BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32450.1
Length=1953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491480 jgi|Araly1|491480|fgenesh2_kg.7__913__AT4G32450.1 1832 0.0
> Ahg491480 jgi|Araly1|491480|fgenesh2_kg.7__913__AT4G32450.1
Length=1760
Score = 1832 bits (992), Expect = 0.0
Identities = 1136/1206 (94%), Gaps = 8/1206 (1%)
Strand=Plus/Plus
Query 585 TCAGCAAGATCATAGTGGTCATAGCTCGTTGGACGAATTGGATTCGATTTGCAGAGAAGG 644
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 466 TCAGCAAGATCATAGTGGTCATAGCTCCTTGGACGAATTGGATGCGATTTGCAGAGAAGG 525
Query 645 GAAGGTTAAAAAAGCTGTTGAAATTATTAAATCATGGAGAAATGAGGGTTATGTTGTGGA 704
|||||| ||| |||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 526 GAAGGTGAAAGAAGCTGTTGATATTATTAAGTCATGGAGAAACGAGGGTTATGTTGTGGA 585
Query 705 TTTACCT-AGACTGTTT-TGGATAGCACAGCTTTGTGGAGATGCACAAGCTTTACAAGAA 762
|||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 TTTA-CTCAGACT-TTTGTGGATAGCACAGCTTTGTGGAGATGCACAAGCTTTACAAGAA 643
Query 763 GCCAAAGTTGTTCATGAGTTTATTACTTCTTCGGTTGGGATTTCAGATATCAGCGCTTAC 822
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 644 GCCAAAGTTGTTCATGAGTTTATTACTTCTTCGGTTGGGACTTCGGATATCAGCGCTTAC 703
Query 823 AACTCGATAATCGAAATGTACTCTGGTTGTGGTTCTGTGGAAGATGCATTAACCGTT-TT 881
|||||||||||| ||||||||||||||||||| |||| ||||||||||||||| || ||
Sbjct 704 AACTCGATAATCCAAATGTACTCTGGTTGTGGGTCTGCAGAAGATGCATTAACC-TTGTT 762
Query 882 CAATAGTATGCCTGAGAGAAACTTGGAGACTTGGTGTGGTGTTATAAGGTGTTTTGCAAA 941
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 763 CAATAGCATGCCTGAGAGGAACTTGGAGACTTGGTGTGGTGTTATAAGGTGTTTTGCAAA 822
Query 942 GAATGGGCAAGGGGAAGACGCCATTGATACGTTCTCTCGGTTTAAACAAGAAGGAAACAA 1001
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 823 GAATGGGCAAGGGGAAGACGCCATTGATATGTTCTCTCGGTTTAAAGAAGAAGGAAACAG 882
Query 1002 ACCTGATGGTGAAATGTTTAAAGAGATCTTCTTTGCGTGTGGTGTTCTTGGTGACATGAA 1061
||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 883 ACCCGATGGTGAAATATTCAAAGAGATCTTCTTTGCCTGTGGTGTTCTTGGTGACATGAA 942
Query 1062 CGAGGGACTGTTGCACTTTGAGTCCATG-TACAAAGAGTATGGAATTATCCCTTGTATGG 1120
|||||| ||||||||||||||||| ||| | ||||||||||||||||||||||| |||||
Sbjct 943 CGAGGGGCTGTTGCACTTTGAGTCGATGGT-CAAAGAGTATGGAATTATCCCTTCTATGG 1001
Query 1121 AACATTACGTGAGCCTCGTTAAAATGTTGGCGGAGCCTGGTTATTTAGATGAAGCCTTGA 1180
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1002 AACACTACGTGAGCCTCGTTAAAATGTTGGCGGAACCTGGTTATTTAGATGAAGCCTTGA 1061
Query 1181 GATTTGTTGAATCGATGGAACCAAATGTAGATTTGTGGGAAACCCTGATGAATCTATCAC 1240
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1062 GATTTGTTGAATCGATGGAACCAAATGTCGATTTGTGGGAAACACTGATGAATCTATCAC 1121
Query 1241 GGGTTCATGGGGATTTAATTCTTGGCGACCGGTGTCAAGATATGGTTGAGCAGCTTGATG 1300
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 GGGTTCACGGGGATTTCATTCTTGGCGACCGGTGTCAAGATATGGTTGAGCAGCTTGATG 1181
Query 1301 CAAGTAGACTGAACAAAGAGTCAAAGGCGGGTCTTGTACCTGTGAAATCATCAGACCTAG 1360
|||||||||| ||||||||||||| ||||||||||||||| || |||||||| |||||||
Sbjct 1182 CAAGTAGACTAAACAAAGAGTCAAGGGCGGGTCTTGTACCGGTCAAATCATCGGACCTAG 1241
Query 1361 TAAAAGAGAAATTACAAAGAATGGCCAAAGGGCCAAATTATGGGATTCGATATATGGCAG 1420
|||||||||||||||| |||||||||||||||||||| |||||| ||||| |||||||||
