BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32490.1 Length=926 Score E Sequences producing significant alignments: (Bits) Value Ahg888860 jgi|Araly1|888860|Al_scaffold_0007_846 965 0.0 Ahg945198 jgi|Araly1|945198|scaffold_701427.1 490 8e-138 > Ahg888860 jgi|Araly1|888860|Al_scaffold_0007_846 Length=666 Score = 965 bits (522), Expect = 0.0 Identities = 620/668 (93%), Gaps = 4/668 (1%) Strand=Plus/Plus Query 97 ATGGTTTTTG-TCAAAATGACTGATGTTTACTTGATGATTGTGATGTTGATGGGTTTGGG 155 |||| || || |||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 1 ATGG-TTATGATCAAAATGTTTGATGTTTACTTGATGATTGTGATGTTGATGAGTTTGGG 59 Query 156 GTTTAGTATAGAGTTATCAAATGGGCACAAGTTCT-ATGTTGGTGGGAGAGATGGTTGGG 214 ||||| ||| | ||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 60 GTTTACTATGGGGTTATCAAATGGGCACAAGTT-TGATGTTGGTGGGAGAGATGGTTGGG 118 Query 215 TCCTTACTCCTTCCGAGGATTATTCTCATTGGTCTCACCGAAACCGGTTTCAAGTCAACG 274 |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 119 TCCTTACTCCTTCCGAGGATTATTCTCATTGGTCTCACAGAAACCGGTTTCAGGTCAACG 178 Query 275 ACACTCTTTATTTTAAGTACGTGAAGGGAAAAGATTCAGTGTTGGAGGTGAGTGAAAAAG 334 ||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| Sbjct 179 ACACTCTTTATTTTAAGCACGTGAAGGGAAAAGATTCAGTGTTGAATGTGAGTGAAAAAG 238 Query 335 AGTACAACACATGCAACACGACTCACCCTTTGACTTCCCTCTCAGACGGTGACTCTCTCT 394 ||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 239 AGTACAAGACATGCAACACGACTCACCCTTTGGCTTCCCTCTCAGGCGGTGACTCTCTCT 298 Query 395 TCCTACTTAGCCGCTCAGACCCATTCTTCTTCGTCAGCGGCAACTCCGGATCCTGTCTCA 454 |||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| Sbjct 299 TCCTACTTAGCCGCTCAGGCCCCTTCTTCTTCGTCAGCGGCAACTCCGGAAACTGTCTCA 358 Query 455 AAGGTCAAAAGCTAGCCGTAACGGTCATGTCTACCGGACACCACAGCCACACTCCTCGTC 514 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 359 AAGGTCAAAAGCTAGCCGTAACGGTCATGTCTACGGGACACCACAGCCACACTCCTCGTC 418 Query 515 ATCCCTCTCCTTCCCCTTCCCCCTCAGCGTCTCCGGTCCGTAAGGCTTTGTTATCGCCAG 574 |||||||||||||||| ||||||||||| |||||||||| | ||||||||| ||| |||| Sbjct 419 ATCCCTCTCCTTCCCCGTCCCCCTCAGCATCTCCGGTCCATCAGGCTTTGTCATCACCAG 478 Query 575 CGCCTATTCCGGTCCATAAGGCTTTGTCATCGCCAGCGCCTACTCCGGGAGTGGATCCCT 634 |||| | |||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 479 CGCCCACTCCGGTCCATCAGGCTTTGTCATTGCCAGCGCCTACTCCGGGAGTGGATCCCT 538 Query 635 CCCATTCAGAAGTTCTTGCGCCGGCTCCAGGGCCCGCCGCAGCTGTTCGCAATTTGGCCG 694 | |||||||||||||||| || ||||||||| ||| ||||| |||||||||||||||| Sbjct 539 