BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32520.1 Length=1924 Score E Sequences producing significant alignments: (Bits) Value Ahg491471 jgi|Araly1|491471|fgenesh2_kg.7__904__AT4G32520.1 2651 0.0 > Ahg491471 jgi|Araly1|491471|fgenesh2_kg.7__904__AT4G32520.1 Length=1759 Score = 2651 bits (1435), Expect = 0.0 Identities = 1564/1627 (96%), Gaps = 6/1627 (0%) Strand=Plus/Plus Query 130 TTCTACCTTTCCGGAGTAGAGAGAAAG-ATGCAAGCTTGTTGTGGTGGTAATTCGATGGC 188 ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 73 TTCTACCTTTCCGGAGTAGAGAGAAAGAATGCAAGCTTGTTGTGGTGGTACTTCGATGGA 132 Query 189 TTCTCTTCAGCAACCTGGACGGGTTCAAGGATCTGTCTTTCCCCCAATTATGCCTCCAGT 248 |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 133 TTCTCTTCAGCAACCTGGACGGGTTCAAGGATCTGTCTTTCCCCCACTAATGCCTCCAGT 192 Query 249 GACCAAATTTTCTCAGCAGTTGAAGTTCAATATTTCAAAACCTTTCCGTTCTTCATTTCT 308 |||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| Sbjct 193 GACCAAATTTTCTCAGCAATTGAAGTTCAATTTTTCAAAACCTTTCCGTTCTTCTTTTCT 252 Query 309 GAAAAGAAACCTGGTCTCTGAAATGAGAGCATCTTCAGTCTCGCTACCTAATGTCGAGAT 368 | |||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 253 GGAAAGAAACTTGGTCTTTGAAAGGAGAGCATCTTCAGTCTCGCTACCTAATGTCGAGAT 312 Query 369 AAGCAGCAAAGAAATCCCTTTTGAGGACTATGGTCTTGGTGAAGTTGATCCAGAGGTCCG 428 ||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 313 GAGCAGCAAAGAGATCGCTTTTGCGGACTATGGTCTTGGTGAAGTTGATCCAGAGGTCCG 372 Query 429 AACCATCATCACAAAGGAGAAAGATAGACAATTCAGGAGCTTGGAGCTTATTGCATCTGA 488 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 373 AACGATCATCACAAAGGAGAAAGATAGACAATTCAGGAGCTTGGAGCTTATTGCGTCTGA 432 Query 489 GAATTTCACGTCTCGAGCAGTTATGGAGGCGGTTGGCTCATGCCTTACCAACAAGTATTC 548 |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 433 GAATTTCACGTCTCGAGCTGTTATGGAGGCGGTTGGATCATGCCTTACCAACAAGTATTC 492 Query 549 TGAGGGACTGCCTGGTAAAAGATATTATGGTGGCAATGAGTACATTGATCAGTTGGAGAC 608 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 493 TGAGGGACTGCCTGGTAAAAGATATTATGGTGGCAATGAGTACATCGATCAGTTGGAGAC 552 Query 609 GCTTTGCCAGAACCGGGCTTTGGCAGCCTTCCGCTTAGATTCTACGAAATGGGGGGTTAA 668 |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 553 ACTTTGCCAAAACCGGGCTTTAGCAGCCTTCCGCTTAGATTCTACGAAATGGGGGGTTAA 612 Query 669 TGTTCAGCCGTTATCTGGTTCACCTGCAAACTTTGCTGTCTACACTGCGATACTTAGCCC 728 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 613 TGTTCAGCCGTTATCTGGTTCACCTGCAAACTTTGCTGTCTACACTGCGATACTTAGCCC 672 Query 729 TCATGATCGGATCATGGGTTTGGATTTACCTCACGGTGGTCATCTGTCGCATGGGTTCAT 788 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 673 TCATGATCGGATCATGGGTTTGGATTTACCTCACGGTGGTCATCTGTCGCATGGGTTCAT 732 Query 789 GACCGCTAAAAGGCGTGTATCTGGAACTTCAATATACTTTGAGTCCATGCCTTATCGACT 848 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 733 GACTGCTAAAAGGCGTGTGTCTGGAACTTCAATATACTTTGAGTCCATGCCTTATCGACT 792 Query 849 TGATGAATCAACAGGCATTGTTGACTACGATATGCTCGAGAAAACTGCTACACTTTTCAG 908 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 793 TGATGAATCAACAGGCATTGTTGACTACGATATGCTAGAGAAAACTGCTACACTCTTCAG 852 Query 909 ACCAAAGCTTATTATCGCAGGAGCTAGTGCATACAGCCGAGATTTTGACTATCCTCGCAT 968 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 853 ACCAAAGCTTATTATCGCAGGAGCTAGTGCGTACAGCCGAGATTTTGACTATCCTCGCAT 912 Query 969 