BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32670.1
Length=2945
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491441 jgi|Araly1|491441|fgenesh2_kg.7__874__AT4G32670.1 4335 0.0
> Ahg491441 jgi|Araly1|491441|fgenesh2_kg.7__874__AT4G32670.1
Length=2936
Score = 4335 bits (2347), Expect = 0.0
Identities = 2759/2956 (93%), Gaps = 36/2956 (1%)
Strand=Plus/Plus
Query 1 TTGCCGCTAAAGTGAAAGTGCAGACTG-A-AGAGAAAGAGAGAGATACAATCGAAGTTCC 58
||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 1 TTGCCGCTAAAGTGAAAGTGCAGACAGAAGAGAGAAAGAGAGAGATACAATCGAAGTTCC 60
Query 59 AAGGTTTCTAGTTCCCGG-AAATGGAGATTTCTCCGGCGGAAGACAAACTCGTTGGCTCC 117
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 AAGGTTTCTAGTTCCCGGAAAATGGAGATTTCTCCGGCGGAAGACAAGCTCGTTGGCTCC 120
Query 118 GGCGAAGCTGTTACTACAGAAGAAGTATCAGACATAA-ATAACAAAGCTGTAGACATTTG 176
||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||
Sbjct 121 GGCGAAGCTGTTACTAC---AGAAGTATCAGACATAACA-AACAAAGCTGTAGACATTTG 176
Query 177 TCGGATTTGCCAATCACCGGAGGAACCAGACAATCCGTTGAGACATCCGTGCGCGTGTAG 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 177 TCGGATTTGCCAATCACCGGAGGAACCAGACAATCCGTTGAGACATCCGTGCGCGTGTCG 236
Query 237 AGGCTCTCTCAAGTATATCCACTCAGATTGTCTTTTCCTCTGGCTCAATCGCCGTAAACG 296
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 237 AGGCTCTCTCAAGTATATCCACTCAGATTGTCTTTTTCTCTGGCTCAATCGCCGTAAACG 296
Query 297 CAACCATTGCGAGATTTGCAAACGTAGCTACTCAATTGTTCCGGTTTATTCCGAGAACGC 356
||||||||||||||||||||||| | ||||||||||||| ||| ||||||||||||||||
Sbjct 297 CAACCATTGCGAGATTTGCAAACATTGCTACTCAATTGTGCCGATTTATTCCGAGAACGC 356
Query 357 TCCAGAGAGACTACCATGGCACGAATTCTTGATGGGATTGCTAATGAGAGCATTACGTTT 416
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 357 TCCAGAGAGACTACCATGGCACGAATTCTTAATGGGATTGCTAATGAGAGCATTACGTTT 416
Query 417 CATGAACCTGATTCTTCCTTGGATCTTGATGATGCCTTTCAACGCATACTGCTTTTCTTT 476
|||||||||||| ||||||||| | || ||||| |||||||||||||| |||||||||||
Sbjct 417 CATGAACCTGATGCTTCCTTGGGTTTTCATGATTCCTTTCAACGCATATTGCTTTTCTTT 476
Query 477 TCGTCCTTGGGGCAGGGAAAGTGAGTTTGTGAACCAGACTGTTTTTGAACTGTCCTTGAG 536
||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 477 TCGTCCTTGGGACAGGGAAAGTGTGTTTGTGACCCAGACTGTTTTTGAACTGTCCTTGAA 536
Query 537 ATTTCCTGGTCTGTTTTACACTGCTCAGATAGTGTCTAGTGCCACCGAGATGGTTGTTCA 596
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 537 ATTTCCTGGTCTGTTTTACACTGCTCAGATAGTGTCTAGTACCACCGATATGGTTGTTCA 596
Query 597 AATGGAAA-CGATAAGAGTGCTTTTAAGGAGACACCCCGAGTTCTTGCGTCGTATGATCA 655
|||||||| | ||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 597 AATGGAAATC-ATAAGAGTGCTTTTAAGGAGACACCCCGAGTTCTTACGTCATATGATCA 655
Query 656 TCTTAGAGAATGGTCTTAAAGATAGAGATGTTACTGGAATTGTGCTGCTGTTAGCAAATC 715
