BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32650.1
Length=2197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491447 jgi|Araly1|491447|fgenesh2_kg.7__880__AT4G32650.1 3024 0.0
> Ahg491447 jgi|Araly1|491447|fgenesh2_kg.7__880__AT4G32650.1
Length=2183
Score = 3024 bits (1637), Expect = 0.0
Identities = 2025/2208 (92%), Gaps = 44/2208 (2%)
Strand=Plus/Plus
Query 6 ATCAAGCTTgaagaagagag-agaagaa-gaagaaggaaaaaagaaTGTCTACGACGACT 63
||||||||||||| |||||| ||||||| ||| || ||||||||||||| |||||||||
Sbjct 1 ATCAAGCTTGAAGGAGAGAGAAGAAGAAGGAA-AAAAAAAAAAGAATGTCGACGACGACT 59
Query 64 ACTGAGGCGAGATCACCGTTGCCGTTGTTGTTGAGAAGAGGAAGGTCTTCGACGGCGTTA 123
||||||||||||||||| | || |||||||||| |||||||||||||||||||| | |
Sbjct 60 TCTGAGGCGAGATCACCGCTACCTTTGTTGTTGAAAAGAGGAAGGTCTTCGACGG-G--A 116
Query 124 TCGGCGTCGACGGCGGAAGCAAGATCGCCGTTATCGATACTGCAGTTCAGAAGAAGATCG 183
| | ||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 117 ACATCAACGACGGCGGAAGCAAGATCGCCGTTATCGGTGCTGCAGTTCAGAAGAAGATCG 176
Query 184 AGCAAAGATGTGAGGAACATAACGTCAGTTTCGAGCAGTCTCTTGCCTGCTTTTGGGACT 243
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 177 AGCAAAGATGTGAGGAACATAACGTCAGTTTCGAGCAGTCTCTTGCCTGCGTTTGGGACT 236
Query 244 TTCATCGAAGATGATAATCCTTCTTCCAAACCTTTCATCGTTCTTCACTTTGATCGTCGT 303
||||||| || |||| | ||||||||||||||| |||||||||||||| ||||||||||
Sbjct 237 GTCATCGAGGACGATAGTTCTTCTTCCAAACCTTACATCGTTCTTCACTATGATCGTCGT 296
Query 304 TACAGGTTGTGGGAATTGTTTTTGGTGATATTGGTTGGGT-ATTCGGCGTGGGCATCTTT 362
|||||||||||||||||||||||||||||| |||| |||| |||| |||||||||||| |
Sbjct 297 TACAGGTTGTGGGAATTGTTTTTGGTGATACTGGT-GGGTTATTCAGCGTGGGCATCTCT 355
Query 363 GTTCGAGTTGGCTTTCGA-GAAAGCTGCCGAAGGAGCGTTATTGACCATTGATCTCGTCG 421
||| ||||||||||| | || ||| || |||||||| ||| || || ||||||||||||
Sbjct 356 GTTTGAGTTGGCTTTT-ATGAGAGCAGCTGAAGGAGCTTTAATGGCCGTTGATCTCGTCG 414
Query 422 TTGACTTCTTCTTCGCCGTTGATATCATCCTCACCTTTTTT-GTTTCCTACTTGGATAA- 479
||||||| ||||| ||| ||||||| |||||||| |||||| |||||||||||||||||
Sbjct 415 TTGACTTTTTCTTTGCCCTTGATATTATCCTCAC-TTTTTTCGTTTCCTACTTGGATAAG 473
Query 480 TACTACTTACCTCAAT-GTC-ACCGACCACAAGCTCATCGCCAAACGGTACTTGAAGAGC 537
| || ||||||| | | || || |||||||||||||||||||||||||| |||||||||
Sbjct 474 T-CTTCTTACCT-AGTTGTTGAC-GACCACAAGCTCATCGCCAAACGGTATTTGAAGAGC 530
Query 538 GTGGCTTTTGTGATGGACGTAGCATCAACGTTACCCATTCAATTCATTTATAAAACTATT 597
||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||
Sbjct 531 GTGGCTTTTGTGATGGACGTAGCATCAACGTTACCGATTCAGTTCATTTATAAAGCTATT 590
Query 598 ACCGGAGATGTCGGACGAGGCCAAGCTTTCGGCTTCCTTAATTTACTCCGCCTCTGGCGT 657
|||||| || ||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 591 ACCGGAAATATCGGACGCGGCCAAGCTTTCGGCTTCCTTAATTTGCTTCGCCTCTGGCGT 650
Query 658 CTCCGTCGTGTAGCCGAACTCTTTAAAAGACTAGAGAAAGACGCACATTTCAACTATTTC 717
