BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32460.1 Length=1489 Score E Sequences producing significant alignments: (Bits) Value Ahg944716 jgi|Araly1|944716|scaffold_700945.1 1784 0.0 > Ahg944716 jgi|Araly1|944716|scaffold_700945.1 Length=1142 Score = 1784 bits (966), Expect = 0.0 Identities = 1087/1146 (95%), Gaps = 6/1146 (1%) Strand=Plus/Plus Query 130 TTTGGGGTAGAAAAATTCGAAAGAAATGAAAGAGATGGGAGTGATAGTGCTTCTTCTCCT 189 ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1 TTTTGGGTAG-AAAATTCGAAAGAAATGAAAGAGATGGGAGTGATAGTGCTTCTTCTACT 59 Query 190 TCACTCGTTCTTCTACGTTGCCTTTTGCTTCAATGATGGACTACTACCAAACGGTGACTT 249 ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 60 TCACTCGTTCTTCTACGTTTCCTTGTGCTTCAATGATGGACTACTACCAAACGGTGACTT 119 Query 250 CGAACTCGGTCCACGACATTCGGACATGAAAGGAACACAAGTTATCAACATAACAGCAAT 309 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 120 CGAACTAGGTCCACGACATTCGGACATGAAAGGAACACAAGTAATCAACATAACAGCAAT 179 Query 310 CCCAAACTGGGAACTCTCAGGCTTTGTCGAGTACATTCCCTCAGGACACAAACAAGGCGA 369 |||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 180 CCCAAATTGGGAACTCTCAGGATTCGTCGAGTACATTCCCTCAGGACACAAACAAGGCGA 239 Query 370 CATGATCCTTGTCGTGCCTAAAGGCGCATTCGCAGTACGTCTAGGCAACGAAGCCTCAAT 429 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 240 CATGATCCTTGTCGTGCCTAAAGGCGCTTTCGCAGTACGCCTAGGCAACGAAGCCTCAAT 299 Query 430 CAAACAAAAAATCAGCGTTAAGAAAGGG-TCGTACTATTCGATAACGTTCAGTGCTGCTC 488 ||||||||||||||||||||| |||||| || ||||||||||| |||||||||||||||| Sbjct 300 CAAACAAAAAATCAGCGTTAA-AAAGGGATCTTACTATTCGATCACGTTCAGTGCTGCTC 358 Query 489 GAACATGCGCACAAGACGAGCGGTTAAACGTTTCCGTGGCTCCTCACCATGCAGTGATGC 548 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 359 GAACATGCGCACAAGACGAGCGGTTAAACGTTTCTGTGGCTCCTCACCATGCAGTGATGC 418 Query 549 CGATACAAACAGTGTATAGTAGCTCAGGTTGGGATTTGTATTCGTGGGCTTTTAAGGCCC 608 | || |||||||||||||||||||| ||||||||||||||||| ||||||||||| || | Sbjct 419 CTATCCAAACAGTGTATAGTAGCTCGGGTTGGGATTTGTATTCATGGGCTTTTAAAGCAC 478 Query 609 AAAGTGACTATGCAGATATAGTGATACATAATCCAGGTGTTGAGGAAGATCCTGCTTGTG 668 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 AAAGTGACTATGCAGATATAGTGATACATAATCCAGGTGTTGAGGAAGATCCTGCTTGTG 538 Query 669 GACCTCTCATTGATGGTGTTGCTATGCGAGCCCTTTTCCCTCCTCGTCCCACCAATAAGA 728 |||||||||||||||||||||||||| || |||||| ||||||||| ||||||||||||| Sbjct 539 GACCTCTCATTGATGGTGTTGCTATGAGATCCCTTTACCCTCCTCGACCCACCAATAAGA 598 Query 729 ACATTCTAAAGAACGGAGGATTCGAAGAAGGTCCTTGGGTTTTACCAAACATATCATCTG 788 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 ACATTCTCAAGAACGGAGGATTCGAAGAAGGTCCTTGGGTTTTACCAAACATATCATCTG 658 Query 789 GTGTTTTGATTCCACCAAACTCCATCGACGATCACTCTCCGTTACCTGGTTGGATGGTCG 848 | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 659 GAGTTTTGATTCCACCAAACTCCATTGACGATCACTCTCCTTTACCTGGTTGGATGGTCG 718 Query 849 AGTCTCTTAAAGCTGTCAAATACATAGATTCCGATCATTTCTCCGTTCCTCAAGGCCGTC 908 | ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||| Sbjct 719 AATCTCTTAAAGCCGTCAAATACATTGATTCCGATCATTTCTCCGTTCCACAAGGTCGTC 778 Query 909 GCGCCGTCGAACTCGTCGCCGGGAAAGAAAGCGCCGTCGCACAAGTTGTCCGCACTATCC 968 ||||||| |||||||||||||| ||||| ||||||||||||||||||||||| || |||| Sbjct 779 GCGCCGTGGAACTCGTCGCCGGAAAAGAGAGCGCCGTCGCACAAGTTGTCCGTACAATCC 838 Query 969 CTGGAAAAACCTACGTCCTATCCTTCTCTGTCGGAGATGCTAGCAACGCTTGCGCCGGAT 1028 | ||||||||||||||||| || ||| | |||||||||||||||||||||||||| |||| Sbjct 839 CGGGAAAAACCTACGTCCTCTCTTTCGCCGTCGGAGATGCTAGCAACGCTTGCGCTGGAT 898 Query 1029 CAATGATCGTCGAAGCTTTCGCCGGAAAAGACACGATCAAGGTCCCGTATGAATCGAAAG 1088 | ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 899 CTATGATCGTCGAAGCTTTCGCCGGAAAAGACACGATCAAGGTGCCGTACGAATCGAAAG 958 Query 1089 GGAAAGGAGGATTCAAGCGATCGTCATTGAGATTCGTCGCTGTCTC-GAGTCGGACTAGA 1147 |||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||| Sbjct 959 GGAAAGGAGGATTCAAGCGATCGTCACTGAGATTCGTCGCTGTCTCTGA-TCGGACTAGA 1017 Query 1148 GTTATGTTCTACAGTACGTTTTACGCGATGAGAAACGACGATTTCTCGAGCTTATGTGGA 1207 |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 1018 GTTATGTTCTACAGTACGTTTTACGCGATGAGAAACGATGATTTCTCGAGCTTGTGTGGG 1077 Query 1208 CCGGTGATCGACGACGTTAAGCTTCTCAGTGCTCGGAGGCCGTGAGCTTGCGGCGACGAG 1267 |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1078 CCGGTGATTGACGACGTTAAGCTTCTCAGTGCTCGGAGGCCGTGAGCTTGCGGCGGCGAG 1137 Query 1268 TTGATT 1273 || ||| Sbjct 1138 TT-ATT 1142 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55726028435 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5