BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32570.1
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328475 jgi|Araly1|328475|fgenesh1_pm.C_scaffold_7000702 1537 0.0
> Ahg328475 jgi|Araly1|328475|fgenesh1_pm.C_scaffold_7000702
Length=1056
Score = 1537 bits (832), Expect = 0.0
Identities = 1005/1084 (93%), Gaps = 29/1084 (3%)
Strand=Plus/Plus
Query 160 ATGGTGAACCACAACAATGGCCAGCGACCCACTGATATTGATTCTCGTCTCCGACAGACA 219
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGAACCACAACATTGGCCAGCGACCCACTGATATTGATTCTCGTCTCCGACAGACA 60
Query 220 GAACAAGATAAGCTCTTGTTCCATGACTTTTTAGGCTCCAAGAATCCTACTTTAGCATCC 279
|||||||||||||||||||||||||||||| |||||||||||| ||| |||||||| |||
Sbjct 61 GAACAAGATAAGCTCTTGTTCCATGACTTTCTAGGCTCCAAGACTCCAACTTTAGCCTCC 120
Query 280 ACTTCCATGGCTGACCATAGGCTACCACCGGATAATAAGGCGGCTAAAGCGGCGATGACT 339
||| ||||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 121 ACTCCCATGGCTGACCATAGGATACCACCGG------A------TAAAGCGGCGATGACT 168
Query 340 CCTTCCACGGCTTCTGCTTCCTCCGCCGGTGGACTCGGCGGTCTCTCCTCAACCTCCGAT 399
|| || ||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 169 CCCTCTACGGCTTCTGCTTCCACCGCCGGTGGACGCGGCGGTCTCTCCTCAACCTCCGAT 228
Query 400 CTCGTCGAAAGACACAGCGGCGGTGGGAATCATCTTGATGGGATACAATTGTTTGGACCA 459
|||||||||||||||||||| || |||||||||||||||||||| ||| |||||||||||
Sbjct 229 CTCGTCGAAAGACACAGCGGTGGAGGGAATCATCTTGATGGGATGCAAGTGTTTGGACCA 288
Query 460 AGAAGTGATGTTTCTGGCTCAATCATGAGCAATCGGTTTTCAGGAAATAAGAGAAGTAAC 519
|||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 289 AGAAGTGATGCTTCTGGCTCAATCATGAGCAATCGATTTTCAGGAAACAAGAGAAGTAAC 348
Query 520 TCTGATTCTCACTTCACGACTCAGGAGCACCCAGAGACTCTGCATTGGTCCAAGTTGCTT 579
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 349 TCGGATTCACACTTCACGACTCAAGAGCACCCAGAGACTCTGCATTGGTCCAAGTTGCTT 408
Query 580 AGAAACGGACCTGGAAGCTTCTCCATGAATGTGAATCCTTTGGCAAACCAGCCTCCACGC 639
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 AGAAACGGGCCTGGAAGCTTCTCCATGAATGTGAATCCTTTGGCAAACCAGCCTCCACGC 468
Query 640 GGAGGAGGACAGATCAGTCATTTGCTTCATCAGCTGTCTACTAGCAGGTTCAAAGATGAG 699
||||| || |||| ||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 469 GGAGGGGGGCAGACCAGTCATTTGCTTCATCAGCTGTCTACAAGCAGATTTAAAGATGAA 528
Query 700 AACGTAGGCCCATCAGTTATTGCTCAGACAGCTGCTGATGAAGGTTCACGAACAGGGATG 759
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 AACGTAGGCCTATCAGTTATTGCTCAGACAGCTGCTGATGAAGGTTCACGAACAGGGATG 588
Query 760 AAAGGTCCCGGTATCTTGAGTTCTTTTACAATGCCAAACTCAAGCAAGCTCGAAAGTTTT 819
||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||
Sbjct 589 AAAGGTCCCGGTATCTTGAGTTCTTTTACAATGCCAAGCTCGAGCAAGCTAGAAAGTTTT 648
Query 820 GCCCCTTCAAATACCGGAAATCGGAAAGACTTGGCGTCGAGTACTAAGCAAATGACCATC 879
|||| ||||| |||| |||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 649 GCCCATTCAAGTACCAGAAATCAGAAAGACTTGGCGTCGAGTACAAAGCAAATGACCATC 708
Query 880 TTCTATGGCGGTCAAGCTCATGTCTTTGATGACGTTCACCCAAACAAGGCGGATGTGATA 939
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 709 TTCTATGGCGGTCAAGCTCATGTCTTTGATGATGTTCACCCAAACAAGGCGGATGTGATA 768
Query 940 ATGGCCTTGGCAGGATCAAGCGGAGGCTCATGGTCTACGGGTTTGTCTCATAAACCGAAG 999
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 769 ATGGCCTTGGCAGGATCAAGCGGGGGCTCATGGTCTACGGGTTTGTCTCATAAACCGAAG 828
Query 1000 TCGAAGAACAACACAAGTGACGGTCCATACAAGCTAGGCCAAATGTATGAAGGAGGCAGC 1059
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 829 TCGAAGAACAACACAAGTGACGGTCCATACAAACTAGGCCAAATGTATGAAGGAGGCAGC 888
Query 1060 TCTA-AGGAAACACCACAAATGCCCCCGGAATTTCGTGCAAGGCCGAGTCATCAACCTAC 1118
|||| || ||||||| | || ||||||| ||||||||||||||||| |||||||||||
Sbjct 889 TCTAGAG-AAACACCCCTTTTGGCCCCGGAGTTTCGTGCAAGGCCGAGCCATCAACCTAC 947
Query 1119 CTCCAGTGCCTGTCACCGGATCTTTACACAACCAGGTAGAGAGCATCAAGGAAGCATCAT 1178
|||||||||||||||||||||||||||||||||||| | || ||||| || |
Sbjct 948 CTCCAGTGCCTGTCACCGGATCTTTACACAACCAGG-A-AG--CATCA--------TC-T 994
Query 1179 CTCAAGGGGACGAGATATCAGAGATCCGGTTCACAGATCAGATCCTGAAAAAGAAGCCAC 1238
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 995 C--AAGGGGACGAGATATCAGAGATCCGGTTCACATATCAGATCCTGAAAAAGAAGCCTC 1052
Query 1239 ATGA 1242
||||
Sbjct 1053 ATGA 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53973877165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5