||||||||||||||||||||||| ||||| |||||||||||| ||| ||| ||||| |||
Sbjct 651 CTCCGTCGTGTAGCCGAACTCTTCAAAAGGCTAGAGAAAGACCCACGTTTTAACTACTTC 710
Query 718 GTGATCCGAGTCATCAAACTTCTATGTGTAACGATATTTTGGATACATTTGGCGGGTTGC 777
| ||| || |||| ||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 711 CTCATCAGACTCATTAAACTACTTTGTGTAACGATATTTTGGATACATATGGCGGGTTGC 770
Query 778 ATTTTATACTGGATAGCCTACCATTATCCAAGGCCTACGGATACATGGATAGGATCGCAA 837
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 771 ATTTTATACTGGATAGCCTACCATTATCCAAGGCCTACAGAAACATGGATAGGATCACAA 830
Query 838 GTTGAGGATTTTAAGGAAAGAAGTGTATGGTTAGGGTACACTTACTCAATGTACTGGTCC 897
||||||||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||
Sbjct 831 GTTGAGGATTTCAAGGAGAGAAGTATATGGTTAGGCTACACTTACTCAATGTACTGGTCC 890
Query 898 ATTGTCACACTCACTACCGTGGGTTACGGTGATTTGCATGCAGTTAATAGCCGTGAGAAG 957
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 891 ATTGTCACACTCACTACCGTGGGTTACGGTGATCTGCATGCCGTTAATAGCCGTGAGAAG 950
Query 958 ACATTCAACATGTTCTACATGCTTTTCAACATTGGCCTCACTTCTTATATCATCGGTATC 1017
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
Sbjct 951 ACATTCAACATGTTCTATATGCTTTTCAACATTGGCCTCACGGCTTATATCATCGGTAAC 1010
Query 1018 ATGACCAATCTAGTTGTCCATGGCGCTCTTCGTACATTCGCCATGAGGAGTGCGATCAAT 1077
||||||||||| ||||||||||| |||||||||||||| ||||||| ||||||||||||
Sbjct 1011 ATGACCAATCTGGTTGTCCATGGAGCTCTTCGTACATTTTCCATGAGAAGTGCGATCAAT 1070
Query 1078 GATATATTGCGATACACAAGCAAGAACAGGTTACCGGATACAATGAGGGAACAGATGCTT 1137
| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1071 CAGATATTGCGGTACACAAGCAAGAACAGGTTACCAGATACAATGAGGGAGCAGATGCTT 1130
Query 1138 GCACATATGCAGCTCAAGTTCAAGACCGCGGAGTTAAGGCAAGAAGAGGTTCTTCAAGAC 1197
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1131 GCACATATGCAGCTCAAGTTCAAGACCGCAGAGTTAAGGCAAGAAGAGGTTCTTCAAGAC 1190
Query 1198 TTACCTAAGGCCATAAGATCAAGCATTAACCAACATCTATTCCGCTCCATCATCGAAGAA 1257
||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||
Sbjct 1191 TTACCTAAGGCCATAAGATCAAGCATTAATCAACATCTATTCCGCTCTGTCATCGTGGAG 1250
Query 1258 GCTTATCTTTTTAAAGGATTCCCCGAA-GGCCTCCTCGTCCAGCTGGTTTCGCAAATACA 1316
||||||||||| |||||||||||| || |||||| |||||||||||||||| |||||| |
Sbjct 1251 GCTTATCTTTTCAAAGGATTCCCC-AATGGCCTCATCGTCCAGCTGGTTTCCCAAATAAA 1309
Query 1317 AGCAGAATATTTTCCGCCGAAAATGGAGATAATCTTGCAGAATGAGATTCCAACGGATTT 1376
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1310 AGCAGAGTATTTTCCGCCGAAAATGGAGATAATATTGCAGAATGAGATTCCAACGGATTT 1369
Query 1377 CTACGTAATTGTATCTGGAGGAGTGGATATAATTGCTTCCAAGGGTGTGAGTGAACAGGT 1436
|||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1370 CTACATAATTGTATCTGGAGGAGTGGATATAGTTGCATCCAAGGGTGTGAGTGAACAGGT 1429
Query 1437 ATTAGCGAAGTTAGGTCCCGGAAGTATGGCAGGAGAGATAGGAGTAGTGTTCAACATTCC 1496
