BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32420.1 Length=2810 Score E Sequences producing significant alignments: (Bits) Value Ahg491484 jgi|Araly1|491484|fgenesh2_kg.7__917__AT4G32420.1 3775 0.0 > Ahg491484 jgi|Araly1|491484|fgenesh2_kg.7__917__AT4G32420.1 Length=2832 Score = 3775 bits (2044), Expect = 0.0 Identities = 2611/2870 (91%), Gaps = 98/2870 (3%) Strand=Plus/Plus Query 1 AGTCGTTTTTATTCTGTGGCTCTGCGTGCGTATTCTCAGGTCATAATT-TCTGGAGATCC 59 |||| ||||||| |||||||||||||||||||||||||||| | |||| ||||| | Sbjct 1 AGTCATTTTTATCCTGTGGCTCTGCGTGCGTATTCTCAGGTAAAAATTCTCTGG-TTTTT 59 Query 60 ACAGGTCATAATTTCTGA-AGC-T-----ATACCTAAAACATGGCAAAAAAGAAGAATCC 112 |||||||||| ||| || ||| | | ||| ||||||||||||||||||||||||| Sbjct 60 TCAGGTCATAACTTCGGATAGCTTGAGCCACACCAAAAACATGGCAAAAAAGAAGAATCC 119 Query 113 ACAGGTTTTTATGGATGTATCAATTGATGGAGATCCAGCTGAGACTATGGTTTTTGAGCT 172 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 120 ACAGGTTTTTATGGATGTATCCATTGATGGAGACCCAGCTGAGACTATGGTTTTTGAGCT 179 Query 173 TTTCCCTGAAGTCGCTCCCAAAACATCAGAGAATTTCCGTGCACTATGCACAGGGGAGAA 232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TTTCCCTGAAGTCGCTCCCAAAACATCAGAGAATTTCCGTGCACTATGCACAGGGGAGAA 239 Query 233 AGGCATCGGACCCAGAAGCGGAAAACCTTTGCATTATAAAGGATCCTTTTTCCATAGAAT 292 |||||| ||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 240 AGGCATTGGAACCAGAAGTGGAAAACCTTTGCATTACAAAGGATCCTTTTTCCATAGAAT 299 Query 293 AATGA-AAGGTTCCTCAGCACAGGCCGGTGACTTTGTGAATCGAAATGGTACTGCTGGGG 351 | | | ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 300 ACT-ACAAGGTTCCTCAGCACAGGCTGGTGACTTTGTGAATCGAGATGGTACTGCTGGGG 358 Query 352 AAAGCATATATGCCGGAAAATTTCCAGATGAGTCACCGAAACTAAGACATGAGGAGACTG 411 ||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| ||| Sbjct 359 AAAGCATATATGCCGGAAAATTTCCAGATGAGTCACCAAAACTAAGGCATGAAGAGCCTG 418 Query 412 GTCTTTTATCTATGTC-GATTGCAGACCGTGACAAGTTCGGATCACACTTTCATATTACC 470 |||||||||| ||||| | |||| |||||||||||||||||||||||||||||||||||| Sbjct 419 GTCTTTTATCAATGTCTG-TTGCTGACCGTGACAAGTTCGGATCACACTTTCATATTACC 477 Query 471 TTCAGGCCAAATCAGCAGCTTGATAGAAATAATGTTGTTTTCGGAAAGCTAATTCAAGGG 530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 TTCAGGCCAAATCAGCAGCTTGATAGAAATAATGTTGTTTTCGGAAAGCTAATTCAAGGG 537 Query 531 AAAGAGATATTGaaaaaaaTTGAACGTGTGGGTGATGAGGAAGGTAAACCTACTGTCAGC 590 |||||| || | |||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 538 AAAGAGTTACTAAAAAAAATTGAACGTGTGGGTGATGAGGAAGGTAAACCTACTGTCATC 597 Query 591 GTGAAGATAATCCGTTGTGGAGAATATTCTGGAGATAAGAAGAAAAGTGACGGTaaaaaa 650 |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct 598 GTGAAGATAATCCGTTGTGGAGAATACTCTGGAGATAAGAAGAAAAGTGACGGTCGAAAA 657 Query 651 aaTGGAAAGCACAAGAAGTCTTTAAGAGTGAGAAGAAAAAAGAGGCGAAGACACTCTTCA 710 |||| |||||||||||||| | |||||| ||||||||| ||||||||||||||||||||| Sbjct 658 AATGCAAAGCACAAGAAGTGTATAAGAGAGAGAAGAAAGAAGAGGCGAAGACACTCTTCA 717 Query 711 TCTGAGTCTGAGAGCTCTTCAGATTCTGAGACAGATTCCTCAGAATCTGATAGTGAGTCA 770 |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 718 TCTGAGTCTGAGAGCTCTTCAGATTCTGAGGCAGATTCCTCAGAATCTGATAGCGAGTCA 777 Query 771 GATTCAGACTTGTCTTCACCTTCCTTCCTTAGTTCCTCGAGCCATgaaaggcagaagaag 830 |||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 778 GATTCAGATTTGTCTTCACCTTCCGACCTTAGTTCCCCGAGCCATGAAAGGCAGAAGAAG 837 Query 831 agaaaaagaagttcaaagaaagaCAAGCACAGGCGGTCTAAACAGAGAGATAAGCGCCAT 890 ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 838 AGAAAAAGAAGTTCAAAGAAAGACAAGCACAGGCGTTCTAAACGGAGAGATAAGCGCCAT 897 Query 891 GAGAAAAAGCGGAGTATGCGTGATAAGAGACCGAAACGCAAATCAAGAAGGTCCCCTGAC 950 |||||||||||||| |||| |||||||||| ||||||||||||||||||||||||| ||| Sbjct 898 GAGAAAAAGCGGAGGATGCATGATAAGAGATCGAAACGCAAATCAAGAAGGTCCCCAGAC 957 Query 951 AGTCTT---G---AAGACAGTAATAGTGGAAGTGAAGCAAGTCTTAGTGATGTCAATGTT 1004 |||||| | ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 958 AGTCTTACAGGTGAAGACAGTAATAGTGGAAGTGAAGCAAGTCTTAGTGATGCCAATGTT 1017 Query 1005 GAAATTGGAGCAAAAAAGAGGAAACACAGAGTCTCTCGTAGAACAGGTAATTCTGCACCA 1064 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1018 GAAATTGGAGCAAAAAAGAGGAAACCCAGAGTCTCTCGTAGAACAGGTAATTCTGCACCA 1077 Query 1065 GCGGTGGAAAAAGAAGCTGAATCACTTCACCAGGGCAAAAGGAAAGGACCAGATTTGCTT 1124 ||||||||||||| ||||||| |||||||||||||||||||| | ||||||||||||||| Sbjct 1078 GCGGTGGAAAAAGGAGCTGAACCACTTCACCAGGGCAAAAGGGAGGGACCAGATTTGCTT 1137 Query 1125 GAAAACAGAGGGCTGAGAAGTAATGGAATTTCAGATGCTGCATCAGAACAGATTTCTGAT 1184 ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 1138 GAAAACAGAGGGCTGAGAAGTAATGGAATTTCAGATGCTGCGTCAGAACGGATTTCTGAT 1197 Query 1185 AGGCAACCTGATATTGTCGATGATCATCCTAGTAAATCTAGGAGCCGGAGCTTGAGTCCT 1244 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 AGGCAACCTGATATTGTTGATGATCATCCTAGTAAATCTAGGAGCCGGAGCTTGAGTCCT 1257 Query 1245 AAGAGGACAGTGAGTAAGAGCACGAGTGTTAGTCCTCGGAGGAGTCAGAGTAAGAGCCCG 1304 |||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||| Sbjct 1258 AAGAGGACAGTGAGTAAGAGTATGAGTGTTAGTCCCCGGAGGAGTCAGAGTAAGAGCCCG 1317 Query 1305 AGTTCAAGTCCTAGATGGAATGGGGGCAGAAGTCCTGCTAAAGGTAGCCGCCAAGTGAAG 1364 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1318 