BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32420.1
Length=2810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491484 jgi|Araly1|491484|fgenesh2_kg.7__917__AT4G32420.1 3775 0.0
> Ahg491484 jgi|Araly1|491484|fgenesh2_kg.7__917__AT4G32420.1
Length=2832
Score = 3775 bits (2044), Expect = 0.0
Identities = 2611/2870 (91%), Gaps = 98/2870 (3%)
Strand=Plus/Plus
Query 1 AGTCGTTTTTATTCTGTGGCTCTGCGTGCGTATTCTCAGGTCATAATT-TCTGGAGATCC 59
|||| ||||||| |||||||||||||||||||||||||||| | |||| ||||| |
Sbjct 1 AGTCATTTTTATCCTGTGGCTCTGCGTGCGTATTCTCAGGTAAAAATTCTCTGG-TTTTT 59
Query 60 ACAGGTCATAATTTCTGA-AGC-T-----ATACCTAAAACATGGCAAAAAAGAAGAATCC 112
|||||||||| ||| || ||| | | ||| |||||||||||||||||||||||||
Sbjct 60 TCAGGTCATAACTTCGGATAGCTTGAGCCACACCAAAAACATGGCAAAAAAGAAGAATCC 119
Query 113 ACAGGTTTTTATGGATGTATCAATTGATGGAGATCCAGCTGAGACTATGGTTTTTGAGCT 172
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 120 ACAGGTTTTTATGGATGTATCCATTGATGGAGACCCAGCTGAGACTATGGTTTTTGAGCT 179
Query 173 TTTCCCTGAAGTCGCTCCCAAAACATCAGAGAATTTCCGTGCACTATGCACAGGGGAGAA 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTTCCCTGAAGTCGCTCCCAAAACATCAGAGAATTTCCGTGCACTATGCACAGGGGAGAA 239
Query 233 AGGCATCGGACCCAGAAGCGGAAAACCTTTGCATTATAAAGGATCCTTTTTCCATAGAAT 292
|||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 AGGCATTGGAACCAGAAGTGGAAAACCTTTGCATTACAAAGGATCCTTTTTCCATAGAAT 299
Query 293 AATGA-AAGGTTCCTCAGCACAGGCCGGTGACTTTGTGAATCGAAATGGTACTGCTGGGG 351
| | | ||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 300 ACT-ACAAGGTTCCTCAGCACAGGCTGGTGACTTTGTGAATCGAGATGGTACTGCTGGGG 358
Query 352 AAAGCATATATGCCGGAAAATTTCCAGATGAGTCACCGAAACTAAGACATGAGGAGACTG 411
||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| |||
Sbjct 359 AAAGCATATATGCCGGAAAATTTCCAGATGAGTCACCAAAACTAAGGCATGAAGAGCCTG 418
Query 412 GTCTTTTATCTATGTC-GATTGCAGACCGTGACAAGTTCGGATCACACTTTCATATTACC 470
|||||||||| ||||| | |||| ||||||||||||||||||||||||||||||||||||
Sbjct 419 GTCTTTTATCAATGTCTG-TTGCTGACCGTGACAAGTTCGGATCACACTTTCATATTACC 477
Query 471 TTCAGGCCAAATCAGCAGCTTGATAGAAATAATGTTGTTTTCGGAAAGCTAATTCAAGGG 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTCAGGCCAAATCAGCAGCTTGATAGAAATAATGTTGTTTTCGGAAAGCTAATTCAAGGG 537
Query 531 AAAGAGATATTGaaaaaaaTTGAACGTGTGGGTGATGAGGAAGGTAAACCTACTGTCAGC 590
|||||| || | |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 538 AAAGAGTTACTAAAAAAAATTGAACGTGTGGGTGATGAGGAAGGTAAACCTACTGTCATC 597
Query 591 GTGAAGATAATCCGTTGTGGAGAATATTCTGGAGATAAGAAGAAAAGTGACGGTaaaaaa 650
