BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32600.1
Length=2027
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328473 jgi|Araly1|328473|fgenesh1_pm.C_scaffold_7000700 2163 0.0
> Ahg328473 jgi|Araly1|328473|fgenesh1_pm.C_scaffold_7000700
Length=1470
Score = 2163 bits (1171), Expect = 0.0
Identities = 1288/1344 (96%), Gaps = 9/1344 (1%)
Strand=Plus/Plus
Query 294 ATGGGTGTTTCTCTTCTGAAACAACAACATCGTATTACAAATCAAGCTGATACTTTTTCT 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTGTTTCTCTTCTGAAACAACAACATCGTATTACAAATCAAGCTGATACTTTTTCT 60
Query 354 AGATTCATGGAAAGATCACCAGAGAATAATCTAAGCAGAAATGAGCACATCATCATTGAC 413
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 61 AGATTCATGGAAAGATCACCAGAGAATAATCTTAGCCGAAATGAGCACATCATCATTGAC 120
Query 414 ATTCCAAGAAATGCCGCCATTGCATCATCATCATCTTCTCATGATAGAATCTCAAATGTT 473
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 121 ATTCCAAGAAATGCCGCCATTGCATCATCATCTTCATCTCATGATAGAATCTCAAATGTT 180
Query 474 TTGGAACCTTTACAACATGAGGAAGAGAGACCTTCTACTGTTTCTCCCATGGCTGCTCCT 533
|||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||
Sbjct 181 TTGGAACCTTTACAACATGAGGAAGATAGACCTTCAACTGTTCCTCCCATGGCTGCTCCT 240
Query 534 CAGCCAGCTACAGCTACAGcttcttcttcttcttctATGCGATCAAATCCTAGAAGTGTC 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAGCCAGCTACAGCTACAGCTTCTTCTTCTTCTTCTATGCGATCAAATCCTAGAAGTGTC 300
Query 594 CGTCGTAGAAGAAGTCCTTTGAATTCTGGCTTATGGATTTCTATTGAACTATTCCTCACT 653
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGTCGTAGAAGAAGTCCTTTAAATTCTGGCTTATGGATTTCTATTGAACTATTCCTCACT 360
Query 654 GTTGGTCAGATCATTGCAGCTATTGTCGTTTTGTCTTTGTCAAAACATGAGCATCCTCGT 713
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTGGTCAGATCATTGCAGCCATTGTCGTTTTGTCTTTGTCAAAACATGAGCATCCTCGT 420
Query 714 GCTCCTTTGTTCACTTGGATTGTTGGTTATGCGTGTGGATGCGTTGCTACACTCCCGCTT 773
|| || |||||||| |||||||| |||||||| |||||||||||||| |||||||| |||
Sbjct 421 GCACCCTTGTTCACCTGGATTGTGGGTTATGCTTGTGGATGCGTTGCCACACTCCCACTT 480
Query 774 TTGTACTGGAGATATTATCATTCGAATCAGGCTTCTGAACAGGATTCTGGTCAGCACCGT 833
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 481 TTGTACTGGAGATATTATCATTCGAATCAGGCTTCTGAACAGGATTCTGGCCAGCATCGT 540
Query 834 CCTAATCTTAATGTTGCAGCAGGACCATTCGCCTTCTCGATATCCAGGACATCCGAAGCA 893
|||||||||||||||||||| ||||| |||||||||||||| || |||||||| |||| |
Sbjct 541 CCTAATCTTAATGTTGCAGCTGGACCTTTCGCCTTCTCGATTTCAAGGACATCTGAAGGA 600
Query 894 GATGGTCGACAGACCAATACCACCTCTTCTCGTGGTAGTAGATATCCTGGGTTTATAAGT 953
|||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 601 GATGGTCGACAGACTAATACCACCTCTTCTCGTGTTAGTAGATATCCTGGGTTCATAAGT 660
Query 954 GCTGCCAGACTTAAAGTTATCGTGGAATACTTCAAAATGGCTCTGGATTGCTTCTTTGCG 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCTGCCAGACTTAAAGTTATCGTGGAATACTTCAAAATGGCTCTGGATTGCTTCTTTGCG 720
