BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32630.2
Length=2463
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491451 jgi|Araly1|491451|fgenesh2_kg.7__884__AT4G32630.2 3112 0.0
> Ahg491451 jgi|Araly1|491451|fgenesh2_kg.7__884__AT4G32630.2
Length=2200
Score = 3112 bits (1685), Expect = 0.0
Identities = 1959/2088 (94%), Gaps = 31/2088 (1%)
Strand=Plus/Plus
Query 74 ttcgactggtt-c-c-tcttctttttgtaag---gtttttctcttctct-tttttttttt 126
||||||||||| | | |||||| |||||||| |||||||||||||| | ||||||||
Sbjct 1 TTCGACTGGTTCCTCATCTTCTCTTTGTAAGTTTTTTTTTCTCTTCTCTCTCTTTTTTTT 60
Query 127 GTT-TGTTTGAACATTTTAGAGCATC-AGGGGCTTGAAGCTTAAAATTTCCCATGTTTCT 184
|| | ||||||||||||||| || | | |||||| | |||| |||| || |||||||||
Sbjct 61 CTTCT-TTTGAACATTTTAGAACA-CAAAGGGCTTCACGCTTGAAATCTCTCATGTTTCT 118
Query 185 CGCATGTAACGATTTCTCATTTGAGATATTGTTTTTCTTCATGAGAGAGGCATTTTTCCA 244
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 119 CGCATGTAACGATTTCTCATTTGAGATATTGTTTTTCTTGATGAGAGAGGCATTTTTCCA 178
Query 245 AGAATGAAGGAAGACGAGCGAACCGAAAAGGCTATCCGGAGTTTATTGAAGCTTCCTGAG 304
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AGAATGAAGGAAGGCGAGCGAACCGAAAAGGCTATCCGGAGTTTATTGAAGCTTCCTGAG 238
Query 305 AACCGGA-GATGCATCAATTGCAATAGTCTGGGTCCACAATATGTATGCTCAACTTTCTG 363
|||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 239 AACC-GACGATGCATCAATTGCAATAGTCTGGGTCCACAATATGTCTGCTCAACTTTCTG 297
Query 364 GACTTTTGTCTGCGTTAACTGCAGCGGAATCCACCGAGAATTCACACATCGTGTTAAATC 423
||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 298 GACTTTTGTCTGCATAAACTGCAGCGGAATCCATCGAGAATTCACACATCGTGTTAAATC 357
Query 424 TGTATCAATGGCCAAGTTCACAGCAGACGAAGTTAGTGCACTTCGCGCAGGAGGAAACGA 483
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 358 TGTATCAATGGCCAAGTTCACAGCAGAAGAAGTTAGTGCGCTTCGCGCAGGAGGAAACGA 417
Query 484 GCGAGCCAGACAAATTTATTTTAAAGAATGGGATGCTCACCGTGATGGTTACCCCGATCG 543
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 418 GCGAGCCAGACAAATTTATTTTAAAGAATGGGATACTCACCGTGATGGTTACCCCGATGG 477
Query 544 CAGTAATATTTTCAAGCTCCGAGATTTCATCAGGAGTGTTTATGTGGACAAAAGATACAG 603
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 478 CAGTAATATTTTCAAGCTCCGAGATTTCATCAGGAATGTTTATGTGGAAAAAAGATACAG 537
Query 604 TAGCAGTGACAAGATCTCACAGCAGAAATCGGATGTCACAGAAGATTACAGGGAAAGTAA 663
||||| || |||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 538 TAGCAATGGCAAGCTCTCACAGCAGAAATCGGATGTCATAGAAGATTACAGGGAAAGTAA 597
Query 664 GAAGACCAGTGCACATGTTCTCGGATCTAGAAGTTTACACTCTGTGGATAAATCTGACAT 723
|||| |||||||| || |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 598 GAAGGCCAGTGCAAATTTTCTTGGATCTAGAAGTTTACACTCTGTGGATAAATCTGAAAT 657