CTGATTCAGAAGTTCTTGCTCCAGCTCCAGGGTCCGTGGCAGCGGTTCGCAATTTGGCCG 598 Query 695 GTTCCGTTGCTCCGGGAGTGATTTCTCTAGGCTTGGTTCTTGTGATTATGATAAGTTCCA 754 ||||||||| |||||| ||| |||| ||||||||||||| |||||||||||||||||||| Sbjct 599 GTTCCGTTGGTCCGGGGGTGGTTTCCCTAGGCTTGGTTCATGTGATTATGATAAGTTCCA 658 Query 755 TGGTTTAG 762 || ||||| Sbjct 659 TGATTTAG 666 > Ahg945198 jgi|Araly1|945198|scaffold_701427.1 Length=691 Score = 490 bits (265), Expect = 8e-138 Identities = 439/519 (85%), Gaps = 28/519 (5%) Strand=Plus/Plus Query 73 ATTAAAGTTTTGGTTCGGATATTGATGGTTTTTGTCAAAATGACTGATGTTTA-CTTGAT 131 ||||| ||||||| |||| | ||||| ||| |||| | | |||| |||| ||| || Sbjct 1 ATTAACGTTTTGGATCGG--A--GATGGATTTGGTCATGAGGTTTGATCTTTACCTT-AT 55 Query 132 GATTGTGATGTTGATGGGTTTGGGGTTTAGTATAGAGTTATCAAATGGGCACAAGTTCTA 191 | ||||||||||||||||| ||||| || || ||| |||||||||| |||| ||||| Sbjct 56 GTTTGTGATGTTGATGGGTATGGGG-TT--TA-AGA--TATCAAATGGATACAAATTCTA 109 Query 192 TGTTGGTGGGAGAGATGGTTGGGTCCTTACTCCTTCCGAGGATTATTCTCATTGGTCTCA 251 ||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 110 TGTTGGTGGGAAAGATGGTTGGGTCCCTACTCCTTCCGAAGATTATTCTCATTGGTCTCA 169 Query 252 CCGAAACCGGTTTCAAGTCAACGACACTCTTTATTTTAAGTACGTGAAGGGAAAAGATTC 311 ||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 170 CCGGAACCGGTTTCAAGTCAACGACACTCTTCATTTTAAGTACGCGAAGGGAAAAGATTC 229 Query 312 AGTGTTGGAGGTGAGTGAAAAAGAGTACAACACATGCAACACGACTCACCCTTTGACTTC 371 ||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||| Sbjct 230 AGTGTTGGAGGTGAGTGAACAAGAGTACAACACATGCAACACGACCCACCCCCTGACTTC 289 Query 372 CCTCTCAGACGGTGACTCTCTCTTCCTACTTAGCCGCTCAGAC-CCATTCTTCTTCGTCA 430 |||||||||||| ||||||||||| |||||||||| ||| | || ||||| ||| | | Sbjct 290 CCTCTCAGACGGAGACTCTCTCTTTCTACTTAGCCACTCCGGTTCC-TTCTTTTTCATTA 348 Query 431 GCGGCAACTC-CGGATCCTGTCTCAAAGGTCAAAAGCTAGCCGT-AACGGTCATGTCTAC 488 | |||||||| | | | ||||| |||||||| ||||||||||| || |||| ||||||| Sbjct 349 GTGGCAACTCTCAAAAC-TGTCTTAAAGGTCAGAAGCTAGCCGTCAA-GGTCTTGTCTAC 406 Query 489 CGGACACCACAGCCACACTCCTCGTCATCCCTCTCCTTCCCC-T-TCC--C-CC-TCAGC 542 || |||||||||||| ||||||||||| ||||||| ||| | | ||| | || ||| | Sbjct 407 CGTCCACCACAGCCACTCTCCTCGTCATACCTCTCCCTCCTCGTCTCCGTCACCGTCA-C 465 Query 543 -GTCTCCGGTCCGTAAGGCTTTGT-TATCGCCAGCGCCT 579 ||||||||||| | ||| ||||| | ||||| | |||| Sbjct 466 TGTCTCCGGTCCATCAGGATTTGTCT-TCGCCGGTGCCT 503 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34348748217 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5