AGTTCAAGTCCTAGACGGAATGGGGGCAGAAGTCCTGCTAAAGGTAGCCGCCAAGTGAAG 1377 Query 1365 AACTTGACAAACAGTAGAAGAGAAAGCCCAGGGAGTGAGGAAAAGGGCAGGCATGTCAGA 1424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1378 AACTTGACAAACAGTAGAAGAGAAAGCCCAGGGAGTGAGGAAAAGGGCAGGCATGTTAGA 1437 Query 1425 AGGAGCCCTACCAAAAGTGTTAGTAGAAGTCCGGTGCGGGTGAAAAAGGAAAGAGATATT 1484 |||||||| ||||||||||||||||||||||| |||||| |||||| ||||||||||||| Sbjct 1438 AGGAGCCCAACCAAAAGTGTTAGTAGAAGTCCAGTGCGGATGAAAAGGGAAAGAGATATT 1497 Query 1485 AGTAGAAGTCC-TT-C---AAAGAG-T-TTA--AG----C----A--GA----A-G---- 1516 ||||||||||| || | |||||| | ||| || | | || | | Sbjct 1498 AGTAGAAGTCCATTGCGGGAAAGAGATATTAGTAGAAGTCCTTCAAAGAGTTTAAGCAGA 1557 Query 1517 --TCCACTGAGGAGCCCCAAAAGGGTCATCAGCAGAAGTCCAGTGAGAGGTAGGATTGCC 1574 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1558 AGTCCATTGAGGAGCCCCAAAAGGGTCATCAGCAGAAGTCCAGTGAGAGGTAGGATTGCC 1617 Query 1575 AGAAGCCCTAGCCGGAGTCCTGTAAGATCTGCATCTCGTGGAAGCCTTGGGAGGGGCCCA 1634 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1618 AGAAGCCCTAGCAGGAGTCCTGTAAGATCTGCATCTCGTGGAAGCCTTGGGAGGGGCCCA 1677 Query 1635 CTAAGAAGATCGTCAAGAAGATCACCTAGCAGAAGTCCAGTTCGATCTTCTAGAAGAAGC 1694 ||||||||||| |||||||| ||| ||||||||| ||||| ||||||||||||||||||| Sbjct 1678 CTAAGAAGATCATCAAGAAGGTCATCTAGCAGAACTCCAGCTCGATCTTCTAGAAGAAGC 1737 Query 1695 CTGAGCCGGAGTCCTATTCAATTATCTAGAAGAAGTCTGAGCCGGAGTCCCACTCGATTG 1754 |||||||||| ||| |||| || ||| |||||||| | |||||||||||| | |||||| Sbjct 1738 CTGAGCCGGAATCCCATTCGATCATCAAGAAGAAGCCCGAGCCGGAGTCCTATTCGATTA 1797 Query 1755 TCTAGGAGAAGCCTAAGCCGGAGTCCCATTCGATCACCTAGGAAGA-GTGTGAGCAGGAG 1813 ||||| |||||||| ||||| |||||||||| || | |||| |||| | | ||| |||| Sbjct 1798 TCTAGAAGAAGCCTGAGCCGTAGTCCCATTCAATTATCTAG-AAGAAGCCTAAGCCGGAG 1856 Query 1814 TCC-AGTCCGATCATCTAGGAAGAGTG-T-GAGCAGAAGTCCGGTTCGTTCATCCAGGA- 1869 ||| | || ||||| |||||| || | | |||||| ||||| || || ||||| |||| Sbjct 1857 TCCCATTC-GATCACCTAGGA-GA-TCATTGAGCAGGAGTCCAGTCCGATCATCTAGGAA 1913 Query 1870 GACGTATCAGCAGGAGTCCAGTCCGATCATCTAGGAAGA-GTGTGAGCAGGAGTCCTATT 1928 || || | ||||||||||| || || ||| | |||| || || | || |||||||| | | Sbjct 1914 GA-GTGTGAGCAGGAGTCCGGTTCGTTCAGCCAGGA-GAAGTATCAGTAGGAGTCC-AGT 1970 Query 1929 C-GATTGTCCAG-AAGAAGTATCAGCAGGAGTCCTATTCGATTGTCCAGGAGAAGTATCA 1986 | ||| || || |||| || | |||||||||||||||||||||||||||||||||| || Sbjct 1971 CCGATCATCTAGGAAGA-GTGTGAGCAGGAGTCCTATTCGATTGTCCAGGAGAAGTAACA 2029 Query 1987 GCAGGAGTCCTGTTAGAGGAAGAAGAAGAATTAGCAGAAGTCCAGTTCCGGCAAGGAGAA 2046 |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 