Query 724 CGAAAGATCTAGTGCTGCTGGGAGGAGTGGAAGTGAATCTCT-AAGGTTTTATTTTGATG 782
|||||||| |||||||| |||||||||||||||||||||||| || ||||||||||||||
Sbjct 658 CGAAAGATATAGTGCTGTTGGGAGGAGTGGAAGTGAATCTCTCAA-GTTTTATTTTGATG 716
Query 783 ACAAGAACCATAAACAACAACATGTTACGCATAATCCAAGGTCTAGAGGTTTACCAAAGA 842
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 717 ACAAGAACCATAAACAACAATATGTTACACATAATCCAAGGTCTAGAGGTTTACCAAAGA 776
Query 843 GTCCTATTCGCTTTGAGATAGTCGATGATAGGTTTAGAGACGATGGGAGTGTTAAGAGAT 902
|||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 777 GTCCTATTCGGTTTGAGATAGTCGATGATAGGTTTAGAGACGATGGAACTGTTAAGAGAT 836
Query 903 ATGATGCACGTAAA-GATTCAAGAGGAAGCTCCAAATCACTTGACCTCTCAAGTAACAAA 961
|||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ATGATGCACG-AAAGGAGTCAAGAGGAAGCTCCAAATCACTTGACCTCTCAAGTAACAAA 895
Query 962 GACATGCCAAGCTTTCCCATTGTACGCCATACCAGCGAACTCAATATTGTAAAAGTTGAG 1021
|||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||
Sbjct 896 GACATGCCAAGCTTTCCCATTGTACGTCATACCAGCGAACTCAATGTTGTAAAATTTGAA 955
Query 1022 AAAAAGAAGGATCCAGTGAATAATCAGATGACTGCATCATCTGAGAAAATGGAAATTCCT 1081
|||||||||||||||||||||| |||| ||||||||||||||||||||||||| | ||||
Sbjct 956 AAAAAGAAGGATCCAGTGAATACTCAGGTGACTGCATCATCTGAGAAAATGGAGAGTCCT 1015
Query 1082 AGAAGTTTAATTGATGATG-T--ACCAGTTTCAGAACTATCTGATGAAGGCATTATTAAG 1138
||||||||||||||||||| | |||||||||||||| |||||||||| |||||| ||||
Sbjct 1016 AGAAGTTTAATTGATGATGATGTACCAGTTTCAGAACCATCTGATGAAAGCATTAGTAAG 1075
Query 1139 AATTCAAGTGAAATTCCTGCATCTCTAAAGACCACTGAGGAGCCAGCTCCTAATTCTTTG 1198
| |||||||| |||| | ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1076 AGTTCAAGTGCAATTATTACATCTCTAAAGACCATTGAGGAGCCAGCTCCTAATTCTTTG 1135
Query 1199 GAAGCTTTGTTGTTTGGATCCTCTGTTCCTTCTGTTGTCCCTGGAACAAACAACTATGAA 1258
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1136 GAAGCTTTGTTGTTTGGACCCTCTGTTCTTTCTGTTGTCCCTGGAACAAACAACTCTGAA 1195
Query 1259 CTATGGAACACAAGTGATATTTCCTCTACTGAAAACTATACCGCAGTTAACCTCGGGACC 1318
||||||||||||||||||||||| ||||| || || |||||||||| ||||||||||||
Sbjct 1196 CTATGGAACACAAGTGATATTTCTTCTACAGACAATTATACCGCAGCTAACCTCGGGACT 1255
Query 1319 CAGACAATGCCAGGAATACCAGACAGTGTTACCTCTTTTGCCACATCACCAACAACTGCA 1378
||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||| |
Sbjct 1256 CAGACAATGCCAGGAATACCAGATAATGTTACCTCTTTTGTCACATCACCAACAACTGTA 1315
Query 1379 CATGCTCATTCCGGTTCTTCAGGTCCAGTGGTACCTGTTGCTCCTGATAACTTAAATACA 1438
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1316 CATGCTCATGCCGGTTCTTCAGGTCCTGTGGTACCTGTTGCTCCTGATAACTTAAATACA 1375
