BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32560.1
Length=1183
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491462 jgi|Araly1|491462|fgenesh2_kg.7__895__AT4G32560.1 1574 0.0
> Ahg491462 jgi|Araly1|491462|fgenesh2_kg.7__895__AT4G32560.1
Length=1095
Score = 1574 bits (852), Expect = 0.0
Identities = 1027/1110 (93%), Gaps = 17/1110 (2%)
Strand=Plus/Plus
Query 15 GGTGATGGAGAAAGACGATAACAGTGACAAGGTTTGTCTTTCAGTGAAGGAGAAATATAC 74
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||
Sbjct 1 GGTGATGGAGAAAGACGATAACAGCGACAAGGTTTATCTTTCAGTGAAGGAGAAATGTAC 60
Query 75 GTCAGAGCAGCCTGAGGAAATGGTGACAAATCTGAAGGCATCTGTAAGAGAATTGAGTGT 134
||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct 61 GTCAGAGCAGCCTGAGGAAATGGTGACAAATCTCAAGGCATCTATAAGAGATTTGAGTGT 120
Query 135 GAAAGTGAAAGAACAGAATCAGAGAAAATGTGATGCTAAGGATAAG-TTGCAGCAGTTGC 193
||||||||| ||||||||||||||||||||| ||| |||||||||| || ||||||||||
Sbjct 121 GAAAGTGAACGAACAGAATCAGAGAAAATGTCATGTTAAGGATAAGCTT-CAGCAGTTGC 179
Query 194 GAGAAAGAATAAGCAAGGAAGTTGTTGATGTTTCAGTCCAGGAGTTGATACCGCTTCTTA 253
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 180 GAGAAAGGATAAGCAAGGAAGGTGTTGATGTTTCAGTCCAGGAGTTGATACCGCTTCTGA 239
Query 254 GATCACTCAAGGAATTTGTGAAGGAGGAATCTGAAGTCAGGTCTCGTTGTAATGTTAAAC 313
||||| |||||||| | | |||||||||||| ||||| ||||| |||||| | |
Sbjct 240 GATCATTCAAGGAAGTAGAAAAGGAGGAATCTCAAGTCCGGTCTAATTGTAA-G-----C 293
Query 314 GTTCTGCTTTAGAAGATGCAGTTCATGATTTGGAGGAGAGAGCTGGTAAGGGGCTTGATG 373
||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 294 GTTCTGCTTTAGAAGATGCAGTTCATGGTTTGGAGGAGAGAGTTGCTAAGGGGCTTGATG 353
Query 374 GTGAGATTCAAGAGGAAGATTTAGATGGTTTGTTGGTTGTATCTTTAGATAATCTCACTT 433
||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||
Sbjct 354 GTGAGATTCAAGAGGAAGATTTAGATGGTTTGTTGTTTGAATCTTTAGATAAGCTCACTT 413
Query 434 CAGCAAAGAAGGAGCTTGGAGCAACGCTAAGAGAGATAGTCTCTCTGAAGCGACAGATTG 493
|||||||||||||||||| ||| | |||||||| ||||| |||||||||||||||||||
Sbjct 414 CAGCAAAGAAGGAGCTTGCTGCAGCACTAAGAGAAATAGTGTCTCTGAAGCGACAGATTG 473
Query 494 ACGATGTGCCATGCCAATCTGAACTCCTCCAATATGAAAGAAGATTCTCAGAGCTGAATG 553
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 ATGATGTGCCATGCCAATCTGAACTCCTCCAATATGAAAGAAGATTCTCAGAGCTGAATG 533
Query 554 TCTGTATTCAGGAGAAACTTCAACAAACTAGGAAGCTCTATGCAACATACAATGCTCTTT 613
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 534 TCTGTATTCAGGAGAAACTTCAACAAACTAGGAAGCTCTATGCAACATACAATACGCTTT 593
Query 614 TAGAAATCAAAGATTTGATGCTTAAGGAGACATCATTATTGAATTCCATAGGTTCACAGT 673
|||||||||||||||||||||| |||||||||||| || ||||||| || ||||||||||
Sbjct 594 TAGAAATCAAAGATTTGATGCTAAAGGAGACATCACTACTGAATTCAATTGGTTCACAGT 653
Query 674 TTCAAGACGTGATTGGTACTCCTGCTGGCCGTGTGAAGCTTATTGATTCAATGGAAGGAG 733
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TTGAAGACGTGATTGGTACACCTGCTGGCCGTGTGAAGCTTATTGATTCAATGGAAGGAG 713
Query 734 TCATGAAAGGAATCCAACAGAAGATTGGAAAAATACAACTTGGGCTTCAAGAAGAGCAGA 793
|||||||||||||||||||||| || |||||| ||||| |||||||||||||||||||||
Sbjct 714 TCATGAAAGGAATCCAACAGAAAATAGGAAAAGTACAAGTTGGGCTTCAAGAAGAGCAGA 773
Query 794 GGCTCCGTGATGCTTCAAAAGAAAAGTATATAGCTGCAGCTGCAGAGCAAAGAAAATGCT 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GGCTCCGTGATGCTTCAAAAGAAAAGTATATAGCTGCAGCTGCAGAGCAAAGAAAATGCT 833
Query 854 ACACTGTACTAAGAGCATACCAGGAGGAATGTACTAAGAATGAGAGGCTGAGAAGTCATA 913
|||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct 834 ACACTGTACTAAGAGCATCCCAGGAGGAATGTACTAAGAATGAGAAGCTGAGGAGTCATA 893
Query 914 TATCTGCCATGAACGAACACCTCTGACTCGAA-GAAGGGTTTGAATAAGGTGATATGAAG 972
||||||| || | |||||||||||||| || |||||| | ||||| | ||||||||
Sbjct 894 TATCTGC--TGTA--AACACCTCTGACTCCAAAGAAGGGGTGGAATA-G---ATATGAAG 945
Query 973 TGACTCTCCTTTCGAGTTACAGCTAACCAGAGTAGAGCCAGAGTTGATTTAGATATGATT 1032
|| |||||||||| |||| ||||||||||| |||||||||||||||||||||| ||||||
Sbjct 946 TGGCTCTCCTTTCTAGTTTCAGCTAACCAGTGTAGAGCCAGAGTTGATTTAGACATGATT 1005
Query 1033 CTCTTGTGATGTGATGTATCCATATGCTCAGCCTTACATGGAAATATACGAAAATCGATA 1092
|||||||||| || ||||||||||||||||||||| || |||||||||||||||| |||
Sbjct 1006 CTCTTGTGATATGCTGTATCCATATGCTCAGCCTTGCACGGAAATATACGAAAATTTATA 1065
Query 1093 GGCCTAGAAATAGTAGGTTTGGTTGACCAA 1122
||||||||||||| ||||||||||||||||
Sbjct 1066 GGCCTAGAAATAGCAGGTTTGGTTGACCAA 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44146337886
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5