BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32630.2 Length=2463 Score E Sequences producing significant alignments: (Bits) Value Ahg491451 jgi|Araly1|491451|fgenesh2_kg.7__884__AT4G32630.2 3112 0.0 > Ahg491451 jgi|Araly1|491451|fgenesh2_kg.7__884__AT4G32630.2 Length=2200 Score = 3112 bits (1685), Expect = 0.0 Identities = 1959/2088 (94%), Gaps = 31/2088 (1%) Strand=Plus/Plus Query 74 ttcgactggtt-c-c-tcttctttttgtaag---gtttttctcttctct-tttttttttt 126 ||||||||||| | | |||||| |||||||| |||||||||||||| | |||||||| Sbjct 1 TTCGACTGGTTCCTCATCTTCTCTTTGTAAGTTTTTTTTTCTCTTCTCTCTCTTTTTTTT 60 Query 127 GTT-TGTTTGAACATTTTAGAGCATC-AGGGGCTTGAAGCTTAAAATTTCCCATGTTTCT 184 || | ||||||||||||||| || | | |||||| | |||| |||| || ||||||||| Sbjct 61 CTTCT-TTTGAACATTTTAGAACA-CAAAGGGCTTCACGCTTGAAATCTCTCATGTTTCT 118 Query 185 CGCATGTAACGATTTCTCATTTGAGATATTGTTTTTCTTCATGAGAGAGGCATTTTTCCA 244 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 119 CGCATGTAACGATTTCTCATTTGAGATATTGTTTTTCTTGATGAGAGAGGCATTTTTCCA 178 Query 245 AGAATGAAGGAAGACGAGCGAACCGAAAAGGCTATCCGGAGTTTATTGAAGCTTCCTGAG 304 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 AGAATGAAGGAAGGCGAGCGAACCGAAAAGGCTATCCGGAGTTTATTGAAGCTTCCTGAG 238 Query 305 AACCGGA-GATGCATCAATTGCAATAGTCTGGGTCCACAATATGTATGCTCAACTTTCTG 363 |||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 239 AACC-GACGATGCATCAATTGCAATAGTCTGGGTCCACAATATGTCTGCTCAACTTTCTG 297 Query 364 GACTTTTGTCTGCGTTAACTGCAGCGGAATCCACCGAGAATTCACACATCGTGTTAAATC 423 ||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 298 GACTTTTGTCTGCATAAACTGCAGCGGAATCCATCGAGAATTCACACATCGTGTTAAATC 357 Query 424 TGTATCAATGGCCAAGTTCACAGCAGACGAAGTTAGTGCACTTCGCGCAGGAGGAAACGA 483 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 358 TGTATCAATGGCCAAGTTCACAGCAGAAGAAGTTAGTGCGCTTCGCGCAGGAGGAAACGA 417 Query 484 GCGAGCCAGACAAATTTATTTTAAAGAATGGGATGCTCACCGTGATGGTTACCCCGATCG 543 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 418 GCGAGCCAGACAAATTTATTTTAAAGAATGGGATACTCACCGTGATGGTTACCCCGATGG 477 Query 544 CAGTAATATTTTCAAGCTCCGAGATTTCATCAGGAGTGTTTATGTGGACAAAAGATACAG 603 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 478 CAGTAATATTTTCAAGCTCCGAGATTTCATCAGGAATGTTTATGTGGAAAAAAGATACAG 537 Query 604 TAGCAGTGACAAGATCTCACAGCAGAAATCGGATGTCACAGAAGATTACAGGGAAAGTAA 663 ||||| || |||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 538 TAGCAATGGCAAGCTCTCACAGCAGAAATCGGATGTCATAGAAGATTACAGGGAAAGTAA 597 Query 664 GAAGACCAGTGCACATGTTCTCGGATCTAGAAGTTTACACTCTGTGGATAAATCTGACAT 723 |||| |||||||| || |||| ||||||||||||||||||||||||||||||||||| || Sbjct 598 