BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32530.2
Length=1060
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944707 jgi|Araly1|944707|scaffold_700936.1 704 0.0
Ahg481412 jgi|Araly1|481412|fgenesh2_kg.4__472__AT2G25610.1 211 8e-54
> Ahg944707 jgi|Araly1|944707|scaffold_700936.1
Length=591
Score = 704 bits (381), Expect = 0.0
Identities = 397/405 (98%), Gaps = 0/405 (0%)
Strand=Plus/Plus
Query 117 gagagagagagagagagagagagagGATGTCTGGTGTGGTTGCTCTTGGTCATGCGAGCT 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGAGAGAGAGAGAGAGAGAGAGAGGATGTCTGGTGTGGTTGCTCTTGGTCATGCGAGCT 60
Query 177 CGTGGGGCGCAGCGCTGGTAAGGATCTCGCCGTATACTTTCTCCGCAATCGGAATCGCCA 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGTGGGGCGCAGCGCTGGTAAGGATCTCGCCGTATACTTTCTCCGCAATCGGAATCGCCA 120
Query 237 TCTCGATCGGTGTCTCAGTCCTCGGTGCCGCCTGGGGAATTTACATTACGGGAAGTAGTT 296
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTCGATCGGCGTCTCAGTCCTCGGTGCCGCCTGGGGAATTTACATTACGGGAAGTAGTT 180
Query 297 TGATCGGTGCGGCTATAGAAGCTCCTCGTATTACTTCGAAGAATCTCATCAGTGTCATCT 356
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 181 TGATCGGTGCGGCTATAGAAGCTCCTCGTATCACTTCCAAGAATCTCATCAGTGTCATCT 240
Query 357 TTTGCGAAGCTGTTGCTATATATGGAGTTATTGTTGCAATCATACTGCAAACAAAGTTGG 416
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 TTTGCGAAGCTGTAGCTATATATGGTGTTATTGTTGCAATCATACTGCAAACAAAGTTGG 300
Query 417 AGAGTGTCCCATCTTCAAAGATGTATGATGCTGAGTCTCTTAGAGCTGGATATGCAATCT 476
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 AGAGTGTCCCATCTTCAAAGATGTATGACGCTGAGTCTCTTAGAGCTGGATATGCAATCT 360
Query 477 TTGCATCTGGAATTATAGTTGGATTCGCCAACCTTGTATGCGGGT 521
| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 TCGCATCTGGAATCATAGTTGGATTCGCCAACCTTGTATGCGGGT 405
Score = 279 bits (151), Expect = 2e-74
Identities = 184/199 (92%), Gaps = 6/199 (3%)
Strand=Plus/Plus
Query 605 TGCAGGTTATGTGTAGGAATCATTGGAAGCAGTTGTGCATTGTCCGATGCTCAGAACTCC 664
||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 399 TGCGGGTTATGTGTAGGAATCATTGGAAGCAGTTGTGCATTGTCTGATGCTCAAAACTCG 458
Query 665 ACACTTTTTGTAAAGATTCTTGTGATCGAGATATTCGGGAGTGCTCTCGGGTTGTTTGGA 724
||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 459 ACACTCTTCGTAAAGATTCTTGTGATTGAGATCTTCGGGAGTGCTCTCGGGTTGTTTGGA 518
Query 725 GTTATTGTGGGAATTATTATGTCTGCACAAGCGACATGGCCAACGAAATAGatatatata 784
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GTTATTGTGGGAATCATTATGTCTGCACAAGCGACATGGCCAACGAAATAGATATAT--- 575
Query 785 tatCCGGTCTGTATATGTT 803
||||||||||||||||
Sbjct 576 ---CCGGTCTGTATATGTT 591
> Ahg481412 jgi|Araly1|481412|fgenesh2_kg.4__472__AT2G25610.1
Length=814
Score = 211 bits (114), Expect = 8e-54
Identities = 155/175 (89%), Gaps = 2/175 (1%)
Strand=Plus/Plus
Query 611 TTATGTGTAGGAATCATTGGAAGCAGTTGTGCATTGTCCGATGCTCAGAACTCCACACTT 670
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||
Sbjct 404 TTATGTGTAGGAATCATTGGAAGCAGTTGTGCGTTGTCTGATGCTCAGAACTCGACGCTC 463
Query 671 TTTGTAAAGATTCTTGTGATCGAGATATTCGGGAGTGCTCTCGGGTTGTTTGGAGTTATT 730
||||| |||||||||||||| ||||| || || ||||||||||||||||||||||||||
Sbjct 464 TTTGTTAAGATTCTTGTGATTGAGATCTTTGGTAGTGCTCTCGGGTTGTTTGGAGTTATC 523
Query 731 GT-GGGAATTATTATGTCTGCACAAGCGACATGGCCAACGAAATAGatatatata 784
|| |||| | |||||||| || ||||| |||||||| || ||||||| |||||||
Sbjct 524 GTTGGGA-TCATTATGTCGGCTCAAGCTACATGGCCTACAAAATAGAGATATATA 577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39457219095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5