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 598 GTGAAGATAATCCGTTGTGGAGAATACTCTGGAGATAAGAAGAAAAGTGACGGTCGAAAA 657
Query 651 aaTGGAAAGCACAAGAAGTCTTTAAGAGTGAGAAGAAAAAAGAGGCGAAGACACTCTTCA 710
|||| |||||||||||||| | |||||| ||||||||| |||||||||||||||||||||
Sbjct 658 AATGCAAAGCACAAGAAGTGTATAAGAGAGAGAAGAAAGAAGAGGCGAAGACACTCTTCA 717
Query 711 TCTGAGTCTGAGAGCTCTTCAGATTCTGAGACAGATTCCTCAGAATCTGATAGTGAGTCA 770
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 718 TCTGAGTCTGAGAGCTCTTCAGATTCTGAGGCAGATTCCTCAGAATCTGATAGCGAGTCA 777
Query 771 GATTCAGACTTGTCTTCACCTTCCTTCCTTAGTTCCTCGAGCCATgaaaggcagaagaag 830
|||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 778 GATTCAGATTTGTCTTCACCTTCCGACCTTAGTTCCCCGAGCCATGAAAGGCAGAAGAAG 837
Query 831 agaaaaagaagttcaaagaaagaCAAGCACAGGCGGTCTAAACAGAGAGATAAGCGCCAT 890
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 838 AGAAAAAGAAGTTCAAAGAAAGACAAGCACAGGCGTTCTAAACGGAGAGATAAGCGCCAT 897
Query 891 GAGAAAAAGCGGAGTATGCGTGATAAGAGACCGAAACGCAAATCAAGAAGGTCCCCTGAC 950
|||||||||||||| |||| |||||||||| ||||||||||||||||||||||||| |||
Sbjct 898 GAGAAAAAGCGGAGGATGCATGATAAGAGATCGAAACGCAAATCAAGAAGGTCCCCAGAC 957
Query 951 AGTCTT---G---AAGACAGTAATAGTGGAAGTGAAGCAAGTCTTAGTGATGTCAATGTT 1004
|||||| | ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 958 AGTCTTACAGGTGAAGACAGTAATAGTGGAAGTGAAGCAAGTCTTAGTGATGCCAATGTT 1017
Query 1005 GAAATTGGAGCAAAAAAGAGGAAACACAGAGTCTCTCGTAGAACAGGTAATTCTGCACCA 1064
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1018 GAAATTGGAGCAAAAAAGAGGAAACCCAGAGTCTCTCGTAGAACAGGTAATTCTGCACCA 1077
Query 1065 GCGGTGGAAAAAGAAGCTGAATCACTTCACCAGGGCAAAAGGAAAGGACCAGATTTGCTT 1124
||||||||||||| ||||||| |||||||||||||||||||| | |||||||||||||||
Sbjct 1078 GCGGTGGAAAAAGGAGCTGAACCACTTCACCAGGGCAAAAGGGAGGGACCAGATTTGCTT 1137
Query 1125 GAAAACAGAGGGCTGAGAAGTAATGGAATTTCAGATGCTGCATCAGAACAGATTTCTGAT 1184
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1138 GAAAACAGAGGGCTGAGAAGTAATGGAATTTCAGATGCTGCGTCAGAACGGATTTCTGAT 1197
Query 1185 AGGCAACCTGATATTGTCGATGATCATCCTAGTAAATCTAGGAGCCGGAGCTTGAGTCCT 1244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AGGCAACCTGATATTGTTGATGATCATCCTAGTAAATCTAGGAGCCGGAGCTTGAGTCCT 1257
Query 1245 AAGAGGACAGTGAGTAAGAGCACGAGTGTTAGTCCTCGGAGGAGTCAGAGTAAGAGCCCG 1304
|||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||
Sbjct 1258 AAGAGGACAGTGAGTAAGAGTATGAGTGTTAGTCCCCGGAGGAGTCAGAGTAAGAGCCCG 1317
Query 1305 AGTTCAAGTCCTAGATGGAATGGGGGCAGAAGTCCTGCTAAAGGTAGCCGCCAAGTGAAG 1364
