BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32480.1
Length=1145
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944713 jgi|Araly1|944713|scaffold_700942.1 1448 0.0
> Ahg944713 jgi|Araly1|944713|scaffold_700942.1
Length=904
Score = 1448 bits (784), Expect = 0.0
Identities = 864/904 (96%), Gaps = 0/904 (0%)
Strand=Plus/Plus
Query 65 tctctcGCCTGCTTCAAGAAATGGATCGGCAAAGTTCCGATGACATCATGAAATTTCTCG 124
|||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 TCTCTCTCCTCCTTCAAGAAATGGATCGGCAAAATTCCGATGACATCATGAAATTTCTCG 60
Query 125 ACGGCATGGCTAGCTCCGACGATGTTCTTTTTGGCTTCCTCGACGAAGGAAACCACTCAC 184
|||||||||||||||||||||||||||||||||| || ||||||| |||||| |||||||
Sbjct 61 ACGGCATGGCTAGCTCCGACGATGTTCTTTTTGGTTTTCTCGACGGAGGAAATCACTCAC 120
Query 185 CGGAGGATTATAACTTCGCCGCCGGCGACGAATCCGAAGTTGACAACGATACCACCGATT 244
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 CGGAGGATTATAACTTCGCCGCCGGCGACGAATCCGAAGTTGACAACGAGACCACCGATT 180
Query 245 GTAATTCAGAAGAGAACAGAAAATTTTGGCAAGAACACGAACAACTTCTCCAGGCGACAC 304
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 GTAATTCAGAAGAGAACAGAAAATTTTGGCAAGAACAAGAACAACTTCTCCAGGCGACAC 240
Query 305 TGTATAGGACAAGTTCAATTGAGACAAAGATAAGACAAGCAACTAAGGAAGCGTTGAAAG 364
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 TATATAGGACAAGTTCAATTGAGACAAAGATAAGACAAGCAACCAAGGAAGCGTTGAAAG 300
Query 365 TAGTTAGATCAAAGGGTTTGGTATGTGTCTGCCGGAGACCGGTTACCGACGGTTGTCGTA 424
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 TAGTTAGATCAAAGGGTTTGGTATGTGTTTGCCGGAGACCGGTTACCGACGGTTGTCGTA 360
Query 425 GCTGTTTACGCGGCGAAGTATCTAGCCTCCTCCGAGAAGCTGGCTATGATTGCGTCATTT 484
||||||||||||||||||| ||| ||| |||||||||||||||||||||||||| |||||
Sbjct 361 GCTGTTTACGCGGCGAAGTGTCTCGCCGCCTCCGAGAAGCTGGCTATGATTGCGCCATTT 420
Query 485 CCAAATCTAAGTGGAGAAGCTCTCATGAGATCCCTGCAGGTGAGCATGAATACTTGGAGG 544
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 CCAAATCCAAGTGGAGAAGCTCTCATGAGATCCCTGCAGGTGAGCATGAATATTTGGAGG 480
Query 545 TCGTGGACAAATCGGTTTCAAAGAAAGGCGAGATCCGGGTGGTGATCGAACTATGTTTTA 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCGTGGACAAATCGGTTTCAAAGAAAGGCGAGATCCGGGTGGTGATCGAACTATGTTTTA 540
Query 605 GGGCGGAGTTTGAGATGGCGAGAGGCAGTGAAGAGTACAAGCGACTCATCGGAATGTTAC 664
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 541 GGGCGGAGTTTGAGATGGCGAGAGGTAGTGACGAGTACAAGCGACTCATCGGAATGTTAC 600
Query 665 CGGAAGTGTATGTCGGGAAAACGGAGAGGCTAAAATCATTAATAAAGATATTGTGCACCG 724
|||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 601 CGGAAGTGTACGTCGGGAAAACGGAGAGGCTAAAATCATTGATAAAAATATTGTGCACCG 660
Query 725 CAGCGAAGAAGTGTATGAAAGACAAGAAGATGCACATGGGTCCTTGGAGAAAACACAAAT 784
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 661 CGGCGAAGAAGTGTATGAAAGACAAGAAGATGCACATGGGTCCTTGGAGAAAACACAAGT 720
Query 785 ACATGCAGGCTAAATGGTTTGGAACTTGTGAGAGAAAATCTGTGTCGCCAGTATCCGAAA 844
|||||||||| |||||| ||||||| |||||||||||||| |||||||| || |||||||
Sbjct 721 ACATGCAGGCGAAATGGCTTGGAACGTGTGAGAGAAAATCGGTGTCGCCGGTGTCCGAAA 780
Query 845 CTGAGGAGAATATGTTTCCGGTGGCAAAGCAGAGGGTTTCTATGTTGAATTATGGTCTTT 904
|||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 CTGAAGAGGATATGTTTCCGGTGGCAAAGCAGAGGGTTTCTATGTTGAATAATGGTCTTT 840
Query 905 TTGGTGCTGGAATAGGCCGTCCGACCGTTGTAGCGGTTGTGTGAAACATCTATATAGACG 964
||||||||||||| |||||||| |||| ||||||||||||||| |||| ||||||||||
Sbjct 841 TTGGTGCTGGAATGGGCCGTCCAACCGCCGTAGCGGTTGTGTGAGACATATATATAGACG 900
Query 965 TACG 968
||||
Sbjct 901 TACG 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42697667040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5