GAAGGCCAGTGCAAATTTTCTTGGATCTAGAAGTTTACACTCTGTGGATAAATCTGAAAT 657 Query 724 CGAAAGATCTAGTGCTGCTGGGAGGAGTGGAAGTGAATCTCT-AAGGTTTTATTTTGATG 782 |||||||| |||||||| |||||||||||||||||||||||| || |||||||||||||| Sbjct 658 CGAAAGATATAGTGCTGTTGGGAGGAGTGGAAGTGAATCTCTCAA-GTTTTATTTTGATG 716 Query 783 ACAAGAACCATAAACAACAACATGTTACGCATAATCCAAGGTCTAGAGGTTTACCAAAGA 842 |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 717 ACAAGAACCATAAACAACAATATGTTACACATAATCCAAGGTCTAGAGGTTTACCAAAGA 776 Query 843 GTCCTATTCGCTTTGAGATAGTCGATGATAGGTTTAGAGACGATGGGAGTGTTAAGAGAT 902 |||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 777 GTCCTATTCGGTTTGAGATAGTCGATGATAGGTTTAGAGACGATGGAACTGTTAAGAGAT 836 Query 903 ATGATGCACGTAAA-GATTCAAGAGGAAGCTCCAAATCACTTGACCTCTCAAGTAACAAA 961 |||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 837 ATGATGCACG-AAAGGAGTCAAGAGGAAGCTCCAAATCACTTGACCTCTCAAGTAACAAA 895 Query 962 GACATGCCAAGCTTTCCCATTGTACGCCATACCAGCGAACTCAATATTGTAAAAGTTGAG 1021 |||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||| Sbjct 896 GACATGCCAAGCTTTCCCATTGTACGTCATACCAGCGAACTCAATGTTGTAAAATTTGAA 955 Query 1022 AAAAAGAAGGATCCAGTGAATAATCAGATGACTGCATCATCTGAGAAAATGGAAATTCCT 1081 |||||||||||||||||||||| |||| ||||||||||||||||||||||||| | |||| Sbjct 956 AAAAAGAAGGATCCAGTGAATACTCAGGTGACTGCATCATCTGAGAAAATGGAGAGTCCT 1015 Query 1082 AGAAGTTTAATTGATGATG-T--ACCAGTTTCAGAACTATCTGATGAAGGCATTATTAAG 1138 ||||||||||||||||||| | |||||||||||||| |||||||||| |||||| |||| Sbjct 1016 AGAAGTTTAATTGATGATGATGTACCAGTTTCAGAACCATCTGATGAAAGCATTAGTAAG 1075 Query 1139 AATTCAAGTGAAATTCCTGCATCTCTAAAGACCACTGAGGAGCCAGCTCCTAATTCTTTG 1198 | |||||||| |||| | ||||||||||||||| ||||||||||||||||||||||||| Sbjct 1076 AGTTCAAGTGCAATTATTACATCTCTAAAGACCATTGAGGAGCCAGCTCCTAATTCTTTG 1135 Query 1199 GAAGCTTTGTTGTTTGGATCCTCTGTTCCTTCTGTTGTCCCTGGAACAAACAACTATGAA 1258 |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||| Sbjct 1136 GAAGCTTTGTTGTTTGGACCCTCTGTTCTTTCTGTTGTCCCTGGAACAAACAACTCTGAA 1195 Query 1259 CTATGGAACACAAGTGATATTTCCTCTACTGAAAACTATACCGCAGTTAACCTCGGGACC 1318 ||||||||||||||||||||||| ||||| || || |||||||||| |||||||||||| Sbjct 1196 CTATGGAACACAAGTGATATTTCTTCTACAGACAATTATACCGCAGCTAACCTCGGGACT 1255 Query 1319 CAGACAATGCCAGGAATACCAGACAGTGTTACCTCTTTTGCCACATCACCAACAACTGCA 1378 ||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||| | Sbjct 1256 CAGACAATGCCAGGAATACCAGATAATGTTACCTCTTTTGTCACATCACCAACAACTGTA 1315 Query 1379 CATGCTCATTCCGGTTCTTCAGGTCCAGTGGTACCTGTTGCTCCTGATAACTTAAATACA 1438 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1316 CATGCTCATGCCGGTTCTTCAGGTCCTGTGGTACCTGTTGCTCCTGATAACTTAAATACA 