GAGGAAGATCGCAGACTCAGTTGGTGCTTTTCTGATGATGGATATGGCTCATATCAGTGG 1028 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 913 GAGGAAGATCGCAGACTCAATTGGTGCTTTTCTGATGATGGATATGGCTCATATCAGCGG 972 Query 1029 GCTTGTGGCTGCTTCTGTGGTAGCTGACCCTTTTGAGTATTGTGATATTGTTACAACAAC 1088 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 973 GCTTGTGGCTGCTTCTGTGGTAGCTGACCCTTTTGAGTATTGTGATATTGTTACAACAAC 1032 Query 1089 AACTCACAAGTCTTTGAGAGGTCCGAGAGGTGGCATGATCTTCTTCAGGAAGGATCCAAT 1148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1033 AACTCACAAGTCTTTGAGAGGTCCGAGAGGTGGCATGATCTTCTTCAGGAAGGATCCAAT 1092 Query 1149 TAATGGGGTTGATCTTGAATCTGCCGTGAACAATGCTGTCTTCCCTGGTTTGCAGGGTGG 1208 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1093 TAATGGGGTTGATCTTGAATCTGCCGTAAACAATGCTGTCTTCCCTGGTTTGCAGGGTGG 1152 Query 1209 CCCTCATAACCACACAATTGGAGGATTAGCAGTCTGCTTGAAACACGCACAATCACCGGA 1268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1153 CCCTCATAACCACACAATTGGAGGATTAGCAGTCTGCTTGAAACACGCACAATCACTGGA 1212 Query 1269 ATTCAAGGCGTACCAGAAAAGAGTTGTGTCTAACTGTAGAGCTCTAGCTAACCGATTGGT 1328 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1213 ATTCAAGGCTTACCAGAAAAGAGTTGTGTCCAACTGTAGAGCTCTAGCTAACCGATTGGT 1272 Query 1329 TGAACTCGGGTTTAAGCTAGTTTCTGGTGGCAGCGATAACCACTTGGTTCTCGTCGATCT 1388 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 1273 TGAACTCGGGTTTAAGCTGGTTTCTGGTGGCAGCGATAACCACTTGGTTCTCGTTGATCT 1332 Query 1389 TAGACCCATGG---GTATGGATGGTGCGCGGGTTGAGAAAATCTTAGACATGGCATCTAT 1445 ||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1333 TAGACCCATGGTAAGCATGGATGGTGCTCGGGTTGAGAAAATCTTAGACATGGCATCTAT 1392 Query 1446 TACTCTCAACAAGAACTCTGTCCCTGGGGACAAAAGTGCGTTGGTACCAGGGGGAATAAG 1505 |||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||| Sbjct 1393 TACTCTTAACAAGAACTCTGTCCCTGGGGATAAAAGTGCGTTGGTTCCAGGAGGAATAAG 1452 Query 1506 GATAGGATCCCCCGCGATGACGACAAGAGGACTGTCAGAGAAAGACTTTGTAGTAGTGGC 1565 ||||||||| || |||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 1453 GATAGGATCGCCTGCGATGACGACAAGAGGACTGTCAGAGAAAGACTTTGTAGCAGTCGC 1512 Query 1566 TGACTTCATCAAGGAAGGTGTGGAGATAACAATGGAAGCCAAGAAAGCCGCGCCGGGTTC 1625 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1513 TGACTTCATCAAGGAAGGTGTGGAGATAACAATGGAAGCCAAGAAAGCTACGCCGGGTTC 1572 Query 1626 AAAGCTTCAAGATTTCAACAAGTTCGTGACATCTCCTGAGTTTCCATTGAA-AGAGAGAG 1684 |||||| |||||||||| |||||||||||| |||||||| |||||||| || |||||||| Sbjct 1573 AAAGCTGCAAGATTTCACCAAGTTCGTGACTTCTCCTGACTTTCCATT-AATAGAGAGAG 1631 Query 1685 TGAAGAGTCTAAAGGAGAGAGTGGAAACCTTCACATCTCGTTTTCCCATTCCTGGCGTTT 1744 |||||||||| ||||| ||||||||| ||||||| |||| |||||||||||||||||||| Sbjct 1632 TGAAGAGTCTCAAGGAAAGAGTGGAATCCTTCACCTCTCATTTTCCCATTCCTGGCGTTT 1691 Query 1745 AAGCTAT 1751 ||||||| Sbjct 1692 AAGCTAT 1698 Score = 91.6 bits (49), Expect = 2e-17 Identities = 66/74 (89%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 26 TCCCGTAAAACCCTAAACATAGTCACTTCATCGTCTC-C-TCCACTGTATCATTCAATCT 83 |||||||||||||||||||||||||||| |||||||| | ||||| ||| |||||||| Sbjct 1 TCCCGTAAAACCCTAAACATAGTCACTTTATCGTCTCTCCTCCACCAAATCCTTCAATCT 60 Query 84 CTGTCTTCCTTCTT 97 | |||||||||||| Sbjct 61 CCGTCTTCCTTCTT 74 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72295285010 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5