Sbjct 1242 TAAAAGAGAAATTACAGAGAATGGCCAAAGGGCCAAAGTATGGGTTTCGACATATGGCAG 1301
Query 1421 CTGGAGATATTTCTCGTCCAGAAAACAGAGAGTTGTATATGGCATTGAAGAGTTTAAAGG 1480
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1302 CTGGAGATATTTCTCGTCCAGAAAACAGAGAGTTCTATATGGCATTGAAGAGTTTAAAAG 1361
Query 1481 AGCATATGATAGAAATTGGTTATGTACCTCTATCTAAACTTGCATTGCACGACGTGGACC 1540
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1362 AGCATATGATAGAAATTGGTTATGTACCAGAATCTAAACTTGCATTGCACGACGTGGACA 1421
Query 1541 AAGAGAGCAAAGACGAAAACCTTTTCAATCATAATGAGAGATTCGCTTTCATCTCGACAT 1600
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1422 AAGAGAGCAAAGACGAAAACCTTTTCAATCATAACGAGAGATTCGCTTTCATCAGGACAT 1481
Query 1601 TTCTTGACACTCCTGCGCGTTCGTTAATACGAGTAATGAAAAATCTACGTGTATGCGCAG 1660
|||||||||||||||||||||| ||||| ||| |||||||| |||||||||||| |
Sbjct 1482 TTCTTGACACTCCTGCGCGTTCAACAATACAAGTGGTGAAAAATATACGTGTATGCGTTG 1541
Query 1661 ATTGCCATAACGCATTGAAGTTGATGTCAAAGATAGTTGGGAGAGAGTTGATTTCGCGAG 1720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1542 ATTGCCATAACGCATTGAAGTTGATGTCAAAGATAGTTGGGAGAGAGTTGATTTCGCGAG 1601
Query 1721 ATGCAAAGAGGTTTCACCATATGAAAGATGGTGTTTGCTCCTGTAGAGAGTATTGGTAAC 1780
|||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1602 ATGCAAAGAGGTATCACCATATGAAAGATGGTGTTTGCTCTTGTAGAGACTATTGGTAAC 1661
Query 1781 GTCTTT 1786
|||||
Sbjct 1662 ATCTTT 1667
Score = 409 bits (221), Expect = 5e-113
Identities = 381/451 (84%), Gaps = 39/451 (9%)
Strand=Plus/Plus
Query 90 TTCTAATCGGATCGATTCTGCTTCCGGTTAACCGGTTTTGTTCCC-CGGCGACAATCAGC 148
|||||| |||||||||||||| || ||||||||||||||| |||| |||||||| ||||
Sbjct 49 TTCTAACCGGATCGATTCTGCCTCTGGTTAACCGGTTTTG-TCCCTCGGCGACAGTCAGG 107
Query 149 AATCTC-CTCCCCGGCCAATGATATACACGTTGACGAGAGGTTCGCTTCTCGGCTCTACC 207
|| ||| |||||| ||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 108 AACCTCTCTCCCC-GCCAATGATATACACGTTGACTAGAGGTTCGCTTATCGGCTCTACC 166
Query 208 TGTAAGCTACGCTACTCTTCTTTAT-TTTCTTATCTGAGCACAGCTGCGCTGAGATTGGG 266
||||||||||||||||||| || | |||||||||||||||||||||| | |||||||||
Sbjct 167 CGTAAGCTACGCTACTCTTC-TTCTGTTTCTTATCTGAGCACAGCTGCTCAGAGATTGGG 225
Query 267 TTTTGAAAACCCTACTAATGGAAATCCGATGGATAATTCTTCGCATCACATTGGTTATGT 326
|||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 226 TTTTGAAAACCCTAATAATGGAAACCCGATGGATAATTCTTCACATCACATTGGTTATGT 285
Query 327 AAATGGGTTTAACGGTGGAGAACAATCGCTTGGTGGGTTTCAGCAGAATTCATATGAGCA 386
||||||||||||| |||| ||||||| | |||||||||||||||| | | | | |
Sbjct 286 AAATGGGTTTAACAGTGGCGAACAATTGTTTGGTGGGTTTCAGCA-----C-T-T-A--A 335
Query 387 GAGCTTAAACCCTGTTTCTGGGCAGAATCCGACGAATAGGTTTTATCAAAACGGATACAA 446
| | || |||||||| ||||||||||| | |||||||||||||||| | | |||
Sbjct 336 -A-C-----CC-TGTTTCTGTGCAGAATCCGA--A-TAGGTTTTATCAAAACTGTTCCAA 384
Query 447 TCGGAATCAGAGTTATGGGGAACATAGTGAAATTATTAATCAGAGAAATCAAAATTGGCA 506
|| |||||||||||||| | | | || |||| |||||| |||||||||||||
Sbjct 385 TCAGAATCAGAGTTATGAG-AT--T--TG---TTAT----CAGAGACATCAAAATTGGCA 432
Query 507 AAGTAGTGATGGTTGTTCCTCGTATGGAACT 537
|| |||||||| ||||||||| ||||| |||
Sbjct 433 AACTAGTGATGCTTGTTCCTCATATGGTACT 463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73399902115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5