BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32520.1
Length=1924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491471 jgi|Araly1|491471|fgenesh2_kg.7__904__AT4G32520.1 2651 0.0
> Ahg491471 jgi|Araly1|491471|fgenesh2_kg.7__904__AT4G32520.1
Length=1759
Score = 2651 bits (1435), Expect = 0.0
Identities = 1564/1627 (96%), Gaps = 6/1627 (0%)
Strand=Plus/Plus
Query 130 TTCTACCTTTCCGGAGTAGAGAGAAAG-ATGCAAGCTTGTTGTGGTGGTAATTCGATGGC 188
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 73 TTCTACCTTTCCGGAGTAGAGAGAAAGAATGCAAGCTTGTTGTGGTGGTACTTCGATGGA 132
Query 189 TTCTCTTCAGCAACCTGGACGGGTTCAAGGATCTGTCTTTCCCCCAATTATGCCTCCAGT 248
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 133 TTCTCTTCAGCAACCTGGACGGGTTCAAGGATCTGTCTTTCCCCCACTAATGCCTCCAGT 192
Query 249 GACCAAATTTTCTCAGCAGTTGAAGTTCAATATTTCAAAACCTTTCCGTTCTTCATTTCT 308
|||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||
Sbjct 193 GACCAAATTTTCTCAGCAATTGAAGTTCAATTTTTCAAAACCTTTCCGTTCTTCTTTTCT 252
Query 309 GAAAAGAAACCTGGTCTCTGAAATGAGAGCATCTTCAGTCTCGCTACCTAATGTCGAGAT 368
| |||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 253 GGAAAGAAACTTGGTCTTTGAAAGGAGAGCATCTTCAGTCTCGCTACCTAATGTCGAGAT 312
Query 369 AAGCAGCAAAGAAATCCCTTTTGAGGACTATGGTCTTGGTGAAGTTGATCCAGAGGTCCG 428
||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 313 GAGCAGCAAAGAGATCGCTTTTGCGGACTATGGTCTTGGTGAAGTTGATCCAGAGGTCCG 372
Query 429 AACCATCATCACAAAGGAGAAAGATAGACAATTCAGGAGCTTGGAGCTTATTGCATCTGA 488
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 373 AACGATCATCACAAAGGAGAAAGATAGACAATTCAGGAGCTTGGAGCTTATTGCGTCTGA 432
Query 489 GAATTTCACGTCTCGAGCAGTTATGGAGGCGGTTGGCTCATGCCTTACCAACAAGTATTC 548
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 433 GAATTTCACGTCTCGAGCTGTTATGGAGGCGGTTGGATCATGCCTTACCAACAAGTATTC 492
Query 549 TGAGGGACTGCCTGGTAAAAGATATTATGGTGGCAATGAGTACATTGATCAGTTGGAGAC 608
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 493 TGAGGGACTGCCTGGTAAAAGATATTATGGTGGCAATGAGTACATCGATCAGTTGGAGAC 552
Query 609 GCTTTGCCAGAACCGGGCTTTGGCAGCCTTCCGCTTAGATTCTACGAAATGGGGGGTTAA 668
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 553 ACTTTGCCAAAACCGGGCTTTAGCAGCCTTCCGCTTAGATTCTACGAAATGGGGGGTTAA 612
Query 669 TGTTCAGCCGTTATCTGGTTCACCTGCAAACTTTGCTGTCTACACTGCGATACTTAGCCC 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 TGTTCAGCCGTTATCTGGTTCACCTGCAAACTTTGCTGTCTACACTGCGATACTTAGCCC 672
Query 729 TCATGATCGGATCATGGGTTTGGATTTACCTCACGGTGGTCATCTGTCGCATGGGTTCAT 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 TCATGATCGGATCATGGGTTTGGATTTACCTCACGGTGGTCATCTGTCGCATGGGTTCAT 732
Query 789 GACCGCTAAAAGGCGTGTATCTGGAACTTCAATATACTTTGAGTCCATGCCTTATCGACT 848
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 733 GACTGCTAAAAGGCGTGTGTCTGGAACTTCAATATACTTTGAGTCCATGCCTTATCGACT 792
Query 849 TGATGAATCAACAGGCATTGTTGACTACGATATGCTCGAGAAAACTGCTACACTTTTCAG 908
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 793 TGATGAATCAACAGGCATTGTTGACTACGATATGCTAGAGAAAACTGCTACACTCTTCAG 852
Query 909 ACCAAAGCTTATTATCGCAGGAGCTAGTGCATACAGCCGAGATTTTGACTATCCTCGCAT 968
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 853 ACCAAAGCTTATTATCGCAGGAGCTAGTGCGTACAGCCGAGATTTTGACTATCCTCGCAT 912
