BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32660.1
Length=1678
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491444 jgi|Araly1|491444|fgenesh2_kg.7__877__AT4G32660.1 2399 0.0
> Ahg491444 jgi|Araly1|491444|fgenesh2_kg.7__877__AT4G32660.1
Length=1520
Score = 2399 bits (1299), Expect = 0.0
Identities = 1434/1497 (96%), Gaps = 17/1497 (1%)
Strand=Plus/Plus
Query 166 CATCTACGTAAAGAGTTTCTGGTAGAAATT-TTCCCTCTTTTAGCTGCAGATTGGCATCA 224
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 38 CATCTACGTAAAGAGTTTCTGGTAG-AATTATTCCCTCTTTTAGCTGCAGATTGGCATCG 96
Query 225 GATTCCGTTCTGGATGTGTCGGTGATCGATTTTCCGCGTCGGTGATGATAGCTAACGGAT 284
|||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 97 GATTCCGTTCTGGATGCGTCGGTGATCGATTCTCCGCGTCGGTGATGATAGCTTACGGAT 156
Query 285 TCGAGAGTATGGATAAAGAACGAGTCAGGAAACGTCCTCGTATGACCTGGGACGAGGCCC 344
|||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 157 TCGAGAATATGGATAAAGAACGACTCAGAAAACGTCCTCGTATGACCTGGGACGAGGCCC 216
Query 345 CAGCTGAACCAGAGGCTAAAAGGGCTGTGATTAAAGGACATGGAAGCGATGGGAGGATTT 404
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 CGGCTGAACCAGAGGCTAAAAGGGCTGTGATTAAAGGACATGGAAGCGATGGGAGGATTT 276
Query 405 TGTCACCACCATTAAGGGACGATGATCGTGATGGTCATTATGTTTTCAGTTTGAGGGACA 464
||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 277 TGTCACCACCATTGAGGGAGGATGATCGTGATGGTCATTATGTCTTCAGTTTGAGGGACA 336
Query 465 ATCTCACTCCTAGATATAAAATACTTAGCAAGATGGGTGAAGGCACATTTGGTCGGGTTT 524
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 337 ATCTCACTCCTAGATATAAAATACTAAGCAAGATGGGTGAAGGCACATTTGGTCGGGTTT 396
Query 525 TGGAATGTTGGGATCGTGATACAAAAGAATATGTGGCAATAAAGATAATTCGAAGCATTA 584
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 397 TGGAATGTTGGGATCGTGATACAAAAGAATATGTGGCAATAAAGATTATTCGAAGCATTA 456
Query 585 AGAAATACCGGGATGCAGCAATGATTGAAATTGATGTACTTCAGAAACTTGTTAAGAGTG 644
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 457 AGAAATACCGGGATGCAGCAATGATTGAAATTGATGTACTTCAAAAACTTGTTCAGAGTG 516
Query 645 ATAAAGGCCGCACACGCTGTGTACAGATGAAGAACTGGTTTGATTACCGAAATCATATTT 704
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 517 ATAAAGGCCGCACACGCTGTGTACAGATGAAGGACTGGTTTGATTACCGAAATCATATTT 576
Query 705 GCATTGTGTTCGAGAAGCTTGGGCCAAGTTTGTTTGACTTTCTAAAGAGAAATAAATACT 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 GCATTGTGTTCGAGAAGCTTGGGCCAAGTTTGTTTGACTTTCTAAAGAGAAATAAATACT 636
Query 765 CCGCATTTCCTCTGGCCCTTGTTCGGGATTTTGGATGCCAGCTTTTGGAATCTGTAGCAT 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 CCGCATTTCCTCTGGCCCTTGTTCGGGATTTTGGATGCCAGCTTTTGGAATCTGTAGCAT 696
Query 825 ATATGCACGAGTTACAGTTAGTTCACACCGACCTCAAGCCTGAGAACATTCTGTTGGTGT 884
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 697 ATATGCACGAGTTACAGTTAGTTCACACCGACCTCAAGCCTGAGAACATTCTTTTGGTGT 756
