BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32610.1
Length=1640
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328472 jgi|Araly1|328472|fgenesh1_pm.C_scaffold_7000699 1393 0.0
Ahg932734 jgi|Araly1|932734|scaffold_400722.1 606 1e-172
> Ahg328472 jgi|Araly1|328472|fgenesh1_pm.C_scaffold_7000699
Length=1650
Score = 1393 bits (754), Expect = 0.0
Identities = 881/940 (94%), Gaps = 17/940 (2%)
Strand=Plus/Plus
Query 460 ATGGTTGGTGGTGGAAACAGGAGAGATGAGGGATCGATGCCGATTCAGAACACCAACTTG 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTTGGTGGTGGAAACAGGAGAGATGAGGGATCGATGCCGATTCAGAACACCAACTTG 60
Query 520 TTTGCTGCTTTGGATACTTCGAGGAAGAAGAAGAAGTCTGATAAGGCTGGTAAGAGCAAA 579
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TTTGCTGCTTTGGATACTTTGAGGAAGAAGAAGAAGTCAGATAAGGCTGGTAAGAGCAAA 120
Query 580 GCTTCCTCTAAGAGAGAAGATTCACAGAAGGAGCCTGAGCCACAGGTTTTCTGGGCACCT 639
|||||||||||| || ||| |||||| |||||||||||||||||||| ||||||||||||
Sbjct 121 GCTTCCTCTAAGGGACAAGTTTCACAAAAGGAGCCTGAGCCACAGGTCTTCTGGGCACCT 180
Query 640 ACGCCTCTCAAAGCAAAGGCTTGGGCTGATATCGATAGCGATGATGAAGATGATGATTAT 699
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 181 ACGCCTCTCAAAGCAAAGGCTTGGGCCGATATCGATAGCGATGATGAAGATGACGACTAT 240
Query 700 TACGCTACCACTGCTCCACCTCAGTCCCTGTGGAGCACTTCTGAAGCCTCCCATTCAGAT 759
||||||||| ||||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct 241 TACGCTACCTCTGCTCCACCTCAGTCCGTTTGGAGCACTTCTGAAGCCTCCCATTCCGAT 300
Query 760 GCTAAAGACGTTCCCGCTGAGGAAATTGAAAGCGAAGAAGACACTCTTGATGATGGAGAT 819
||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 301 GCTAAAGACGTTCACGCTGAGGAAAGTGAAAGCGAAGAAGACACTCTTGATGAAGGAGAT 360
Query 820 GATGATGATGTGGAGGAAGATCACGAGCAGGGAACAGAGACACAAGTTCATCCAGAAGCA 879
||||| |||||||||||||| || |||||||||||||||||| |||||||||||||||
Sbjct 361 GATGACGATGTGGAGGAAGAGCAGGAGCAGGGAACAGAGACA---GTTCATCCAGAAGCA 417
Query 880 GAGCCTGAGGTGAAAAAGGCTCCTGAAGTTCGTGCTCCTCCTAAGGAGGCAGAGAGGCAA 939
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 418 GAGCCTGAGGTGAAAAAGGCTCCTGAAGTTCCTGCACCTCCTAAGGAGGCAGAGAGGCAA 477
Query 940 CTTTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTTGAGGCTTTGCTAGCAGAT 999
|| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 478 CTGTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTCGAGGCTTTGTTAGCAGAT 537
Query 1000 TTTGGAGTTGCAACCAAAGATGAGAATGGTCA-ACAAGACTCTCAAGATAAGGGGGAGAA 1058
|||||||| ||| ||||||||||||||||||| | |||||||||||||||||| |||||
Sbjct 538 TTTGGAGTCGCACCCAAAGATGAGAATGGTCATA-AAGACTCTCAAGATAAGGAAGAGAA 596
