BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32540.1
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353573 jgi|Araly1|353573|fgenesh1_pg.C_scaffold_7000746 2039 0.0
> Ahg353573 jgi|Araly1|353573|fgenesh1_pg.C_scaffold_7000746
Length=1245
Score = 2039 bits (1104), Expect = 0.0
Identities = 1199/1246 (96%), Gaps = 2/1246 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTCTCATCCTCACAACAAAACTGACCAGACCCAGCATATCATCCTCGTACACGGT 60
|||||| ||||||| ||||||||||| ||||||| | |||||||||||||||||||||||
Sbjct 1 ATGGAGGCTCATCCACACAACAAAACCGACCAGAGCAAGCATATCATCCTCGTACACGGT 60
Query 61 CCCATCATCATCGGAGCTGGCCCTTCTGGTCTTGCCACTTCAGCATGTCTCTCGAGCCGT 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 CCCATCATCATCGGAGCTGGCCCTTCCGGTCTTGCCACTTCAGCATGTCTCTCGAGCCGT 120
Query 121 GGAGTCCCTTCTTTGATCCTAGAACGGTCGGATTCAATAGCATCTCTATGGAAATCTAAA 180
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 121 GGAGTCCCTTCTTTGATCCTAGAACGGTCGGACTCAATAGCATCTCTATGGAAATCAAAA 180
Query 181 ACCTACGACCGACTCAGACTCCATCTCCCAAAACACTTTTGCCGGTTACCCCTCCTGGAC 240
|||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||
Sbjct 181 ACCTACGACCGACTCAAACTCCATCTCCCAAAGCACTTTTGCCGGTTACCTCTCTTGGAT 240
Query 241 TTCCCTGAATATTACCCAAAATACCCTTCCAAAAACGAGTTCTTGGCCTACCTTGAGTCC 300
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 TTCCCTGAATATTTCCCAAAATACCCTTCCAAAAACGAGTTTTTGGCCTACCTTGAGTCC 300
Query 301 TACGCTTCCCACTTCCGCATCGCT-CCAAGGTTCAACAAGAACGTACAAAACGCAGCTTA 359
|||||||||||||||||||||| | |||||||||||||||||||| || ||||||||||
Sbjct 301 TACGCTTCCCACTTCCGCATCG-TCCCAAGGTTCAACAAGAACGTCCAGAACGCAGCTTT 359
Query 360 CGATTCTTCCTCCGGTTTCTGGAGAGTAAAGACTCATGATAACACAGAGTACCTCTCCAA 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGATTCTTCCTCCGGTTTTTGGAGAGTAAAGACTCATGATAACACAGAGTACCTCTCCAA 419
Query 420 ATGGCTTATCGTAGCCACCGGTGAGAACGCAGATCCATACTTCCCCGAGATTCCAGGGAG 479
|||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 420 ATGGCTTATCGTGGCCACCGGTGAAAACGCTGATCCATACTTCCCCGAGATTCCAGGGAG 479
Query 480 AAAGAAGTTTTCCGGCGGAAAAATCGTTCACGCGAGTGAGTACAAAAGCGGCGAAGAGTT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AAAGAAGTTTTCCGGCGGAAAAATCGTTCACGCGAGTGAGTACAAAAGCGGCGAAGAGTT 539
Query 540 CCGGCGGCAGAAAGTTTTGGTTGTCGGATGTGGAAATTCCGGCATGGAAATTAGCTTAGA 599
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 540 CCGGCGGCAGAAAGTTTTGGTCGTCGGTTGTGGAAATTCCGGCATGGAAATTAGCTTAGA 599
Query 600 CCTCGTCCGACATAACGCATCTCCTCATCTTGTTGTCCGGAACACCGTTCATGTGTTGCC 659
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 CCTTGTCCGACATAACGCATCTCCTCATCTTGTTGTCCGAAACACCGTTCATGTGTTGCC 659
Query 660 AAGGGAGATACTTGGGGTATCAACATTTGGAGTTGGAATGACACTTCTCAAATGCTTACC 719
|||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||
Sbjct 660 AAGGGAGATACTTGGGCTGTCAACATTTGGAGTTGGGATGACACTTCTCAAATGCTTACC 719
Query 720 CTTAAGGCTCGTTGACAAGTTCTTGTTATTGATGGCCAATCTTTCGTTTGGAAATACCGA 779
||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 720 CTTAAGGCTTGTTGACAAGTTCTTGCTATTGATGGCCAGTCTTTCGTTTGGAAATACCGA 779
Query 780 CCGGTTGGGCCTTCGCCGACCAAAAACGGGTCCGCTTGAGCTGAAAAATGTCACCGGCAA 839
|||||| || |||||||||||||||||||||||||||||||| |||||| ||||||| ||
Sbjct 780 CCGGTTAGGTCTTCGCCGACCAAAAACGGGTCCGCTTGAGCTAAAAAATATCACCGGAAA 839
Query 840 AAGTCCGGTTCTCGATGTCGGAGCTATGTCTCTCATCAGATCCGGCATGATTCAGATAAT 899
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 840 AAGTCCGGTCCTCGATGTCGGAGCTATGTCTCTCATCAGATCTGGCATGATTCAGATAAT 899
Query 900 GGAAGGTGTAAAGGAAATAACAAAGAAAGGAGCAAAGTTTATGGATGGTCAAGAAAAGGA 959
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 900 GGAAGGTGTAAAGGAAATGACAAAGAATGGAGCAAAGTTTATGGATGGTCAAGAAAAGGA 959
Query 960 CTTTGACTCTATCATATTTGCCACTGGTTACAAAAGCAACGTGCCTACTTGGCTTCAGGG 1019
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CTTTGACTGTATCATATTTGCCACTGGTTACAAAAGCAACGTGCCTACTTGGCTTCAGGG 1019
Query 1020 AGGTGATTTTTTCACGGACGATGGGATGCCGAAAACGCCGTTTCCTAACGGCTGGAGAGG 1079
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AAGTGATTTTTTCACGGACGATGGGATGCCGAAAACGCCGTTTCCTAACGGCTGGAGAGG 1079
Query 1080 AGGGAAAGGATTGTACACAGTTGGTTTTACGAGAAGAGGACTCCTTGGAACGGCGTCTGA 1139
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1080 AGGGAAAGGATTGTACACAGTTGGGTTTACGAGGAGAGGACTCCTTGGAACGGCGTCTGA 1139
Query 1140 CGCCGTTAAGATCGCTGGCGAAATTGGTGACCAGTGGAGAGACGAAATCAAGGGGTCCAC 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CGCCGTTAAGATCGCTGGCGAAATTGGTGACCAGTGGAGAGACGAAATCAAGGGGTCCAC 1199
Query 1200 CAGGAATATGTGCAGTTCTCGTTTTGTCTTTACCTCTAAATCCTAA 1245
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CAGGAATATGTGCAGTTCTCGTTTTGTCTTTACCTCTAAATCCTAA 1245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49941021270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5