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AGTTCAAGTCCTAGACGGAATGGGGGCAGAAGTCCTGCTAAAGGTAGCCGCCAAGTGAAG 1377
Query 1365 AACTTGACAAACAGTAGAAGAGAAAGCCCAGGGAGTGAGGAAAAGGGCAGGCATGTCAGA 1424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1378 AACTTGACAAACAGTAGAAGAGAAAGCCCAGGGAGTGAGGAAAAGGGCAGGCATGTTAGA 1437
Query 1425 AGGAGCCCTACCAAAAGTGTTAGTAGAAGTCCGGTGCGGGTGAAAAAGGAAAGAGATATT 1484
|||||||| ||||||||||||||||||||||| |||||| |||||| |||||||||||||
Sbjct 1438 AGGAGCCCAACCAAAAGTGTTAGTAGAAGTCCAGTGCGGATGAAAAGGGAAAGAGATATT 1497
Query 1485 AGTAGAAGTCC-TT-C---AAAGAG-T-TTA--AG----C----A--GA----A-G---- 1516
||||||||||| || | |||||| | ||| || | | || | |
Sbjct 1498 AGTAGAAGTCCATTGCGGGAAAGAGATATTAGTAGAAGTCCTTCAAAGAGTTTAAGCAGA 1557
Query 1517 --TCCACTGAGGAGCCCCAAAAGGGTCATCAGCAGAAGTCCAGTGAGAGGTAGGATTGCC 1574
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 AGTCCATTGAGGAGCCCCAAAAGGGTCATCAGCAGAAGTCCAGTGAGAGGTAGGATTGCC 1617
Query 1575 AGAAGCCCTAGCCGGAGTCCTGTAAGATCTGCATCTCGTGGAAGCCTTGGGAGGGGCCCA 1634
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 AGAAGCCCTAGCAGGAGTCCTGTAAGATCTGCATCTCGTGGAAGCCTTGGGAGGGGCCCA 1677
Query 1635 CTAAGAAGATCGTCAAGAAGATCACCTAGCAGAAGTCCAGTTCGATCTTCTAGAAGAAGC 1694
||||||||||| |||||||| ||| ||||||||| ||||| |||||||||||||||||||
Sbjct 1678 CTAAGAAGATCATCAAGAAGGTCATCTAGCAGAACTCCAGCTCGATCTTCTAGAAGAAGC 1737
Query 1695 CTGAGCCGGAGTCCTATTCAATTATCTAGAAGAAGTCTGAGCCGGAGTCCCACTCGATTG 1754
|||||||||| ||| |||| || ||| |||||||| | |||||||||||| | ||||||
Sbjct 1738 CTGAGCCGGAATCCCATTCGATCATCAAGAAGAAGCCCGAGCCGGAGTCCTATTCGATTA 1797
Query 1755 TCTAGGAGAAGCCTAAGCCGGAGTCCCATTCGATCACCTAGGAAGA-GTGTGAGCAGGAG 1813
||||| |||||||| ||||| |||||||||| || | |||| |||| | | ||| ||||
Sbjct 1798 TCTAGAAGAAGCCTGAGCCGTAGTCCCATTCAATTATCTAG-AAGAAGCCTAAGCCGGAG 1856
Query 1814 TCC-AGTCCGATCATCTAGGAAGAGTG-T-GAGCAGAAGTCCGGTTCGTTCATCCAGGA- 1869
||| | || ||||| |||||| || | | |||||| ||||| || || ||||| ||||
Sbjct 1857 TCCCATTC-GATCACCTAGGA-GA-TCATTGAGCAGGAGTCCAGTCCGATCATCTAGGAA 1913
Query 1870 GACGTATCAGCAGGAGTCCAGTCCGATCATCTAGGAAGA-GTGTGAGCAGGAGTCCTATT 1928
|| || | ||||||||||| || || ||| | |||| || || | || |||||||| | |
Sbjct 1914 GA-GTGTGAGCAGGAGTCCGGTTCGTTCAGCCAGGA-GAAGTATCAGTAGGAGTCC-AGT 1970
Query 1929 C-GATTGTCCAG-AAGAAGTATCAGCAGGAGTCCTATTCGATTGTCCAGGAGAAGTATCA 1986
| ||| || || |||| || | |||||||||||||||||||||||||||||||||| ||
Sbjct 1971 CCGATCATCTAGGAAGA-GTGTGAGCAGGAGTCCTATTCGATTGTCCAGGAGAAGTAACA 2029
Query 1987 GCAGGAGTCCTGTTAGAGGAAGAAGAAGAATTAGCAGAAGTCCAGTTCCGGCAAGGAGAA 2046
