGGCGACTCCACCACTGAAGT 498 Query 511 -GTTCAGTGATATCATGAAGCATGAAGGTTGGACTGGTCTCTTCAGGGGCAATTTGGTCA 569 ||| |||||||||||||||| ||||| |||| ||||||||||||||||||||||||| Sbjct 499 CTTTC-GTGATATCATGAAGCAAGAAGGATGGAAAGGTCTCTTCAGGGGCAATTTGGTCA 557 Query 570 ATGTCATTCGTGTTGCACCTGCTCGAGCCGTCGAGCTTTTTGTATTCGAGACCGTAAACA 629 |||| |||||||| ||||| ||||| ||||| |||||||||||||||||||| || |||| Sbjct 558 ATGTGATTCGTGTAGCACCCGCTCGTGCCGTTGAGCTTTTTGTATTCGAGACAGTTAACA 617 Query 630 AGAAATTGTCGCCGCCA-CATGGACAAGAATCGAAAATCCCAATTCCAGCTTCTTTACTG 688 |||| ||| | || | | ||| || | || |||||||| ||||||||||| || || Sbjct 618 AGAACTTGACTCCAA-AGCTTGGTGAACAGTCAAAAATCCCCATTCCAGCTTCATTGCTT 676 Query 689 GCTGGTGCCTGTGCTGGAGTTAGCCAGACACTCTTGACATACCCTCTTGAACTAGTCAAG 748 || |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| Sbjct 677 GCGGGTGCCTGTGCTGGGGTTAGCCAGACCCTCTTGACATACCCCCTTGAACTAGTCAAG 736 Query 749 ACTCGCCTTACAATTCAGAGAGGTGTTTACAAAGGGATTTTTG-ATGCGTTTCTCAAAAT 807 || ||||||||||||||||||||||| ||||| |||| | || |||| ||| ||||||| Sbjct 737 ACCCGCCTTACAATTCAGAGAGGTGTATACAA-GGGAATAGTGGATGCTTTTGTCAAAAT 795 Query 808 CATACGCGAGGAAGGACCCACAGAACTCTACAGGGGTCTTGCTCCTAGCCTTATTGGAGT 867 ||| | ||||||||||| || ||||| ||||||||||| || || |||||||| ||||| Sbjct 796 AATAAGGGAGGAAGGACCGACTGAACTTTACAGGGGTCTGGCCCCGAGCCTTATAGGAGT 855 Query 868 TGTTCCATACGCAGCTACAAATTACTTTGCATATGATTCTTTGAGAAAAGCATACCGGA- 926 |||||||| ||||| ||||| ||||| || ||||| || || |||||||| ||||| | Sbjct 856 GGTTCCATATGCAGCAACAAACTACTTCGCCTATGACTCCTTAAGAAAAGCTTACCGTAA 915 Query 927 GTTTTTCAAAGCAGGAGAAG-ATTGGAAACATTGAGACTCTTTTGATAGGTTCTTTAGCA 985 | | | || ||| |||| | ||||| || || |||||||||||||||||||||||||| Sbjct 916 GCTGGTGAA-GCAAGAGA-GCATTGGGAATATCGAGACTCTTTTGATAGGTTCTTTAGCT 973 Query 986 GGTGCACTATCGAGCACTGCAACTTTCCCTCTTGAAG-TGGCCCGGAAGCATATGCAGGT 1044 ||||| |||| || |||||||||||||| |||| || | || ||||||||||||||||| Sbjct 974 GGTGCGTTATCAAGTACTGCAACTTTCCC-CTTGGAGGTTGCTCGGAAGCATATGCAGGT 1032 Query 1045 GGGAGCTGTTAGCGGGAGGGTTGTGTACAAGAACATGTTGCACGCTCTGGTGAC-CATAC 1103 |||||| || | |||||||| || |||||||| |||||||| ||| || | | ||||| Sbjct 1033 GGGAGCAGTCGGTGGGAGGGTGGTTTACAAGAATATGTTGCATGCTTTGATC-CGCATAC 1091 Query 1104 TTGAGCATGAAGGTATT-CTCGGTTGGTACAAAGGGCTTGGACCGAGTTGCTTGAAGTTG 1162 | ||||| |||||| || | |||||||| | ||||||||||||||||||| |||||||| Sbjct 1092 TCGAGCAAGAAGGTGTTGCA-GGTTGGTATAGAGGGCTTGGACCGAGTTGCCTGAAGTTG 1150 Query 1163 GTTCCTGCTGCTGGAATCTCCTTCATGTGTTATGAAGCTTGCAAGAAGATACTCATCGAG 1222 |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| | ||| Sbjct 1151 GTTCCTGCAGCTGGAATCTCCTTCATGTGTTACGAAGCGTGCAAGAAGATACTCGTTGAG 1210 Query 1223 AACAAC 1228 |||||| Sbjct 1211 AACAAC 1216 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54888043045 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5