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1430 ATTGGCCAAGTTAGGTCCCGGAAGTATGGCAGGGGAGATAGGAGTAGTGTTCAACATTCC 1489
Query 1497 TCAGCCTTTCACAGTGAGGACACGTCGACTTTCACAAGTTATCAGAATTGGTCATCATAA 1556
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 TCAGCCTTTCACTGTGAGGACACGTCGACTTTCACAAGTTATCAGAATTGGTCATCATAA 1549
Query 1557 GTTCAAAGAAATGGT-GCAGTCTGATAATGACGTCGACGCCAAAATGATCATTGCCAATT 1615
||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1550 GTTCAAAGAAATGGTTG-AGTCTGATAATGACGTCGACGCCAAAATGATCATCACCAATT 1608
Query 1616 TCATGACAT-ATCTTAAGGGATTGAATGATGAGTTaaaaaaaGAAATTCCTTTTCTTAGA 1674
|||||| || ||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1609 TCATGA-ATTATCTTAAGGGATTGAATGATGAGTTGAAGAAAGAAATTCCTTTTCTTAGA 1667
Query 1675 GATTTATTAGATGACGCAGATGCTCAGGTTCAGGAAACAGTTCAGTCAGAGGAAACACCA 1734
|||||| ||| |||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1668 GATTTACTAGCTGACGCAGATGCTCAGGTTCAGGAAACAGTTCAGACAGAAGAAACACCA 1727
Query 1735 CAAAGTAACGATGAGGAAATAGTTACGGTCTCAAGACATGAAAATGGACAGATagaagag 1794
||||||||| ||||||| |||||||||||||||||| ||||| ||| ||||| |||||||
Sbjct 1728 CAAAGTAACAATGAGGAGATAGTTACGGTCTCAAGAAATGAATATGAACAGAAAGAAGAG 1787
Query 1795 agaagaagagagGGAGTTCCAAAAAGAGTGATAATTCATGGACAAGCTCCTCCTAATCAA 1854
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1788 AGAAGAAGTGAGGGAGTTCCTAAAAGAGTGATAATTCATGGACAAGCTCCTCCTAATCAA 1847
Query 1855 GATAACAAAAACAATGGTGATTCCAACGGTAGACTTATCATTTTACCTGACTCTATCCAA 1914
|||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 1848 GATAACAACAACAATGGTGATTCCAACGGTAGACTTATCATTTTGCCTGATTCCATCCAA 1907
Query 1915 CTTCTATTCGACTTAGCTGAGAAGAAGTTGGGGAAACGAGGAAGCACGATTGCAATGGCA 1974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1908 CTTCTATTCGACTTAGCTGAGAAGAAGTTGGGGAAACGAGGAAGCACGATTGCAATGGCA 1967
Query 1975 GATGGTGCACATGTTGAACAAATTGATGCTCTTCGAGAAAACGATCATTTATATATTTTC 2034
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 GACGGTGCACATGTTGAACAAATTGATGCTCTTCGAGAAAACGATCATTTATATATTTTC 2027
Query 2035 TAATTCGTTTATAAATATATATATTCACAATTA-T---CACTTCCCACACAAA-TAATGA 2089
||| | || ||| |||||||||||||| | ||| ||||||||||| ||| |
Sbjct 2028 TAA-------A-AA-TATCTATATTCACAATTAATTATCACCTCCCACACAAAATAA--A 2076
Query 2090 TACaaaaaaa--aCTATATTTTTGTTAGCGTAAG-GTGCTTATGAAAAGATGCAAAGTCA 2146
| ||||||| ||||||||||||| ||||||| || |||||||||||| ||||||||
Sbjct 2077 -AGAAAAAAACTACTATATTTTTGTCAGCGTAAACGTTCTTATGAAAAGAAGCAAAGTCG 2135
Query 2147 GATATATGAAAATATAAGGTGAAGATCGAATTCCCAATTCCACTATTA 2194
|||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2136 GATATATGAAAATATAAGGTGAAGATCGAATTCCCAATTCCATTATTA 2183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82693921895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5