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TCTTAGAGAATGGTCTAAAAGATAGAGATGTTACTGGAATTGTGCTGCTGTTAGCAAATC 715
Query 716 ATTTGCAAATTCTGTGTGATTGGTGGCATGATCAGCTCTTACAGTTGCCATTTCTCCATA 775
|||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 716 ATTTACACATTCTGTGTGACTGGTGGCATGATCAGCTCTTACACTTGCCATTTCTCCATA 775
Query 776 TCTTTCAAAGGGGACCTCTTGCACTAGCGTTTGTTCCTCGAAACACGCCCCTTCATCAAT 835
|| |||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 776 TCATTCAGAGGGGACCTCTTGCACTAATGTTTGTTCCTCGAAACACGCCGCTTCATCAAT 835
Query 836 TTGGAGCCATCAGAAGGGTTTTTTCCCTTTTGAGTGACAACACTTTTGCTGTTCTTGCCA 895
||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 836 TTGGAGCTATCAGAAGGTTTTTTTCCCTTTTCAGTGACAACACTTTTGCTGTTCTTGCCA 895
Query 896 TCAACATCTATTGGTCTTTCTTCAGGGTTCTTTTACCATTTTCGATTGGCCGAGTTGTTT 955
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 896 TCAACATCTATTGGTCTTTCTTCAACGTTCTTTTACCATTTTCGATTGGACGAGTTGTCT 955
Query 956 TAGTTCTCCTACGCTGTCTCCCACACGGTTGGATTGCGGAAAATGCATCTGAAATGGCTG 1015
||||||||||||| ||| || ||| |||||||||||| ||||||||||||||| ||||||
Sbjct 956 TAGTTCTCCTACGTTGTTTCTCACTCGGTTGGATTGCAGAAAATGCATCTGAAGTGGCTG 1015
Query 1016 CTGGAGATATGGTTATACGCTCAGTTTTATTGGCTTGCCTTGGAGGAGTCTTTACTATGT 1075
|||||||||||||||||||||||||||||||||||| | ||| | | ||||||||| ||
Sbjct 1016 CTGGAGATATGGTTATACGCTCAGTTTTATTGGCTTTCTTTGCAAGTGTCTTTACTTTGC 1075
Query 1076 CTCGAGACACTTATCTAACAAGCGTCAGAACGTTTTTACCGTCAGTTAAGGATACATTCA 1135
||||| |||| ||||||||||| |||||| || || |||||||||||||||||||||||
Sbjct 1076 CTCGAAACACGTATCTAACAAGAGTCAGATGGTCTTCACCGTCAGTTAAGGATACATTCA 1135
Query 1136 TCTTGTCTTTTAAACTCGGTGTTCTGCCTTGGTTACTTGGTTGCTGGCTACATTTCTGCA 1195
|||||| ||||||||||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1136 TCTTGTGTTTTAAACTCGTTGTTCTGCCTTGGATACTTGGTTGCTGGCTAGATTTCTGCA 1195
Query 1196 CTTTCCCTATACTGGGAAAGACAGCTTCCCACACCGTTGAGGTTCTTTCAGACTATCCAC 1255
|||||| |||||| ||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1196 CTTTCCATATACTAGGAAAGACAGCTTTCCACAGCGTTGAGGTTCTTTCAGACTATCCAC 1255
Query 1256 TCATGGCTGACAAACATTGGTTAATGGGAACGTTGTACTTGGTA-TCTGCTTTAAGTTGC 1314
||||||||| ||| |||||||||||||||| ||||||||||||| | |||||||||||||
Sbjct 1256 TCATGGCTGTCAATCATTGGTTAATGGGAATGTTGTACTTGGTAGT-TGCTTTAAGTTGC 1314
Query 1315 ATGGAGCTTATCCAAAAGATAGTTCAGAAACGAGCCTTATGGTATCTGCTAGATGTTGCA 1374
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1315 ATGGAGCTTATCCAAAAGATAGTTCAGAAACGAGCCTTTTGGTATCTGCTAGATGTTGCA 1374
Query 1375 GAACCAAACTACAAAGTCACCAAACTGCATCTTGGTCCCATTCTCTTGGCGTTTGCTTTG 1434
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1375 GAACCAAACTACAAAATCACCAAACTCCATCTTGGTCCCATTCTCTTGGCGTTTGCTTTC 1434
Query 1435 CATGGGACAATGGTGGTGATTGTGCTTCACTTACCAATAAAAACAATCAGTCTCATCAGC 1494