Query 1059 GAAAGAAGTGAATGATgagggagagaagaaggagaacacaaccggagaatcaaaggcctc 1118
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 597 GAAAGAAGTGAATGATGAGGGAGAGAAGAGGGAGAACACAACCGGAGAATCAAAGGCCTC 656
Query 1119 aaagaagaagaaaaagaaggacaaacagaaggagctaaaagaatcccagagtgaagtgaa 1178
||||||||||||||||||||| |||||||| |||||||||||| | ||||| |
Sbjct 657 AAAGAAGAAGAAAAAGAAGGATAAACAGAAAGAGCTAAAAGAA-----G--TGAAG--A- 706
Query 1179 gaGCAACTCGGATGCTGCAAGTGAGTCCGCTGAGCAGGAGGAGTCTTCTTCTTCCATCGA 1238
| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 707 G--CAACTCAGATGCTGCAAGTGAGTCCGCTGAGCAGGAGGAGTCTTCTTCTTCCATTGA 764
Query 1239 CGTCAAAGAACGGCTAAAGAAGATTGCATCAATGAAGAAGAAGAAATCAAGCAAGGAGGT 1298
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 765 TGTCAAAGAACGTCTAAAGAAGATTGCATCAATGAAGAAGAAGAAATCAAGCAAAGAGGT 824
Query 1299 TGATGGTGCTTCAACAGCTGCTGCAAAGGAAGCAGCTGCGAGGAAGGCAAAGTTGGCCGC 1358
|||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 825 GGATGGTGCCTCAACAGCCGCCGCAAAGGAAGCAGCTGCGAGGAAGGCAAAGTTGGCCGC 884
Query 1359 AGCgaagaaaaaagaaaagaaaaaCTACAATCAGCAACCT 1398
|||||||||||||||||||||||||||||||||||||||
Sbjct 885 GGCGAAGAAAAAAGAAAAGAAAAACTACAATCAGCAACCT 924
> Ahg932734 jgi|Araly1|932734|scaffold_400722.1
Length=1068
Score = 606 bits (328), Expect = 1e-172
Identities = 782/990 (79%), Gaps = 76/990 (8%)
Strand=Plus/Plus
Query 457 AAGATGGTTGGTGGTGGAAACAGGAGAGATGAGGGATCGATGC-CGATTCAGAACACCAA 515
||||||| ||| |||||||||||||||||||| |||||||| | |||| |||| |||||
Sbjct 18 AAGATGGCTGGAGGTGGAAACAGGAGAGATGAAGGATCGAT-CACGATCCAGAGTACCAA 76
Query 516 CTTGTTTGCTGCTTTGGATACTTCG-AGGAAGAAGAAGAAGTCTGATAAGGCTGGTAAGA 574
|||||||| ||||||||||| ||| | ||||||||||||||| | | || ||||
Sbjct 77 TTTGTTTGCAGCTTTGGATAC-TCGTAAGAAGAAGAAGAAGTC-----A-G--GG-AAGA 126
Query 575 GCAAAGCTTCCTCTAAGAGA-GAAGATTCACAGAAGGAGCCTGAGCCACAGGT-TTTCTG 632
||||| || |||||| | | ||| || |||||||||||||||| ||||| ||| ||
Sbjct 127 ACAAAGGGTCTTCTAAGTCACG-AGAGCCAGAGAAGGAGCCTGAGCCTCAGGTCTTT-TG 184
Query 633 GGCACCTACGCC-TCTCAAAGCAAAGGCTTGGGCTGATATCGATAG-CGATGATGAAGAT 690
||||||||| || | | |||| ||| ||||||||||||| ||| | || ||||| |||
Sbjct 185 GGCACCTACTCCGT-TGAAAGTTAAGTCTTGGGCTGATATTGAT-GATGACGATGATGAT 242
Query 691 GATGATTATTACGCTACCACTGCTCCACCTCAGTCCCT-G-TGGAGCACTTCTGAAGCC- 747
||||| ||||| || ||||||||||| ||||||| || | ||||||||||||| |||
Sbjct 243 GATGACTATTATGCAACCACTGCTCCTCCTCAGT--CTGGTTGGAGCACTTCTG-TGCCT 299
Query 748 TCCCATTCAGATGCTAAAGACGTTCCCGCT-GAGGAAATTGAAAGCGAAGAAGACACTCT 806
