BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32440.2
Length=2207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491481 jgi|Araly1|491481|fgenesh2_kg.7__914__AT4G32440.2 2824 0.0
> Ahg491481 jgi|Araly1|491481|fgenesh2_kg.7__914__AT4G32440.2
Length=2176
Score = 2824 bits (1529), Expect = 0.0
Identities = 2013/2232 (90%), Gaps = 92/2232 (4%)
Strand=Plus/Plus
Query 12 TTACCCGAAACCCTAATCCCCAATTTCTCTTTCAAGTTTTCGATCACGATCTCTGGAAAA 71
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1 TTACCCGAAACCCTAATCCCCAATTTCTCTTCCAATTTTTCGATCACGATCTCTGGAAAA 60
Query 72 TTAAGAGAGAAATTCAAAAACTTCGGGAGTTCAAAGTCTCATTCAGACATTCCAGAAGGT 131
||||||||||||||| |||| ||| || | ||| ||||| ||||||||||||||||||||
Sbjct 61 TTAAGAGAGAAATTC-AAAATTTC-GGCGATCATAGTCTTATTCAGACATTCCAGAAGGT 118
Query 132 -AT-TC------TAGTCGACTGAGTAAA-CAATCATGAGAATCAGAAAAGGAAGTAGAGT 182
|| || |||||||||||| ||| ||||||||||| |||||||||||||||||||
Sbjct 119 GATCTCTTGTTTTAGTCGACTGAG-AAAGCAATCATGAGATTCAGAAAAGGAAGTAGAGT 177
Query 183 TGAGGTATTTAGCAACAAAGAGGCGCCTTATGGTGCGTGGCGATGTGCTGAGATTGTCTC 242
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TGAGGTGTTTAGCAACAAAGAGGCGCCTTATGGTGCGTGGCGATGTGCTGAGATTGTCTC 237
Query 243 GGGTAATGGACATACCTACAATGTTAGATTTTACTCTTTCCAAATTGAACACGAGGAGGC 302
||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 238 GGGTAATGGGCATACCTACAATGTTCGATTTTACTCTTTCCAACTTGAACACGAGGAGGC 297
Query 303 AGTTATGGAGAAAGTTCCAAGGAAGATAATTAGGCCTTGTCCTCCACTTGTGGATGTTGA 362
||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 298 AGTTATGGAGAGAGTTCCCAGGAAGATAATTAGGCCTTGTCCTCCACTACTGGATGTTGA 357
Query 363 GAGATGGGATACTGGTGAATTGGTGGAAGTTCTTGATAATTTTTCCTGGAAAGCTGCCAC 422
|| |||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 358 GAAATGGGAGACTGGTGAATTGGTCGAAGTTCTTGATAATTTTTCATGGAAAGCTGCCAC 417
Query 423 AGTTCGAGAGGAGTTATCTGGACATTACTATGTGGTTCGCTTACTTGGGACTCCAGAAGA 482
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||
Sbjct 418 AGTTCGAGAGGAGTTATCTGGAAATTACTATGTGGTTCGGTTACTTGGGACTCCAGCAGA 477
Query 483 AC-TCACATTTCACAAAGTTAACCTCAGGGCCCGAAAGTCGTGGCAAGATGAGAGATGGG 541
|| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 478 ACGT-ACATTTCACAAAGTTAACCTCAGGGCCCGAAAGTCGTGGCAAGATGAGAAATGGG 536
Query 542 TTGCAATTGGAAAGATATCTGGTTCTCTGAAGTCATCCACACTGACTGGATCAGACGTAC 601
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 537 TTGCAATTGGAAAGGTATCTGGTTCTGTGAAGTCATCCACACTGACTGGATCAGACGTAC 596
Query 602 ATCAGAAGCTACAGCCCCACAGGAACAGCATGCCTCTCCACGAGCCTAGCG-TGGTCTCT 660
||||||||||||||||||| ||||||| ||| ||||||||||||||||| | | ||||||
Sbjct 597 ATCAGAAGCTACAGCCCCATAGGAACAACATACCTCTCCACGAGCCTAGTGAT-GTCTCT 655
Query 661 GCTAGATTGTTAAAGAGGCCGTCACCTTACAACTGGTCTGAATGTGCTGAATCATGTACA 720
|||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| |||