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 2030 GCAGGAGTCCTGTTAGAGGAAGAAGAAGAATTAGCAAAAGTCCAGTTCCGGCGAGGAGAA 2089
Query 2047 GGAGTGTGCGGCCTAGATCTCCTCCTCCTGACCGCAGAAGAAGTTTGTCAAGAAGTGCTT 2106
|||||| |||||||||||||||||| ||| || |||||||||||||||||||||||||
Sbjct 2090 GGAGTGCACGGCCTAGATCTCCTCCTTGTGATCGTAGAAGAAGTTTGTCAAGAAGTGCTT 2149
Query 2107 CTCCTAATGGGCGCATAAGGAGAGGGAGAGGATTTAGCCAAAGATTCTCATACGCCCGTC 2166
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2150 CTCCTGATGGGCGCATAAGGAGAGGGAGAGGATTTAGCCAGAGATTCTCATACGCCCGTA 2209
Query 2167 GATACAGAACTAGTCCATCTCCTGATCGATCTCCTTATCGCTTTAGTGATAGGAGTGACC 2226
||||||||||||||| |||| || | ||||||||||||||||||||| ||||
Sbjct 2210 GATACAGAACTAGTC--------GATC--TC-C-TTATCGCTTTAGTGATAGGAGCGACC 2257
Query 2227 GTGACAGATTTAGAAGTCGCAGAAGGTTCTCGCCAAGTCGGTTCAGAAGCCCACTAAGAG 2286
||||||||||| |||||| |||||||||||||||||| ||||| ||||||||||||||||
Sbjct 2258 GTGACAGATTTCGAAGTCACAGAAGGTTCTCGCCAAGACGGTTTAGAAGCCCACTAAGAG 2317
Query 2287 GAAGAACACCTCCAAGGTATAGAAGAAGAAGCCGCTCAGTATCGCCTGGTCTCTGTTATC 2346
||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||
Sbjct 2318 GAAGAACACCTCCAAGGTATAGAAGAAGAAGCCGCTCTGTATCGCCTGGTCCCCGTTATC 2377
Query 2347 GCAACCGGCGGTACAGCCGCAGCC-C-----TATCCGTAGCCGATCTCCACCTTACAGAA 2400
| ||| |||||||||||||||||| | |||||||||||||||||||||||||| ||
Sbjct 2378 GTAACAGGCGGTACAGCCGCAGCCGCAGCCCTATCCGTAGCCGATCTCCACCTTACAAAA 2437
Query 2401 AGAGAAGGTCACCATCCGCTAGCCACAGCCTGAGTCCATCGAGGTCAAGATCAAGATCAA 2460
|||||||||||||||| |||||| |||||| |||||||||||| |||||||||| | |
Sbjct 2438 AGAGAAGGTCACCATCTGCTAGCTACAGCCCGAGTCCATCGAGATCAAGATCAA-A--A- 2493
Query 2461 AGTCATATTCAAAATCTCCCATTGGGACGGGGAAAGCAAGATCAGTGTCAAGATCACCAT 2520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2494 --TCATATTCAAAATCTCCCATTGGGACGGGGAAAGCAAGATCAGTGTCAAGATCACCAT 2551
Query 2521 CCAAGGCAAGGTCTCCATCGAAGTCGGATTCGACATCCTCGGATAATAGCCCAGGTGGGA 2580
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 2552 CCAAGGCAAGGTCTCCATCGAAGTCGGATTCGACATCCTCGGACAATAGCTCAGGTGGGA 2611
Query 2581 AAAAGGGATTAGTAGCCTATGATTAATGAATAATGATTACCCTTAAGTTAAGTGTTTGTT 2640
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 2612 AAAAGGGATTAGTAGCGTATGATTAATGAATAATGA---CCCTTAAGTTAAGTGTTTGTT 2668
Query 2641 CTTTTTACTGAGAAGAGATGGTAAAGAGAGTAAGTAGTTTACTTCTGTAAAACATAAGCA 2700
||||| ||||||||||||||||||| |||||||||||||||||| |||||||| || |||
Sbjct 2669 CTTTT-ACTGAGAAGAGATGGTAAAAAGAGTAAGTAGTTTACTTTTGTAAAACTTATGCA 2727
Query 2701 TTGTCTTTTGCGTATGTTTGTTTGATTATGCTCCAAGATTGTTAAAAATTTCTGTTGATG 2760
||||||| |||||||||||| | ||| ||||||| ||||||| || ||||||||||||
