BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32490.1
Length=926
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888860 jgi|Araly1|888860|Al_scaffold_0007_846 965 0.0
Ahg945198 jgi|Araly1|945198|scaffold_701427.1 490 8e-138
> Ahg888860 jgi|Araly1|888860|Al_scaffold_0007_846
Length=666
Score = 965 bits (522), Expect = 0.0
Identities = 620/668 (93%), Gaps = 4/668 (1%)
Strand=Plus/Plus
Query 97 ATGGTTTTTG-TCAAAATGACTGATGTTTACTTGATGATTGTGATGTTGATGGGTTTGGG 155
|||| || || |||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGG-TTATGATCAAAATGTTTGATGTTTACTTGATGATTGTGATGTTGATGAGTTTGGG 59
Query 156 GTTTAGTATAGAGTTATCAAATGGGCACAAGTTCT-ATGTTGGTGGGAGAGATGGTTGGG 214
||||| ||| | ||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 60 GTTTACTATGGGGTTATCAAATGGGCACAAGTT-TGATGTTGGTGGGAGAGATGGTTGGG 118
Query 215 TCCTTACTCCTTCCGAGGATTATTCTCATTGGTCTCACCGAAACCGGTTTCAAGTCAACG 274
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 119 TCCTTACTCCTTCCGAGGATTATTCTCATTGGTCTCACAGAAACCGGTTTCAGGTCAACG 178
Query 275 ACACTCTTTATTTTAAGTACGTGAAGGGAAAAGATTCAGTGTTGGAGGTGAGTGAAAAAG 334
||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||
Sbjct 179 ACACTCTTTATTTTAAGCACGTGAAGGGAAAAGATTCAGTGTTGAATGTGAGTGAAAAAG 238
Query 335 AGTACAACACATGCAACACGACTCACCCTTTGACTTCCCTCTCAGACGGTGACTCTCTCT 394
||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 239 AGTACAAGACATGCAACACGACTCACCCTTTGGCTTCCCTCTCAGGCGGTGACTCTCTCT 298
Query 395 TCCTACTTAGCCGCTCAGACCCATTCTTCTTCGTCAGCGGCAACTCCGGATCCTGTCTCA 454
|||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||
Sbjct 299 TCCTACTTAGCCGCTCAGGCCCCTTCTTCTTCGTCAGCGGCAACTCCGGAAACTGTCTCA 358
Query 455 AAGGTCAAAAGCTAGCCGTAACGGTCATGTCTACCGGACACCACAGCCACACTCCTCGTC 514
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 359 AAGGTCAAAAGCTAGCCGTAACGGTCATGTCTACGGGACACCACAGCCACACTCCTCGTC 418
Query 515 ATCCCTCTCCTTCCCCTTCCCCCTCAGCGTCTCCGGTCCGTAAGGCTTTGTTATCGCCAG 574
|||||||||||||||| ||||||||||| |||||||||| | ||||||||| ||| ||||
Sbjct 419 ATCCCTCTCCTTCCCCGTCCCCCTCAGCATCTCCGGTCCATCAGGCTTTGTCATCACCAG 478
Query 575 CGCCTATTCCGGTCCATAAGGCTTTGTCATCGCCAGCGCCTACTCCGGGAGTGGATCCCT 634
|||| | |||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 479 CGCCCACTCCGGTCCATCAGGCTTTGTCATTGCCAGCGCCTACTCCGGGAGTGGATCCCT 538
Query 635 CCCATTCAGAAGTTCTTGCGCCGGCTCCAGGGCCCGCCGCAGCTGTTCGCAATTTGGCCG 694
| |||||||||||||||| || ||||||||| ||| ||||| ||||||||||||||||
