BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32690.1 Length=856 Score E Sequences producing significant alignments: (Bits) Value Ahg491439 jgi|Araly1|491439|fgenesh2_kg.7__872__AT4G32690.1 1068 0.0 > Ahg491439 jgi|Araly1|491439|fgenesh2_kg.7__872__AT4G32690.1 Length=769 Score = 1068 bits (578), Expect = 0.0 Identities = 723/789 (92%), Gaps = 25/789 (3%) Strand=Plus/Plus Query 1 TTTTTAAAATTCAATTCAATCACCCACAGTTTCTTCATCACTGCg-a-gagagacgaaaa 58 ||||||||||||||||||||| ||||||||||| ||| ||||||| | ||||| | | | Sbjct 1 TTTTTAAAATTCAATTCAATCGCCCACAGTTTC-TCACCACTGCGAACCAGAGA-G-AGA 57 Query 59 ccagagagagagagagagagagGGAGATGCAATCGCTGCAAGATAAGGCATCGGTGTTAA 118 | || | | | |||||||| ||||||||||||||||| || |||||||||||||| | Sbjct 58 -C-GA-A-A-A-CCAGAGAGAGAGAGATGCAATCGCTGCAGGAGAAGGCATCGGTGTTGA 111 Query 119 GCGGCGTCGATCAGGCTGAGGCGTTCGCCATCGACGAGTCCAATCTGTTCGACAAGCTTG 178 ||||||| |||||||||||||| || ||||| ||||| |||||||||||||| ||||||| Sbjct 112 GCGGCGTGGATCAGGCTGAGGCTTTTGCCATTGACGAATCCAATCTGTTCGAAAAGCTTG 171 Query 179 GTCTTCAGACATTCATCAACCTATCCACCAATTTCTATACCAGGGTATATGATGACGAAG 238 |||||||| | ||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 172 GTCTTCAGGCCTTCATCAACCTATCCACTAATTTCTACACCAGGGTATATGATGACGAAG 231 Query 239 AAGAATGGTTTCAATCAATATTTTCTAACTCTAACAAAGAAGATGCCATCCAAAACCAGT 298 |||||||||||| |||||||||||||||||| |||||||||||||| ||||| ||||||| Sbjct 232 AAGAATGGTTTCGATCAATATTTTCTAACTCAAACAAAGAAGATGCTATCCAGAACCAGT 291 Query 299 ATGAGTTCTTTGTCCAGCGTATGGGAGGCCCTCCTTTGTATTCTCAGA-GAAAAGGTCAT 357 |||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 292 ATGAGTTCTTCGTCCAGCGTATGGGAGGCCCTCCTTTGTATTCTCA-ACGAAAAGGTCAT 350 Query 358 CCTGCTTTGATCGGACGTCACCGTCCATTTCCAGTGACCCATCAAGCTGCTGAGAGATGG 417 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 351 CCTGCTTTGATCGGACGTCACCGTCCATTTCCAGTGACCCATCAAGCTGCAGAGAGATGG 410 Query 418 CTAG-AGCACATGCAAAATGCTCTGGACGATTCGGTTGACATTGACCAGGACTCAAAAAT 476 || | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 411 CT-GCAGCACATGCAAAATGCTCTGGACGATTCGGTTGACATTGACGAGGACTCAAAAAT 469 Query 477 CAAAATGATGAAGTTCTTT-AGACACACCGCATTTTTCCTTGTGGCTGGAAACGAGCTGA 535 ||||||||||||||| ||| || ||||||||||| ||||||||||||||||||||||||| Sbjct 470 CAAAATGATGAAGTT-TTTCAGGCACACCGCATTCTTCCTTGTGGCTGGAAACGAGCTGA 528 Query 536 AGAATCAGAATGAGAAACCGAAGCATAAGCCTCAATGTGCTTGTAAACACGCAGCCAATA 595 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 529 AGAATCAGAATGAGAAACCGAAGCATAAGCCTCAATGTGCTTGTAAACACGCAGCCAATA 588 Query 596 AACCAGCAGAAGAATAATTTAACTACAGATTCTTGTTCTACTTTAAGTTTCCATTCAAAG 655 ||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 589 AACCAGCTGAAGAATAATTTAACTACAGATTCTTGTTCTACTTTAACTTTC-ATTCAAAG 647 Query 656 TACACAAAAGATTCTACGGAATATTGGTCTTTCCTGGAAAGCTATGTAAGAGAAATAGAA 715 |||||||| ||||| | |||||||||||||||||||| |||| ||||||||||||||||| Sbjct 648 TACACAAA-GATTCGA-GGAATATTGGTCTTTCCTGGGAAGCAATGTAAGAGAAATAGAA 705 Query 716 CTGGTCTACTCTTGGCTCTCACTGCAAATTTGCAATAGCACTTTTTCATTAGATGGTCTG 775 ||||||| | |||||| ||| |||||||||||||||||||||||||| ||||||| Sbjct 706 CTGGTCT--TAA---CTCTCATTGCGAATTTGCAATAGCACTTTTTCATTAGCTGGTCTG 760 Query 776 ACACAAAAT 784 |||| ||| Sbjct 761 CCACAGAAT 769 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31680144027 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5