Query 1439 AAAGAGACGGCTACAC----T-T-GC---AAATAACCAGGGACCATCAGATTTCTCTATG 1489
|||||||||||||||| | | || |||||||||||||||||||||||||||||||
Sbjct 1376 AAAGAGACGGCTACACCAAGTGTAGCTGCAAATAACCAGGGACCATCAGATTTCTCTATG 1435
Query 1490 GAACAGACAACACTGGCTATCACAGATTATGCTCATGGAGTTGGATCTGAGCATCATCAA 1549
|||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1436 GAACAGTCAACACTGGCTATCACAAATTATGCTCATGGAGTTGGATCTGAGCAAGATCAT 1495
Query 1550 G-ATGATGAGACACAATCTAGCATAAGAAAGGCGCTTCCTGAGGACCTTTTCACTGGAGG 1608
| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1496 CCA-GATGAGACACAATCTAGCATAAGAAAGGCGCTTCCCGAGGACCTTTTCTCTGGAGG 1554
Query 1609 CTTCTCATTTGCCCCTCAGCAAGTTCATGGTCAACATCATGGCATGGGATATGGCATGCA 1668
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1555 CTTCTCATTTGCCCCCCAGCAAGTTCATGGTCAACATCATGGCATGGGATATGGCATGGA 1614
Query 1669 ATATTATCAATATCCTGTGCAGGCTATGGGAGCCTTAACATATACAGCAAAAGCAGCAAA 1728
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1615 ATATTATCAATATCCTATGCAGGCTATGGGAGCCATAACATATACAGCAAAACCAGCAAA 1674
Query 1729 TCCCTTTGATCTTAGCTATGATGATACAGCTCCAAACCAAACACCACAATTTCCTACTAT 1788
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1675 TCCCTTTGATCTTAGCTATGATGATACAGCTCCAAACCAAACACCACAATTTCCTTCTAT 1734
Query 1789 GGCATATGTGCAAGGAGGAGGCTTACCTCACGTGTCATCTCCAATAGGGTATTCAGATTC 1848
||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||
Sbjct 1735 GGCATATGTGCAAGGAGGAGGCTTACCACACGTGTCAGCTCCGATAGGGTATTCAGATTC 1794
Query 1849 TTCAAGTCCAGCTGCAGATTCCATTGGACTGATGACCTCTCAGTCACCTTTTCATGCAAC 1908
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1795 TTCAAGTCCAGCTGCAGATTCCATTGGACTGATGACCTCTCAGTCACCTTTTCATACAAC 1854
Query 1909 CGCTTTATCCCCAAACTCTCCAGCTCTTGCATCCCATCTTTCCCCTGGTGCACTAATGGG 1968
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1855 CGCTTTATCCCCAAACTCTCCAGCTCTTGCATCCAATCTTTCCCCTGGTGCACTAATGGG 1914
Query 1969 GCAGCAATCACAGGTGAATATGTCCCCATCATTCAGGCAAGAGTATAGTGGTCTTGGTAC 2028
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1915 GCAGCAATCACAGGTGAATATGTCCCCATCATTCAGGCAAGAGTATAGTGGCCTCGGTAC 1974
Query 2029 AGAAGGAAATACGTTCAACGGAGTACATACATTTCATCAAGCAAACAATGGATATCCTTC 2088
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1975 TGAAGGAAATACGTTCAACGGAGCACATACATTTCATCAAGCAAACAATGGATATCCTTG 2034
Query 2089 TGCAAACCCAAATGCTTATGTATCCAGAGGAAATCCCTTTGAATGAGA 2136
||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 2035 TGCAAACCCAAATGCTTATATTTCCAGAGGAAATCCCTTTGAATGAGA 2082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92825927065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5