Query 885 CTTCTGAAAATGTAAAGCTTCCTGACAATAAGAGGAGTGCTGCAAATGAGACACATTTCA 944
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||
Sbjct 757 CTTCTGAAAATGTAAATCTTCCTTACAATAAGAGGAGTGCTGCAAATGAGACACATGTCA 816
Query 945 GGTGCTTACCAAAGTCAAGCGCCATTAAACTGATTGATTTTGGCAGTACTGTTTGTGATA 1004
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 817 GGTGCTTACCAAAGTCGAGCGCTATTAAACTGATTGATTTTGGCAGTACTGTTTGTGATA 876
Query 1005 ACCGGATTCATCACTCCATTGTCCAAACAAGACATTACAGATCCCCCGAGGTCATTTTAG 1064
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 877 ACCGGATTCATCACTCTGTTGTCCAAACAAGGCATTACAGATCCCCCGAGGTCATTTTAG 936
Query 1065 GTCTAGGATGGAGTTACCAGTGTGACTTATGGAGTATAGGTTGTATACTATTTGAACTAT 1124
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 937 GTCTAGGATGGAGTTACCAGTGTGACTTATGGAGTATAGGTTGTATACTATATGAACTAT 996
Query 1125 GCACGGGTGAGGCTCTCTTTCAGACGCATGATAACCTAGAACATCTAGCTATGATGGAGA 1184
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 997 GCACGGGTGAGGCTCTCTTTCAGACGCATGATAACTTAGAACATCTAGCTATGATGGAGA 1056
Query 1185 GGGCGCTTGG-ACCTTTACCTGAACATATGACTCGAAAAGCCAGCCGGGGTGCTGAGAAA 1243
|||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 GGGCA-TTGGGACCTTTGCCTGAACATATGACTCGAAAAGCCAGCCGGGGTGCTGAGAAA 1115
Query 1244 TATTTCAGGAGAGGGTGTCGGTTGAATTGGCCAGAAGGAGCCAACTCTAGAGAAAGTATT 1303
|||||||| ||||||||| || | ||||||||||||||||||||||||||||| ||||||
Sbjct 1116 TATTTCAGAAGAGGGTGTAGGCTAAATTGGCCAGAAGGAGCCAACTCTAGAGAGAGTATT 1175
Query 1304 AGGGCTGTAAAAAGACTTGATCGTCTCAAGGATATGGTATCGAAACATGTTGACAACACG 1363
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1176 AGGGCTGTAAAAAGACTTGATCGTCTCAAGGATATGGTATCGAAACATGTTGACAGCACA 1235
Query 1364 AGATCTAGATTTGCAGATCTATTGTATGGTTTATTGGCATATGATCCATCTGAGCGTCTC 1423
||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||
Sbjct 1236 AGATCTAGATTTGCAGATCTATTGTATGGCTTACTGACATATGATCCATCTGAGCGTCTC 1295
Query 1424 ACAGCAAACGAAGCTCTTGACCATCCTTTCTTTAAGAGCTCAAGTTGAGAAGAAGCAAAA 1483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 ACAGCAAACGAAGCTCTTGACCATCCTTTCTTTAAGAGCTCAAGTTGAGAAGAAGCAAAA 1355
Query 1484 TCAGAACCATAAAATGTAGAATTTTACTTGGTAACAAGttttttt-GTTAGATTCCTCTA 1542
||||| | |||||||||||||||||||||||||||||| ||||||||| | |
Sbjct 1356 TCAGA----T-----GTAGAATTTTACTTGGTAACAAGTTTTTTTTGTTAGATTC-T--A 1403
Query 1543 AAGCTCCCGTTCTCAGTAGCACCAAACAGTAGTATTCCTATTTCAGTTACGAGTTTGGCT 1602
|||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1404 AAGCTCCCTTTCTCAGTAGCACCAAACAGTAGTATTCCAATTTCAGTAACGAGTTTGGCT 1463
Query 1603 ACGTTTATTCTGGAAAATACCTCTGTTGTACATTGTGTTGTTGAGAATATAAAACTT 1659
|| |||||||||||||||| ||||||||||||||||||||||||||| | |||||||
Sbjct 1464 ACATTTATTCTGGAAAATAACTCTGTTGTACATTGTGTTGTTGAGAAGAAAAAACTT 1520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62925084740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5