|||||||| ||| | |||||||||| | | ||||||| |||||| || || || | |||
Sbjct 300 TCCCATTCGGATTCGAAAGACGTTCATG-TCGAGGAAAGTGAAAGTGAGGACGATATTCT 358
Query 807 TGATGATGGAGATGATGATGATGTGGAGGAAGATCACGAGCAGGGAACAGAGACACAAGT 866
|||||| || ||||||||||||||||||||| || || |||| ||||||| ||| ||
Sbjct 359 TGATGA---AGGTGATGATGATGTGGAGGAAGAGCAGGAACAGGAAACAGAGGTACAGGT 415
Query 867 TCATCCAGAAG-CAGAGCCTGAGGTGAA-AAAGGCTCCTGAAGTTCGTGCTCCTCCTAAG 924
|||||||| || | |||||||||||||| ||| ||||||||||||| ||| ||||||||
Sbjct 416 TCATCCAG-AGCCTGAGCCTGAGGTGAAGAAA-GCTCCTGAAGTTCCTGCACCTCCTAAA 473
Query 925 GAGGCAGAGAGGCAACTTTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTTGAG 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GAGGCAGAGAGGCAACTTTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTTGAG 533
Query 985 GCTTTGCTAGCAGATTTTGGAGTTGCAACCAAAGATGAG-AATGGTCAACAAGACTCTCA 1043
|||||| | || |||||||| ||||| |||| || || ||||| ||| | || | |||
Sbjct 534 GCTTTGTTGGCTGATTTTGGTGTTGCTCCCAAGGA-GAATAATGGCCAAGATGAATTTCA 592
Query 1044 AGAT---AAGGGGGAGAAGAAAGAAG-TG--AATG-ATgagggagagaagaaggagaa-- 1094
||| || || |||||||||| || |||| | ||||||||||||||||||||
Sbjct 593 AGAGGCCAAACATGAAAAGAAAGAAGATGTCAATGGA-GAGGGAGAGAAGAAGGAGAATG 651
Query 1095 ca-caaccggagaatcaaaggcctcaaagaagaagaaaaagaaggacaaacagaaggagc 1153
|| || || || |||||||| ||||| |||||||| |||||||| || |||||||||
Sbjct 652 CAGCAGGTGGGGAGTCAAAGGCATCAAAAAAGAAGAAGAAGAAGGATAAGCAGAAGGAGG 711
Query 1154 taaaagaatccca-gagt-g-aagtgaagaGCAACT-CGGATGCTGCA-AGTGA-G-TCC 1206
|||||||||| || ||| | ||| || | ||| | | ||||||| | | ||| | | |
Sbjct 712 TAAAAGAATCTCAAGAGCAGCAAGCAAACAACAA-TGCTGATGCTGTAGA-TGAAGCTGC 769
Query 1207 -G---CTGAGC-AG--GAGGA-GTCTTCTTCTTCCATCGACGTCAAAGAACGGCT-AAAG 1257
| |||| | | ||||| | || | | || || ||||||||| |||| |||
Sbjct 770 TGGGTCTGAACCAACTGAGGAAGAAA-CT-C--CAATTGATGTCAAAGAAAGGCTGAAA- 824
Query 1258 AAGATTGCATCAATGAAGAAGAAGAAATCAAGCAAGGAGGTTGATGGTGCTTC-AACAGC 1316
||| ||||||| |||||||||||||| ||| |||| ||||| |||| ||| | || |||
Sbjct 825 AAGCTTGCATCCATGAAGAAGAAGAAGTCAGGCAAAGAGGTGGATGCTGCAGCTAA-AGC 883
Query 1317 TGCTGCAAAGGAAGCAGCTGCGAGGAAGGCA-AAGTTGGCCGCAGCgaagaaaaaagaaa 1375
|||||| ||||||||||||| || | | | ||| ||||||| || ||||| || || |
Sbjct 884 TGCTGCGGAGGAAGCAGCTGCAAG-ACGTAAGAAGCTGGCCGCTGCAAAGAAGAAGGAGA 942
Query 1376 agaaaaaCTACAATCAGCAACCTGTGAGGT 1405
|||| |||| || || || |||||| |||
Sbjct 943 AGAACCACTATAACCAACAGCCTGTGCGGT 972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61477655430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5