2030 GCAGGAGTCCTGTTAGAGGAAGAAGAAGAATTAGCAAAAGTCCAGTTCCGGCGAGGAGAA 2089 Query 2047 GGAGTGTGCGGCCTAGATCTCCTCCTCCTGACCGCAGAAGAAGTTTGTCAAGAAGTGCTT 2106 |||||| |||||||||||||||||| ||| || ||||||||||||||||||||||||| Sbjct 2090 GGAGTGCACGGCCTAGATCTCCTCCTTGTGATCGTAGAAGAAGTTTGTCAAGAAGTGCTT 2149 Query 2107 CTCCTAATGGGCGCATAAGGAGAGGGAGAGGATTTAGCCAAAGATTCTCATACGCCCGTC 2166 ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2150 CTCCTGATGGGCGCATAAGGAGAGGGAGAGGATTTAGCCAGAGATTCTCATACGCCCGTA 2209 Query 2167 GATACAGAACTAGTCCATCTCCTGATCGATCTCCTTATCGCTTTAGTGATAGGAGTGACC 2226 ||||||||||||||| |||| || | ||||||||||||||||||||| |||| Sbjct 2210 GATACAGAACTAGTC--------GATC--TC-C-TTATCGCTTTAGTGATAGGAGCGACC 2257 Query 2227 GTGACAGATTTAGAAGTCGCAGAAGGTTCTCGCCAAGTCGGTTCAGAAGCCCACTAAGAG 2286 ||||||||||| |||||| |||||||||||||||||| ||||| |||||||||||||||| Sbjct 2258 GTGACAGATTTCGAAGTCACAGAAGGTTCTCGCCAAGACGGTTTAGAAGCCCACTAAGAG 2317 Query 2287 GAAGAACACCTCCAAGGTATAGAAGAAGAAGCCGCTCAGTATCGCCTGGTCTCTGTTATC 2346 ||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||| Sbjct 2318 GAAGAACACCTCCAAGGTATAGAAGAAGAAGCCGCTCTGTATCGCCTGGTCCCCGTTATC 2377 Query 2347 GCAACCGGCGGTACAGCCGCAGCC-C-----TATCCGTAGCCGATCTCCACCTTACAGAA 2400 | ||| |||||||||||||||||| | |||||||||||||||||||||||||| || Sbjct 2378 GTAACAGGCGGTACAGCCGCAGCCGCAGCCCTATCCGTAGCCGATCTCCACCTTACAAAA 2437 Query 2401 AGAGAAGGTCACCATCCGCTAGCCACAGCCTGAGTCCATCGAGGTCAAGATCAAGATCAA 2460 |||||||||||||||| |||||| |||||| |||||||||||| |||||||||| | | Sbjct 2438 AGAGAAGGTCACCATCTGCTAGCTACAGCCCGAGTCCATCGAGATCAAGATCAA-A--A- 2493 Query 2461 AGTCATATTCAAAATCTCCCATTGGGACGGGGAAAGCAAGATCAGTGTCAAGATCACCAT 2520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2494 --TCATATTCAAAATCTCCCATTGGGACGGGGAAAGCAAGATCAGTGTCAAGATCACCAT 2551 Query 2521 CCAAGGCAAGGTCTCCATCGAAGTCGGATTCGACATCCTCGGATAATAGCCCAGGTGGGA 2580 ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 2552 CCAAGGCAAGGTCTCCATCGAAGTCGGATTCGACATCCTCGGACAATAGCTCAGGTGGGA 2611 Query 2581 AAAAGGGATTAGTAGCCTATGATTAATGAATAATGATTACCCTTAAGTTAAGTGTTTGTT 2640 |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct 2612 AAAAGGGATTAGTAGCGTATGATTAATGAATAATGA---CCCTTAAGTTAAGTGTTTGTT 2668 Query 2641 CTTTTTACTGAGAAGAGATGGTAAAGAGAGTAAGTAGTTTACTTCTGTAAAACATAAGCA 2700 ||||| ||||||||||||||||||| |||||||||||||||||| |||||||| || ||| Sbjct 2669 CTTTT-ACTGAGAAGAGATGGTAAAAAGAGTAAGTAGTTTACTTTTGTAAAACTTATGCA 2727 Query 2701 TTGTCTTTTGCGTATGTTTGTTTGATTATGCTCCAAGATTGTTAAAAATTTCTGTTGATG 2760 ||||||| |||||||||||| | ||| ||||||| ||||||| || |||||||||||| Sbjct 