BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G32590.3

Length=724
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944698 jgi|Araly1|944698|scaffold_700927.1                        767    0.0  


> Ahg944698 jgi|Araly1|944698|scaffold_700927.1
Length=570

 Score =  767 bits (415),  Expect = 0.0
 Identities = 472/499 (95%), Gaps = 6/499 (1%)
 Strand=Plus/Plus

Query  87   GGAAGAAATGGCTTCGTTAGGTTTCAACCTCGGCTTCACCTTCTCCAATGCACAAATTCA  146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  16   GGAAGAAATGGCTTCGTTAGGTTTCAACCTCGGCTTCACCTTCTCCAATGCACGAATTCA  75

Query  147  GCAGCATCGAAAAGTTTCCGGAGGTGGAAGAGCTCGCGTAATCTCCTGTAACAG-----C  201
            |||||||||||||||||||||| ||||||| | |||||| ||||||||||||||     |
Sbjct  76   GCAGCATCGAAAAGTTTCCGGAAGTGGAAGGGTTCGCGTTATCTCCTGTAACAGCTCTTC  135

Query  202  -tcttcttcttcttcttctCAAGCATCATCTCCTCAGGGGATTTCTGCAGTGACGCCTCT  260
             |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| 
Sbjct  136  TTCTTCTTCTTCTTCTTCTCAAGCATCATCTCCGCAGGGGATTTCTGCAGCGACGCCTCC  195

Query  261  TGAGATAGAGCTCGAGTTCTTCGGTCCGAAGCCGGGTAGCGACGGGTCATATCCGGTAGA  320
            |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct  196  TGAGATAGAGCTCGAGTTCTTCGGTCCGAAGCCGGGGAGCGACGGGTCGTATCCGGTGGA  255

Query  321  TAAAGCAAAGGCTGTGAGTGGAGATAAGCTTCTCAGAAGCATTATGCAGGATAACAAAAT  380
            |||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct  256  TAAAGCCAAGGCTGTGAGCGGAGAGAAGCTTCTGAGAAGCATTATGCAGGATAACAAAAT  315

Query  381  TGAACTCTACGCTGCTTACGGGAAAGTGATGAACTGTGGTGGTGGAGGAAGCTGTGGAAC  440
             |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct  316  CGAACTCTACGCTGCTTACGGGAAACTGATGAACTGTGGAGGTGGAGGAAGCTGTGGAAC  375

Query  441  TTGCATTGTGGAGATACTCGATGGCAGAGATCTTCTGAATGAGAGAACAGATACAGAAAA  500
            |||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct  376  TTGCATTGTGGAGATACTAGACGGCAGAGATCTTCTGAACGAGAGAACAGATACAGAAAA  435

Query  501  CCGGTACCTGAAAAAGAAGCCGGAATCTTGGAGACTCGCATGTCAAACAATAGTAGGGAA  560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  436  CCGGTACCTGAAAAAGAAGCCGGAATCTTGGAGACTCGCATGTCAAACAATAGTAGGGAA  495

Query  561  CAAAGAAAACTCAGGAAAG  579
            |||||||||||||||||||
Sbjct  496  CAAAGAAAACTCAGGAAAG  514


 Score = 75.0 bits (40),  Expect = 7e-13
 Identities = 40/40 (100%), Gaps = 0/40 (0%)
 Strand=Plus/Plus

Query  594  AGGTTGTCGTGCAGCGGATTCCACAGTGGAAGAAGTGAAT  633
            ||||||||||||||||||||||||||||||||||||||||
Sbjct  513  AGGTTGTCGTGCAGCGGATTCCACAGTGGAAGAAGTGAAT  552



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26647918983


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5