Query 1014 GTGTGGTTTGTGGTAGGTAATGTATGGATATTTGGAGGGCATTCATCTGCTGCCGAGGCT 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTGTGGTTTGTGGTAGGTAATGTATGGATATTTGGAGGGCATTCATCTGCTGCCGAGGCT 780
Query 1074 CCTAACTTGTACAGGTTATGTTTAGTGTTTCTTACCTTTAGCTGTATTGGCTACGCGATG 1133
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CCTAACTTGTACAGATTATGTTTAGTGTTTCTTACCTTTAGCTGTATTGGCTACGCGATG 840
Query 1134 CCCTTCATCCTCTGTACAACAATATGTTGCTGCTTGCCTTGCATAATCTCAATTCTCGGA 1193
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 841 CCCTTCATCCTCTGTACAACAATATGTTGTTGCTTGCCGTGCATAATCTCAATTCTCGGA 900
Query 1194 TATAGAGAAGATTTAACGCAACCTCGAGGTGCCACACCTGAGTCGATTAATGCGTTGCCG 1253
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 901 TATAGAGAAGATTTAACTCAACCTCGAGGTGCCACACCTGAGTCGATTAATGCATTGCCA 960
Query 1254 ACTCATAAATTTAAGTTGAAGAAAAGCAGAAGTAATGGCGATGACAATGGTTCAAGTACT 1313
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 961 ACTCATAAGTTTAAGTTGAAGAAAAGCAGAAGTAGTGGCGATGACAATGGTTCAAGTACT 1020
Query 1314 AGCGAAGGTGGAGTTGTGGCGGCTGGAACAGATAACGAACGAGCTATTTCAGGAGAGGAC 1373
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1021 AGCGAAGGTGGAGTCGTGGCGGCTGGAACAGATAACGAACGTGCTATTTCAGGAGAGGAT 1080
Query 1374 GCAGTCTGTTGCATTTGCTTAGCGAAATATGCGAATAACGAGGAGTTAAGAGAGCTTCCA 1433
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 1081 GCAGTCTGTTGCATTTGCTTAGCGAAATATGCAAATAATGAGGAGTTGAGAGAGCTTCCA 1140
Query 1434 TGCTCACATTTCTTCCACAAAGAGTGCGTTGACAAATGGCTGAAGATCAATGCCTCTTGC 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TGCTCACATTTCTTCCACAAAGAGTGCGTTGACAAATGGCTGAAGATCAATGCCTCTTGC 1200
Query 1494 CCTCTATGCAAGAGCGAAGTTGGGGAGAAGAACTCTGATTTGACTAGCCAAGGGATCTTA 1553
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1201 CCTCTTTGCAAGAGCGAAGTTGGGGAGAAGAACTCTGATTTGACAAGCCAAGGGATCTTG 1260
Query 1554 ACCTCGCTCTCTTCTGGGGAAAACGATAACCATcaacaacagcaacaacaacaacGGAGT 1613
| ||||||||||||||||||||||||||||||||||||||| | |||| |||||
Sbjct 1261 AGCTCGCTCTCTTCTGGGGAAAACGATAACCATCAACAACA--A-CAAC------GGAGT 1311
Query 1614 GAACTTAGAGTTGAGAATGGTTTG 1637
|||||||||||||| |||| ||||
Sbjct 1312 GAACTTAGAGTTGATAATGATTTG 1335
Score = 195 bits (105), Expect = 1e-48
Identities = 131/143 (92%), Gaps = 4/143 (3%)
Strand=Plus/Plus
Query 1664 GATTTGCTCTATGTCCGAGAAAACGGCA-AA-TTAGCCGTTTGGCGATGTTCCTACACAA 1721
|||||| || ||| ||||||||||||| || ||| |||| |||||||||||||||||
Sbjct 1330 GATTTG--CTGTGTTCGAGAAAACGGCACAAGAAAGCTGTTTTGCGATGTTCCTACACAA 1387
Query 1722 AATGGGGTTTGCTTCTCATTGCTAAGAAGGTGAAGAAAGACACGGCGAAGATCCTGTTCT 1781
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1388 AATGGGGTTTGCTTCTCATTGCTAAGAAGGTGAAGAAAGACACAGCGAAGATCCTGTTCT 1447
Query 1782 GTAAATGCTTTTTGCCGTTGTGA 1804
||||||||||||||| |||||||
Sbjct 1448 GTAAATGCTTTTTGCAGTTGTGA 1470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76218580245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5