Sbjct 539 CTGATTCAGAAGTTCTTGCTCCAGCTCCAGGGTCCGTGGCAGCGGTTCGCAATTTGGCCG 598
Query 695 GTTCCGTTGCTCCGGGAGTGATTTCTCTAGGCTTGGTTCTTGTGATTATGATAAGTTCCA 754
||||||||| |||||| ||| |||| ||||||||||||| ||||||||||||||||||||
Sbjct 599 GTTCCGTTGGTCCGGGGGTGGTTTCCCTAGGCTTGGTTCATGTGATTATGATAAGTTCCA 658
Query 755 TGGTTTAG 762
|| |||||
Sbjct 659 TGATTTAG 666
> Ahg945198 jgi|Araly1|945198|scaffold_701427.1
Length=691
Score = 490 bits (265), Expect = 8e-138
Identities = 439/519 (85%), Gaps = 28/519 (5%)
Strand=Plus/Plus
Query 73 ATTAAAGTTTTGGTTCGGATATTGATGGTTTTTGTCAAAATGACTGATGTTTA-CTTGAT 131
||||| ||||||| |||| | ||||| ||| |||| | | |||| |||| ||| ||
Sbjct 1 ATTAACGTTTTGGATCGG--A--GATGGATTTGGTCATGAGGTTTGATCTTTACCTT-AT 55
Query 132 GATTGTGATGTTGATGGGTTTGGGGTTTAGTATAGAGTTATCAAATGGGCACAAGTTCTA 191
| ||||||||||||||||| ||||| || || ||| |||||||||| |||| |||||
Sbjct 56 GTTTGTGATGTTGATGGGTATGGGG-TT--TA-AGA--TATCAAATGGATACAAATTCTA 109
Query 192 TGTTGGTGGGAGAGATGGTTGGGTCCTTACTCCTTCCGAGGATTATTCTCATTGGTCTCA 251
||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 110 TGTTGGTGGGAAAGATGGTTGGGTCCCTACTCCTTCCGAAGATTATTCTCATTGGTCTCA 169
Query 252 CCGAAACCGGTTTCAAGTCAACGACACTCTTTATTTTAAGTACGTGAAGGGAAAAGATTC 311
||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 170 CCGGAACCGGTTTCAAGTCAACGACACTCTTCATTTTAAGTACGCGAAGGGAAAAGATTC 229
Query 312 AGTGTTGGAGGTGAGTGAAAAAGAGTACAACACATGCAACACGACTCACCCTTTGACTTC 371
||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||
Sbjct 230 AGTGTTGGAGGTGAGTGAACAAGAGTACAACACATGCAACACGACCCACCCCCTGACTTC 289
Query 372 CCTCTCAGACGGTGACTCTCTCTTCCTACTTAGCCGCTCAGAC-CCATTCTTCTTCGTCA 430
|||||||||||| ||||||||||| |||||||||| ||| | || ||||| ||| | |
Sbjct 290 CCTCTCAGACGGAGACTCTCTCTTTCTACTTAGCCACTCCGGTTCC-TTCTTTTTCATTA 348
Query 431 GCGGCAACTC-CGGATCCTGTCTCAAAGGTCAAAAGCTAGCCGT-AACGGTCATGTCTAC 488
| |||||||| | | | ||||| |||||||| ||||||||||| || |||| |||||||
Sbjct 349 GTGGCAACTCTCAAAAC-TGTCTTAAAGGTCAGAAGCTAGCCGTCAA-GGTCTTGTCTAC 406
Query 489 CGGACACCACAGCCACACTCCTCGTCATCCCTCTCCTTCCCC-T-TCC--C-CC-TCAGC 542
|| |||||||||||| ||||||||||| ||||||| ||| | | ||| | || ||| |
Sbjct 407 CGTCCACCACAGCCACTCTCCTCGTCATACCTCTCCCTCCTCGTCTCCGTCACCGTCA-C 465
Query 543 -GTCTCCGGTCCGTAAGGCTTTGT-TATCGCCAGCGCCT 579
||||||||||| | ||| ||||| | ||||| | ||||
Sbjct 466 TGTCTCCGGTCCATCAGGATTTGTCT-TCGCCGGTGCCT 503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34348748217
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5