Sbjct 656 GCTAGAATGTTAAAGAGACCGTCACCTTACAACTGGTCTGAATTTGCTGAATCATGCACA 715
Query 721 GG--A-AACCCTAAGAAGATGCGTTCATTGGAAAAAGAAGGACAGCAGCAAAAGGTAGAT 777
|| | |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 716 GGAAACAACCCTAAGAAGATACGATCATTGGAAAAAGAAGGACAGCAGCAAAAGGTAGAT 775
Query 778 GCCATTTCTTGCCGACCAGAAAACAGGGGTGGTAAATCTCACGTGCAAGCTTCCT-TAAA 836
|| ||| |||||||||| ||||| ||||||||||||||||||||||||||||||| | ||
Sbjct 776 GCTATTGCTTGCCGACCTGAAAAAAGGGGTGGTAAATCTCACGTGCAAGCTTCCTCT-AA 834
Query 837 CAATCACAAAACTGGTTACTGTCAAATTGTCAGGGTAAGATCAAAAGGGTTTAGTGAGAG 896
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 835 CAATCACAAAACTGATTACTGTCAAATGGTCAGGGTAAGATCAAAAGGGTTTAGTGAGAG 894
Query 897 TGTTCGTGCTGATGATTGTTCTGATAGCGATGTATGCTCAGTTGGTAGTTGTAGTGCTAC 956
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 895 CGTTCGTGCAGATGATTGTTCTGATAGCGATGCATGCTCAGTTGGTAGTTGTAGTGCTAC 954
Query 957 TAGTTATGATGAGAGTAACATGCCACCTTGTATGCTAGATGGCTCTACTCAACAGGCAGA 1016
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 955 TAGTTATGATGAGAGTAACATGCCACCTTGTATGCTAGATGGCTCTAGTCAACAGGCAGA 1014
Query 1017 CTCATGTAGCAGCGATGCTGAATCTTCTTGTGGCCTGGGGGAAGAACCAAGGTGGAAACA 1076
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1015 CTCATGTAGCAGCGATGCTGAATCTTCTTGTGGCCTCGGGGAAGAACCAAGGAGGAAACA 1074
Query 1077 TTCATCAGTTGGTGATGGAGCAAGAAATTCTTGTAGGTCGGAACTATATTCTTACCGCAG 1136
|||||||| ||||||||||||||||| || |||||||| |||||| |||||||||||||
Sbjct 1075 TTCATCAGCTGGTGATGGAGCAAGAAGGTCCTGTAGGTCTGAACTAAATTCTTACCGCAG 1134
Query 1137 TACTCTGGGGGAATTATTTTCTTCTGGTCCCCTAAGTTGGGAGCAAGAAGCATCATTAAC 1196
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 TACTTTGGGGGAATTATTTTCTTCTGGTCCCCTAAGTTGGGAGCAAGAAGCATCATTAAC 1194
Query 1197 TGATCTTCGTCTTTCTCTTAATATATCAGATGATGAACATTTGATGGAGGAACAATGTTG 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 TGATCTTCGTCTTTCTCTTAATATATCAGATGATGAACATTTGATGGAGGAACAATGTTG 1254
Query 1257 CCTTATCCGGGCATGCAGACCTTTTGCTTCTAGAGGTCTAACTCTGATGCTGGGGTTTAC 1316
|||| | ||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1255 CCTTGTTCGGGCATGCTGACCTTTTGCCTCTAGAGGTCTAACTCTGATGCTGGGGTTTAC 1314
Query 1317 ACCTTCTCCCTTGACCATCTGAGTGGTGCAATACCATACCTGTTCTCCCTCAAAACATAA 1376
| ||||||||||| |||||||| ||||||||||||||| ||| |||||| || ||||||
Sbjct 1315 AACTTCTCCCTTGGCCATCTGAATGGTGCAATACCATAGCTGATCTCCCACATTACATAA 1374
Query 1377 CTGACTTCTATGCCATTTTTATTTTGTCGCTATCTTGATATTGCGGCTTGTTTCAGGGGC 1436
||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1375 CTGACTTTTATGTTATTTTTATTTTGTCGCTATCTTGATATTGCAGCTTGTTTCAGGGGC 1434
Query 1437 TTCTTTCAGGTGTCCTGGAGTCTACTTTGTCCACAGGGACTGAATGCTGTGGTTTGAGCA 1496
|||||||||||||||||||| || |||||||||||||||||||| |||||| ||||||||
Sbjct 1435 TTCTTTCAGGTGTCCTGGAGCCTGCTTTGTCCACAGGGACTGAAAGCTGTGCTTTGAGCA 1494