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 CATGGGGCAATGGTGGTGATTGTGCTTCACTTACCAATAAAAACAATCAGTCTCATCAGC 1494
Query 1495 CAGTCCTTTTTCCCTCTCCAATTTGGGGTGTACGAGGATGAGTTTGTGTTTGGCTTACTT 1554
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1495 CAGTCCTTTTTCCCTCTCCAATTTGGGGTGTACGAGGATGAGTTTGTGCTTGGCTTACTT 1554
Query 1555 GTTGCTTATATGTGCCTAGTAATATTCGGTCCCCGGTGGTTAGCCAATTTAATTAGACCA 1614
|||||||||| | ||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1555 GTTGCTTATACGGGCCTAATAAGCTTCGGTCCCCGGTGGTTAGCCAATTTAATTAGACCA 1614
Query 1615 TCCATCAGACCCATAGTTCACAAGTGGGTTATCACTATCAGTTCTTTGCTCAAGTTGAGT 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 TCCATCAGACCCATAGTTCACAAGTGGGTTATCACTATCAGTTCTTTGCTCAAGTTGAGT 1674
Query 1675 GATTTCTTGCTTGGAGAGCCCCGAAAACACCGTGCAAATCATAAT---A---TGAGACTT 1728
|||||||||||||||||||||||||||||||||||||||| |||| | ||||||
Sbjct 1675 GATTTCTTGCTTGGAGAGCCCCGAAAACACCGTGCAAATCGTAATGTGAGAGTGAGACCA 1734
Query 1729 CGGTGTCTAGTATTTGGCATAGCTGAAGGCTCTATGGTCAGTTTGCATGGATCTCAAAGC 1788
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1735 CGGTTTCTAGTATTTGGCATAGCTGAAGGCTCTATGGTCAGTTTGTATGGATCTCAAAGT 1794
Query 1789 GATACCACCTGTGAAAAGGATACAAACGAGCAAAGAGATAAAAGGTTTATGGTGAGGATT 1848
||||||||||||||| |||| |||||||| ||||||||||||||||||||| ||||||||
Sbjct 1795 GATACCACCTGTGAAGAGGACACAAACGACCAAAGAGATAAAAGGTTTATGCTGAGGATT 1854
Query 1849 GGAGTGATGTTGATTCTTGCTTCTCTGAGTATGTTTCTTGTTAGTACAACCTTCATGGCT 1908
||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 GGATTGATGTTGGTTCTAGCTTCTCTGAGTATGTTTCTTGTTAGTACAACCTTCATGGCT 1914
Query 1909 TTACCAATTCTAGTGGGAAGGGCGTTTTTCCACTCTATCTCTTTCTTCATGCTAAGTTTC 1968
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1915 TTACCAATTCTAGTGGGAAGGGCGTTCTTCCACTCTATCTCTTTCTTCATGCTAAGTTTC 1974
Query 1969 GGACTCAAACACGACGATCTTTGTGCTTTCTGGATTGGATTCTGTATCCTGCGAGGAATC 2028
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 AGACTCAAACACGACGATCTTTGTGCTTTCTGGATTGGATTCTGTATCCTGCGAGGAATC 2034
Query 2029 TATATCATCACTTGCTTTGTCTATGATCATTTCATAACGGGAAGAA-CCGATTTGCTTCT 2087
||||||||||||||||| ||||||||||||||| | ||||||||| || |||||||| |
Sbjct 2035 TATATCATCACTTGCTTCGTCTATGATCATTTCGTGACGGGAAGAGTCC-ATTTGCTTAT 2093
Query 2088 CAACCATGTCCTGATGTTCATACGGAATGTCTTGTTATTCTCCATATGGATCTCTGTCAT 2147
||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2094 CAACCATTTCATGATGTTCATACGGAATGTCTTGTTATTCTCCATATGGATCTCAGTCAT 2153
Query 2148 ACCGGGAGTGCTCGGTCTCCTTATCGACCTTATGATCATCATCCCATCACAAGTTCCGCT 2207
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2154 ACCGGGATTGCTCGGTCTCCTTATCGACCTTATGATCATCATCCCATCACAAGTTCCGCT 2213
Query 2208 AGGTGAATCCCCAGTATATAACTTGCTCCACGATTGGTTGATCGGTGTAGTCGTCCTACA 2267