Sbjct 2728 TTGTCTTCTGCGTATGTTTGAT-GAT---GCTCCAACATTGTTATAACTTTCTGTTGATG 2783
Query 2761 TTTGCCGACATTTTTTCTTTGTTGCCATTTGCCGACAAATGTTAACTTCC 2810
|||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 2784 TTTGCCGACATTTTTT-TTTGTTTCCATTTGCCGACAAATGTTAACTTCC 2832
Score = 414 bits (224), Expect = 1e-114
Identities = 271/293 (92%), Gaps = 5/293 (2%)
Strand=Plus/Plus
Query 1671 CCAGTTCGATCTTCTAGAAGAAGCCTGAGCCGGAGTCCTATTCAATTATCTAGAAGAAGT 1730
||| ||||||| || |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1751 CCA-TTCGATCATCAAGAAGAAGCCCGAGCCGGAGTCCTATTCGATTATCTAGAAGAAGC 1809
Query 1731 CTGAGCCGGAGTCCCACTCGATTGTCTAGGAGAAGCCTAAGCCGGAGTCCCATTCGATCA 1790
|||||||| ||||||| || ||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1810 CTGAGCCGTAGTCCCATTCAATTATCTAGAAGAAGCCTAAGCCGGAGTCCCATTCGATCA 1869
Query 1791 CCTAGGAAGAGT--GTGAGCAGGAGTCCAGTCCGATCATCTAGGAAGAGTGTGAGCAGAA 1848
|||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1870 CCTAGG-AGA-TCATTGAGCAGGAGTCCAGTCCGATCATCTAGGAAGAGTGTGAGCAGGA 1927
Query 1849 GTCCGGTTCGTTCATCCAGGAGACGTATCAGCAGGAGTCCAGTCCGATCATCTAGGAAGA 1908
|||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1928 GTCCGGTTCGTTCAGCCAGGAGAAGTATCAGTAGGAGTCCAGTCCGATCATCTAGGAAGA 1987
Query 1909 GTGTGAGCAGGAGTCCTATTCGATTGTCCAGAAGAAGTATCAGCAGGAGTCCT 1961
||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1988 GTGTGAGCAGGAGTCCTATTCGATTGTCCAGGAGAAGTAACAGCAGGAGTCCT 2040
Score = 159 bits (86), Expect = 8e-38
Identities = 192/240 (80%), Gaps = 19/240 (8%)
Strand=Plus/Plus
Query 1659 CCT-AGCAGAAGT-CCAGTTCGATCT-TCTAGAAGAAGCCTGAGCCGGAGTCCTATTCAA 1715
||| ||| | ||| ||| ||| || | |||||||||||||| ||||||||||| |||| |
Sbjct 1809 CCTGAGCCGTAGTCCCA-TTCAAT-TATCTAGAAGAAGCCTAAGCCGGAGTCCCATTCGA 1866
Query 1716 TTATCTAGAAGAAGTC--TGAGCCGGAGTCCCACT-CGATTGTCTAGG-AGAAGCCTAAG 1771
| | |||| || | || ||||| ||||| ||| | |||| |||||| || || | ||
Sbjct 1867 TCACCTAGGAG-A-TCATTGAGCAGGAGT-CCAGTCCGATCATCTAGGAAG-AGTGTGAG 1922
Query 1772 CCGGAGTCCCATTCGATCA-CCTAGGAAG-AGTGTGAGCAGGAGTCCAGTCCGATCATCT 1829
| ||||||| |||| ||| || ||| || ||| | || |||||||||||||||||||||
Sbjct 1923 CAGGAGTCCGGTTCGTTCAGCC-AGG-AGAAGTATCAGTAGGAGTCCAGTCCGATCATCT 1980
Query 1830 AGGAAGAGTGTGAGCAGAAGTCCGGTTCG-TTCATCCAGGAGACGTATCAGCAGGAGTCC 1888
||||||||||||||||| ||||| |||| || ||||||||| ||| ||||||||||||
Sbjct 1981 AGGAAGAGTGTGAGCAGGAGTCCTATTCGATTG-TCCAGGAGAAGTAACAGCAGGAGTCC 2039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106043242080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5