Query 969 GAGGAAGATCGCAGACTCAGTTGGTGCTTTTCTGATGATGGATATGGCTCATATCAGTGG 1028
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 913 GAGGAAGATCGCAGACTCAATTGGTGCTTTTCTGATGATGGATATGGCTCATATCAGCGG 972
Query 1029 GCTTGTGGCTGCTTCTGTGGTAGCTGACCCTTTTGAGTATTGTGATATTGTTACAACAAC 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 GCTTGTGGCTGCTTCTGTGGTAGCTGACCCTTTTGAGTATTGTGATATTGTTACAACAAC 1032
Query 1089 AACTCACAAGTCTTTGAGAGGTCCGAGAGGTGGCATGATCTTCTTCAGGAAGGATCCAAT 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 AACTCACAAGTCTTTGAGAGGTCCGAGAGGTGGCATGATCTTCTTCAGGAAGGATCCAAT 1092
Query 1149 TAATGGGGTTGATCTTGAATCTGCCGTGAACAATGCTGTCTTCCCTGGTTTGCAGGGTGG 1208
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1093 TAATGGGGTTGATCTTGAATCTGCCGTAAACAATGCTGTCTTCCCTGGTTTGCAGGGTGG 1152
Query 1209 CCCTCATAACCACACAATTGGAGGATTAGCAGTCTGCTTGAAACACGCACAATCACCGGA 1268
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1153 CCCTCATAACCACACAATTGGAGGATTAGCAGTCTGCTTGAAACACGCACAATCACTGGA 1212
Query 1269 ATTCAAGGCGTACCAGAAAAGAGTTGTGTCTAACTGTAGAGCTCTAGCTAACCGATTGGT 1328
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1213 ATTCAAGGCTTACCAGAAAAGAGTTGTGTCCAACTGTAGAGCTCTAGCTAACCGATTGGT 1272
Query 1329 TGAACTCGGGTTTAAGCTAGTTTCTGGTGGCAGCGATAACCACTTGGTTCTCGTCGATCT 1388
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1273 TGAACTCGGGTTTAAGCTGGTTTCTGGTGGCAGCGATAACCACTTGGTTCTCGTTGATCT 1332
Query 1389 TAGACCCATGG---GTATGGATGGTGCGCGGGTTGAGAAAATCTTAGACATGGCATCTAT 1445
||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1333 TAGACCCATGGTAAGCATGGATGGTGCTCGGGTTGAGAAAATCTTAGACATGGCATCTAT 1392
Query 1446 TACTCTCAACAAGAACTCTGTCCCTGGGGACAAAAGTGCGTTGGTACCAGGGGGAATAAG 1505
|||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1393 TACTCTTAACAAGAACTCTGTCCCTGGGGATAAAAGTGCGTTGGTTCCAGGAGGAATAAG 1452
Query 1506 GATAGGATCCCCCGCGATGACGACAAGAGGACTGTCAGAGAAAGACTTTGTAGTAGTGGC 1565
||||||||| || |||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1453 GATAGGATCGCCTGCGATGACGACAAGAGGACTGTCAGAGAAAGACTTTGTAGCAGTCGC 1512
Query 1566 TGACTTCATCAAGGAAGGTGTGGAGATAACAATGGAAGCCAAGAAAGCCGCGCCGGGTTC 1625
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1513 TGACTTCATCAAGGAAGGTGTGGAGATAACAATGGAAGCCAAGAAAGCTACGCCGGGTTC 1572
Query 1626 AAAGCTTCAAGATTTCAACAAGTTCGTGACATCTCCTGAGTTTCCATTGAA-AGAGAGAG 1684
|||||| |||||||||| |||||||||||| |||||||| |||||||| || ||||||||
Sbjct 1573 AAAGCTGCAAGATTTCACCAAGTTCGTGACTTCTCCTGACTTTCCATT-AATAGAGAGAG 1631
Query 1685 TGAAGAGTCTAAAGGAGAGAGTGGAAACCTTCACATCTCGTTTTCCCATTCCTGGCGTTT 1744
|||||||||| ||||| ||||||||| ||||||| |||| ||||||||||||||||||||
Sbjct 1632 TGAAGAGTCTCAAGGAAAGAGTGGAATCCTTCACCTCTCATTTTCCCATTCCTGGCGTTT 1691
Query 1745 AAGCTAT 1751
|||||||
Sbjct 1692 AAGCTAT 1698
Score = 91.6 bits (49), Expect = 2e-17
Identities = 66/74 (89%), Gaps = 2/74 (3%)
Strand=Plus/Plus
Query 26 TCCCGTAAAACCCTAAACATAGTCACTTCATCGTCTC-C-TCCACTGTATCATTCAATCT 83
|||||||||||||||||||||||||||| |||||||| | ||||| ||| ||||||||
Sbjct 1 TCCCGTAAAACCCTAAACATAGTCACTTTATCGTCTCTCCTCCACCAAATCCTTCAATCT 60
Query 84 CTGTCTTCCTTCTT 97
| ||||||||||||
Sbjct 61 CCGTCTTCCTTCTT 74
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72295285010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5