1375 Query 1439 AAAGAGACGGCTACAC----T-T-GC---AAATAACCAGGGACCATCAGATTTCTCTATG 1489 |||||||||||||||| | | || ||||||||||||||||||||||||||||||| Sbjct 1376 AAAGAGACGGCTACACCAAGTGTAGCTGCAAATAACCAGGGACCATCAGATTTCTCTATG 1435 Query 1490 GAACAGACAACACTGGCTATCACAGATTATGCTCATGGAGTTGGATCTGAGCATCATCAA 1549 |||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 1436 GAACAGTCAACACTGGCTATCACAAATTATGCTCATGGAGTTGGATCTGAGCAAGATCAT 1495 Query 1550 G-ATGATGAGACACAATCTAGCATAAGAAAGGCGCTTCCTGAGGACCTTTTCACTGGAGG 1608 | ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 1496 CCA-GATGAGACACAATCTAGCATAAGAAAGGCGCTTCCCGAGGACCTTTTCTCTGGAGG 1554 Query 1609 CTTCTCATTTGCCCCTCAGCAAGTTCATGGTCAACATCATGGCATGGGATATGGCATGCA 1668 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 1555 CTTCTCATTTGCCCCCCAGCAAGTTCATGGTCAACATCATGGCATGGGATATGGCATGGA 1614 Query 1669 ATATTATCAATATCCTGTGCAGGCTATGGGAGCCTTAACATATACAGCAAAAGCAGCAAA 1728 |||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 1615 ATATTATCAATATCCTATGCAGGCTATGGGAGCCATAACATATACAGCAAAACCAGCAAA 1674 Query 1729 TCCCTTTGATCTTAGCTATGATGATACAGCTCCAAACCAAACACCACAATTTCCTACTAT 1788 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1675 TCCCTTTGATCTTAGCTATGATGATACAGCTCCAAACCAAACACCACAATTTCCTTCTAT 1734 Query 1789 GGCATATGTGCAAGGAGGAGGCTTACCTCACGTGTCATCTCCAATAGGGTATTCAGATTC 1848 ||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| Sbjct 1735 GGCATATGTGCAAGGAGGAGGCTTACCACACGTGTCAGCTCCGATAGGGTATTCAGATTC 1794 Query 1849 TTCAAGTCCAGCTGCAGATTCCATTGGACTGATGACCTCTCAGTCACCTTTTCATGCAAC 1908 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1795 TTCAAGTCCAGCTGCAGATTCCATTGGACTGATGACCTCTCAGTCACCTTTTCATACAAC 1854 Query 1909 CGCTTTATCCCCAAACTCTCCAGCTCTTGCATCCCATCTTTCCCCTGGTGCACTAATGGG 1968 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1855 CGCTTTATCCCCAAACTCTCCAGCTCTTGCATCCAATCTTTCCCCTGGTGCACTAATGGG 1914 Query 1969 GCAGCAATCACAGGTGAATATGTCCCCATCATTCAGGCAAGAGTATAGTGGTCTTGGTAC 2028 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1915 GCAGCAATCACAGGTGAATATGTCCCCATCATTCAGGCAAGAGTATAGTGGCCTCGGTAC 1974 Query 2029 AGAAGGAAATACGTTCAACGGAGTACATACATTTCATCAAGCAAACAATGGATATCCTTC 2088 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1975 TGAAGGAAATACGTTCAACGGAGCACATACATTTCATCAAGCAAACAATGGATATCCTTG 2034 Query 2089 TGCAAACCCAAATGCTTATGTATCCAGAGGAAATCCCTTTGAATGAGA 2136 ||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 2035 TGCAAACCCAAATGCTTATATTTCCAGAGGAAATCCCTTTGAATGAGA 2082 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92825927065 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5