Query 1497 GGCTTCCTTA--T-T-TG--CAGTCTGGTTGGATAATTTTGCTGACATCATGTCAAGTTC 1550
|| ||||||| | | | |||||||||||| |||||||| ||| ||||| ||||| ||
Sbjct 1495 GGTTTCCTTAGATATATTTACAGTCTGGTTGGTTAATTTTGTTGATATCATATCAAGATC 1554
Query 1551 TGAGTAATATTTCTTTACACTTTTTCGTTCACTCGATATATGTTGCGGTGCTATCTTTTG 1610
|||||||||| |||||||| ||||| |||| | | | |||||||| ||||||||||| |
Sbjct 1555 TGAGTAATATCTCTTTACATTTTTTAGTTCTTTTGGTGTATGTTGCAGTGCTATCTTT-G 1613
Query 1611 TGGTGTTGTGTCT-CCTCTGGTTGCTTTCTTAGAAGTGCATGATGTAGATGCTACCATAT 1669
||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1614 TGGTGTTGTGTCTGCC-CTGGTTGCTTTATTAGAAGTGCATGACGTAGATGCTACCATAT 1672
Query 1670 TTTTACTATTACTAGCTCTCTAAGCCTAATACGTTTAGATGTAGAACACAACGTTGTTTC 1729
||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| ||||
Sbjct 1673 TTTTACTATTACTAGCTTTCTAAGCCTGATACATTTAGATGTAGAACACAACGTTTTTTC 1732
Query 1730 AGTTACATTGGTTCTATTTTCGGTGTTTTTTCCAGACGCATAGCCTATTGATGCTTATTC 1789
||||||||| ||||||||||||||||||||| | | | ||| | |
Sbjct 1733 AGTTACATTTGTTCTATTTTCGGTGTTTTTT--A------T----T-------CTT-T-C 1771
Query 1790 TTTCTGGAAATAAGTGTTGTGGCCTACTGAGAGGTAAGTGTGCAATGGCATGAATGGGGT 1849
| ||||||||| ||||||||| || |||||||||||| |||| ||||||| ||||
Sbjct 1772 T----GGAAATAAGCATTGTGGCCTGTTGGGAGGTAAGTGTGAAATGTCATGAATAGGGT 1827
Query 1850 TAATGTA-----AT-----A-GATGCTCATCCAGAAAATGTGTTTGTGA-TCGGTGTTGA 1897
|||||| || | |||||||||||||||||||||||||||| | | ||||||
Sbjct 1828 TAATGTGTGTCCATCTTGGAAGATGCTCATCCAGAAAATGTGTTTGTGAATTGATGTTGA 1887
Query 1898 TT-CGTTATTCTGATTTGTTCTCATGACTTACTTTCATGGAAAATTATCGAGATGAACGG 1956
|| ||| ||||||||| |||||||||| |||| ||||||| ||||||||||||| ||
Sbjct 1888 TTACGT-ATTCTGATT----CTCATGACTTGCTTTTATGGAAA-TTATCGAGATGAAAGG 1941
Query 1957 GAACACATGCCTGCTTTCTTACTTAGTTTGTCGCATGTGCATTGTGATCGGAGATTGTCC 2016
|||||||||||||||||||| ||||||||||||||||||||||||| | ||||| |||
Sbjct 1942 GAACACATGCCTGCTTTCTTGCTTAGTTTGTCGCATGTGCATTGTG---G-AGATTCTCC 1997
Query 2017 AAGCTCACTCTTCAGA-TGTCTCCAGCAAAGGTAGGTTGTTTGCATGGCAGTATGAAACT 2075
|||||||||||| || |||||||||| ||| |||||||||| |||||||| ||||||||
Sbjct 1998 CAGCTCACTCTTC-GAATGTCTCCAGCCAAGCTAGGTTGTTTACATGGCAGCATGAAACT 2056
Query 2076 CTGAAGCAGAATCCATTAATTTTCACAAAGGTATGGATCCTTTTGAAAGATGTGTCGTGG 2135
| |||| |||||||||||||||||||||||||||||||||||||||| || | | |
Sbjct 2057 CCAAAGCCGAATCCATTAATTTTCACAAAGGTATGGATCCTTTTGAAA-AT-T--C-T-- 2109
Query 2136 TTCTTCAAAGTTTAACATGTTTTTCTTGAGTAGTTTGCTTGCTTATAGAATCAAAACGAG 2195
| |||| |||||||||||||||||||| |||| |||||||| || ||||||||||||
Sbjct 2110 --C--CAAAATTTAACATGTTTTTCTTGAGAAGTT-GCTTGCTTGTAAAATCAAAACGAG 2164
Query 2196 TTTCGTATCTTC 2207
|||| |||||||
Sbjct 2165 TTTCATATCTTC 2176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83074824345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5