2728 TTGTCTTCTGCGTATGTTTGAT-GAT---GCTCCAACATTGTTATAACTTTCTGTTGATG 2783 Query 2761 TTTGCCGACATTTTTTCTTTGTTGCCATTTGCCGACAAATGTTAACTTCC 2810 |||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 2784 TTTGCCGACATTTTTT-TTTGTTTCCATTTGCCGACAAATGTTAACTTCC 2832 Score = 414 bits (224), Expect = 1e-114 Identities = 271/293 (92%), Gaps = 5/293 (2%) Strand=Plus/Plus Query 1671 CCAGTTCGATCTTCTAGAAGAAGCCTGAGCCGGAGTCCTATTCAATTATCTAGAAGAAGT 1730 ||| ||||||| || |||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1751 CCA-TTCGATCATCAAGAAGAAGCCCGAGCCGGAGTCCTATTCGATTATCTAGAAGAAGC 1809 Query 1731 CTGAGCCGGAGTCCCACTCGATTGTCTAGGAGAAGCCTAAGCCGGAGTCCCATTCGATCA 1790 |||||||| ||||||| || ||| ||||| |||||||||||||||||||||||||||||| Sbjct 1810 CTGAGCCGTAGTCCCATTCAATTATCTAGAAGAAGCCTAAGCCGGAGTCCCATTCGATCA 1869 Query 1791 CCTAGGAAGAGT--GTGAGCAGGAGTCCAGTCCGATCATCTAGGAAGAGTGTGAGCAGAA 1848 |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1870 CCTAGG-AGA-TCATTGAGCAGGAGTCCAGTCCGATCATCTAGGAAGAGTGTGAGCAGGA 1927 Query 1849 GTCCGGTTCGTTCATCCAGGAGACGTATCAGCAGGAGTCCAGTCCGATCATCTAGGAAGA 1908 |||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 1928 GTCCGGTTCGTTCAGCCAGGAGAAGTATCAGTAGGAGTCCAGTCCGATCATCTAGGAAGA 1987 Query 1909 GTGTGAGCAGGAGTCCTATTCGATTGTCCAGAAGAAGTATCAGCAGGAGTCCT 1961 ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 1988 GTGTGAGCAGGAGTCCTATTCGATTGTCCAGGAGAAGTAACAGCAGGAGTCCT 2040 Score = 159 bits (86), Expect = 8e-38 Identities = 192/240 (80%), Gaps = 19/240 (8%) Strand=Plus/Plus Query 1659 CCT-AGCAGAAGT-CCAGTTCGATCT-TCTAGAAGAAGCCTGAGCCGGAGTCCTATTCAA 1715 ||| ||| | ||| ||| ||| || | |||||||||||||| ||||||||||| |||| | Sbjct 1809 CCTGAGCCGTAGTCCCA-TTCAAT-TATCTAGAAGAAGCCTAAGCCGGAGTCCCATTCGA 1866 Query 1716 TTATCTAGAAGAAGTC--TGAGCCGGAGTCCCACT-CGATTGTCTAGG-AGAAGCCTAAG 1771 | | |||| || | || ||||| ||||| ||| | |||| |||||| || || | || Sbjct 1867 TCACCTAGGAG-A-TCATTGAGCAGGAGT-CCAGTCCGATCATCTAGGAAG-AGTGTGAG 1922 Query 1772 CCGGAGTCCCATTCGATCA-CCTAGGAAG-AGTGTGAGCAGGAGTCCAGTCCGATCATCT 1829 | ||||||| |||| ||| || ||| || ||| | || ||||||||||||||||||||| Sbjct 1923 CAGGAGTCCGGTTCGTTCAGCC-AGG-AGAAGTATCAGTAGGAGTCCAGTCCGATCATCT 1980 Query 1830 AGGAAGAGTGTGAGCAGAAGTCCGGTTCG-TTCATCCAGGAGACGTATCAGCAGGAGTCC 1888 ||||||||||||||||| ||||| |||| || ||||||||| ||| |||||||||||| Sbjct 1981 AGGAAGAGTGTGAGCAGGAGTCCTATTCGATTG-TCCAGGAGAAGTAACAGCAGGAGTCC 2039 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 106043242080 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5