BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32460.1
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944716 jgi|Araly1|944716|scaffold_700945.1 1784 0.0
> Ahg944716 jgi|Araly1|944716|scaffold_700945.1
Length=1142
Score = 1784 bits (966), Expect = 0.0
Identities = 1087/1146 (95%), Gaps = 6/1146 (1%)
Strand=Plus/Plus
Query 130 TTTGGGGTAGAAAAATTCGAAAGAAATGAAAGAGATGGGAGTGATAGTGCTTCTTCTCCT 189
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 TTTTGGGTAG-AAAATTCGAAAGAAATGAAAGAGATGGGAGTGATAGTGCTTCTTCTACT 59
Query 190 TCACTCGTTCTTCTACGTTGCCTTTTGCTTCAATGATGGACTACTACCAAACGGTGACTT 249
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 60 TCACTCGTTCTTCTACGTTTCCTTGTGCTTCAATGATGGACTACTACCAAACGGTGACTT 119
Query 250 CGAACTCGGTCCACGACATTCGGACATGAAAGGAACACAAGTTATCAACATAACAGCAAT 309
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 CGAACTAGGTCCACGACATTCGGACATGAAAGGAACACAAGTAATCAACATAACAGCAAT 179
Query 310 CCCAAACTGGGAACTCTCAGGCTTTGTCGAGTACATTCCCTCAGGACACAAACAAGGCGA 369
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 180 CCCAAATTGGGAACTCTCAGGATTCGTCGAGTACATTCCCTCAGGACACAAACAAGGCGA 239
Query 370 CATGATCCTTGTCGTGCCTAAAGGCGCATTCGCAGTACGTCTAGGCAACGAAGCCTCAAT 429
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 240 CATGATCCTTGTCGTGCCTAAAGGCGCTTTCGCAGTACGCCTAGGCAACGAAGCCTCAAT 299
Query 430 CAAACAAAAAATCAGCGTTAAGAAAGGG-TCGTACTATTCGATAACGTTCAGTGCTGCTC 488
||||||||||||||||||||| |||||| || ||||||||||| ||||||||||||||||
Sbjct 300 CAAACAAAAAATCAGCGTTAA-AAAGGGATCTTACTATTCGATCACGTTCAGTGCTGCTC 358
Query 489 GAACATGCGCACAAGACGAGCGGTTAAACGTTTCCGTGGCTCCTCACCATGCAGTGATGC 548
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 359 GAACATGCGCACAAGACGAGCGGTTAAACGTTTCTGTGGCTCCTCACCATGCAGTGATGC 418
Query 549 CGATACAAACAGTGTATAGTAGCTCAGGTTGGGATTTGTATTCGTGGGCTTTTAAGGCCC 608
| || |||||||||||||||||||| ||||||||||||||||| ||||||||||| || |
Sbjct 419 CTATCCAAACAGTGTATAGTAGCTCGGGTTGGGATTTGTATTCATGGGCTTTTAAAGCAC 478
Query 609 AAAGTGACTATGCAGATATAGTGATACATAATCCAGGTGTTGAGGAAGATCCTGCTTGTG 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AAAGTGACTATGCAGATATAGTGATACATAATCCAGGTGTTGAGGAAGATCCTGCTTGTG 538
Query 669 GACCTCTCATTGATGGTGTTGCTATGCGAGCCCTTTTCCCTCCTCGTCCCACCAATAAGA 728
|||||||||||||||||||||||||| || |||||| ||||||||| |||||||||||||
Sbjct 539 GACCTCTCATTGATGGTGTTGCTATGAGATCCCTTTACCCTCCTCGACCCACCAATAAGA 598
Query 729 ACATTCTAAAGAACGGAGGATTCGAAGAAGGTCCTTGGGTTTTACCAAACATATCATCTG 788
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ACATTCTCAAGAACGGAGGATTCGAAGAAGGTCCTTGGGTTTTACCAAACATATCATCTG 658
Query 789 GTGTTTTGATTCCACCAAACTCCATCGACGATCACTCTCCGTTACCTGGTTGGATGGTCG 848
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 659 GAGTTTTGATTCCACCAAACTCCATTGACGATCACTCTCCTTTACCTGGTTGGATGGTCG 718
Query 849 AGTCTCTTAAAGCTGTCAAATACATAGATTCCGATCATTTCTCCGTTCCTCAAGGCCGTC 908
| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 719 AATCTCTTAAAGCCGTCAAATACATTGATTCCGATCATTTCTCCGTTCCACAAGGTCGTC 778
Query 909 GCGCCGTCGAACTCGTCGCCGGGAAAGAAAGCGCCGTCGCACAAGTTGTCCGCACTATCC 968
||||||| |||||||||||||| ||||| ||||||||||||||||||||||| || ||||
Sbjct 779 GCGCCGTGGAACTCGTCGCCGGAAAAGAGAGCGCCGTCGCACAAGTTGTCCGTACAATCC 838
Query 969 CTGGAAAAACCTACGTCCTATCCTTCTCTGTCGGAGATGCTAGCAACGCTTGCGCCGGAT 1028
| ||||||||||||||||| || ||| | |||||||||||||||||||||||||| ||||
Sbjct 839 CGGGAAAAACCTACGTCCTCTCTTTCGCCGTCGGAGATGCTAGCAACGCTTGCGCTGGAT 898
Query 1029 CAATGATCGTCGAAGCTTTCGCCGGAAAAGACACGATCAAGGTCCCGTATGAATCGAAAG 1088
| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 899 CTATGATCGTCGAAGCTTTCGCCGGAAAAGACACGATCAAGGTGCCGTACGAATCGAAAG 958
Query 1089 GGAAAGGAGGATTCAAGCGATCGTCATTGAGATTCGTCGCTGTCTC-GAGTCGGACTAGA 1147
|||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 959 GGAAAGGAGGATTCAAGCGATCGTCACTGAGATTCGTCGCTGTCTCTGA-TCGGACTAGA 1017
Query 1148 GTTATGTTCTACAGTACGTTTTACGCGATGAGAAACGACGATTTCTCGAGCTTATGTGGA 1207
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1018 GTTATGTTCTACAGTACGTTTTACGCGATGAGAAACGATGATTTCTCGAGCTTGTGTGGG 1077
Query 1208 CCGGTGATCGACGACGTTAAGCTTCTCAGTGCTCGGAGGCCGTGAGCTTGCGGCGACGAG 1267
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1078 CCGGTGATTGACGACGTTAAGCTTCTCAGTGCTCGGAGGCCGTGAGCTTGCGGCGGCGAG 1137
Query 1268 TTGATT 1273
|| |||
Sbjct 1138 TT-ATT 1142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55726028435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5