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2214 AAACGAATCCCCAGTATATAACTTGCTCCACGATTGGTTGATCGGTGTAGTCGTCCTTCA 2273
Query 2268 CATCTGGATCTTTCTGACTATGCTCACACGGATCAACTGTTTTGCAACTGTGGCCTGGCG 2327
||||||||||||||||||||||| ||||| |||||||||||| || ||||||| |||||
Sbjct 2274 CATCTGGATCTTTCTGACTATGCGCACACAGATCAACTGTTTCGCGACTGTGGTGTGGCG 2333
Query 2328 GGAAAAGCTTCAAAGAATCAGAAGCGTTACAATCAACCGACTTCCCTTTACGTGGCTGAT 2387
|||||||||||| ||||||||||||||| ||||||| ||||||||||||| ||| ||||
Sbjct 2334 GGAAAAGCTTCACAGAATCAGAAGCGTTGGAATCAACGGACTTCCCTTTACTTGGTTGAT 2393
Query 2388 TCGAGATGTTATTGGTTCGATCATAGTGTCCCTTTTATTCACTCTCTGCGTTCCCTACGT 2447
||||||||||||||| |||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct 2394 TCGAGATGTTATTGGCTCGATCATAGTGTCTCTTTTACTCACTCTCTGCGTGCCCTACGT 2453
Query 2448 GGTGGTAAACTCTCTGTTCCCAATTCTTGGATTTTCCAGTGCAGTCAACTTAACCGTCCA 2507
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2454 GGTGGTGAACTCTCTGTTCCCAATTCTTGGATTTTCCAGTGCAGTCAACTTAACTGTTCA 2513
Query 2508 GCGGTTCATTTGGCCGGCGATCCTTGCCTTAATCCCCATATGGTTTAGTGTCAAGCTCAT 2567
|||||||||||||||||||||||| | ||| || |||||| |||||||||||| ||||||
Sbjct 2514 GCGGTTCATTTGGCCGGCGATCCTAGTCTTTATTCCCATAGGGTTTAGTGTCACGCTCAT 2573
Query 2568 TCGTGATCTTATCCTCTACCTTCACAAGCTGGAATTCGATAATCGATACAAAGTGGGCGA 2627
||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2574 TCGTGATCTTATCATTTACCTTCACCAGCTGGAATTCGATAATCGATACAAAGTGGGCGA 2633
Query 2628 GAGGCTGGTCGATTTCACTGAAGATCTCGAGTAACAACGACCAAAACCAATGGTTATTAA 2687
||||||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||||||
Sbjct 2634 GAGGCTGGTAGATTTCACTGACGATCTCGAGTAACAAGGACCAAAACCAATTGTTATTAA 2693
Query 2688 TAGAGAATGTACCTAGTCTTCAATTATAAGTACATATACA--GTTTCTTGGTGGGTGAAA 2745
|||||| ||| ||||||||||||||| ||||||| | ||||||||||||||||||
Sbjct 2694 TAGAGA--GTA----GTCTTCAATTATAAGCACATATATATAGTTTCTTGGTGGGTGAAA 2747
Query 2746 GTGAAACAGTCTTCTTCACTTAAGATTGA-GAATCATCGAGTCCTTGGGGCATCTTAAGT 2804
||||||||||||||||||||| | ||| ||||||||||||| ||||||| ||
Sbjct 2748 ------CAGTCTTCTTCACTTAAGATT-ATGAAGAATCGAGTCCTTGGAGCATCTTCTGT 2800
Query 2805 TTCATTAATATGATAATGGATGGTGCAATGTGTAGATTTTGCTTATGATATGCAATTTAC 2864
||||| ||||||||||||||||||||||||| || ||||||||||||||||||| ||||
Sbjct 2801 TTCATAAATATGATAATGGATGGTGCAATGTCTAAATTTTGCTTATGATATGCAGTTTAT 2860
Query 2865 ACGATTGATTAGTTTCAAAATATGATGCAAGTTTTATATTCTCAACAACACAATGTACAA 2924
||| |||| |||||||||||| ||||| ||||||| | ||||||||||||||||||||||
Sbjct 2861 ACGGTTGAATAGTTTCAAAATGTGATGTAAGTTTTTTCTTCTCAACAACACAATGTACAA 2920
Query 2925 CAGAGGTATTTTCCAG 2940
||||| ||||||||||
Sbjct 2921 CAGAGTTATTTTCCAG 2936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111185425155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5