BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32690.1
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491439 jgi|Araly1|491439|fgenesh2_kg.7__872__AT4G32690.1 1068 0.0
> Ahg491439 jgi|Araly1|491439|fgenesh2_kg.7__872__AT4G32690.1
Length=769
Score = 1068 bits (578), Expect = 0.0
Identities = 723/789 (92%), Gaps = 25/789 (3%)
Strand=Plus/Plus
Query 1 TTTTTAAAATTCAATTCAATCACCCACAGTTTCTTCATCACTGCg-a-gagagacgaaaa 58
||||||||||||||||||||| ||||||||||| ||| ||||||| | ||||| | | |
Sbjct 1 TTTTTAAAATTCAATTCAATCGCCCACAGTTTC-TCACCACTGCGAACCAGAGA-G-AGA 57
Query 59 ccagagagagagagagagagagGGAGATGCAATCGCTGCAAGATAAGGCATCGGTGTTAA 118
| || | | | |||||||| ||||||||||||||||| || |||||||||||||| |
Sbjct 58 -C-GA-A-A-A-CCAGAGAGAGAGAGATGCAATCGCTGCAGGAGAAGGCATCGGTGTTGA 111
Query 119 GCGGCGTCGATCAGGCTGAGGCGTTCGCCATCGACGAGTCCAATCTGTTCGACAAGCTTG 178
||||||| |||||||||||||| || ||||| ||||| |||||||||||||| |||||||
Sbjct 112 GCGGCGTGGATCAGGCTGAGGCTTTTGCCATTGACGAATCCAATCTGTTCGAAAAGCTTG 171
Query 179 GTCTTCAGACATTCATCAACCTATCCACCAATTTCTATACCAGGGTATATGATGACGAAG 238
|||||||| | ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 172 GTCTTCAGGCCTTCATCAACCTATCCACTAATTTCTACACCAGGGTATATGATGACGAAG 231
Query 239 AAGAATGGTTTCAATCAATATTTTCTAACTCTAACAAAGAAGATGCCATCCAAAACCAGT 298
|||||||||||| |||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 232 AAGAATGGTTTCGATCAATATTTTCTAACTCAAACAAAGAAGATGCTATCCAGAACCAGT 291
Query 299 ATGAGTTCTTTGTCCAGCGTATGGGAGGCCCTCCTTTGTATTCTCAGA-GAAAAGGTCAT 357
|||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 292 ATGAGTTCTTCGTCCAGCGTATGGGAGGCCCTCCTTTGTATTCTCA-ACGAAAAGGTCAT 350
Query 358 CCTGCTTTGATCGGACGTCACCGTCCATTTCCAGTGACCCATCAAGCTGCTGAGAGATGG 417
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 351 CCTGCTTTGATCGGACGTCACCGTCCATTTCCAGTGACCCATCAAGCTGCAGAGAGATGG 410
Query 418 CTAG-AGCACATGCAAAATGCTCTGGACGATTCGGTTGACATTGACCAGGACTCAAAAAT 476
|| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 411 CT-GCAGCACATGCAAAATGCTCTGGACGATTCGGTTGACATTGACGAGGACTCAAAAAT 469
Query 477 CAAAATGATGAAGTTCTTT-AGACACACCGCATTTTTCCTTGTGGCTGGAAACGAGCTGA 535
||||||||||||||| ||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 470 CAAAATGATGAAGTT-TTTCAGGCACACCGCATTCTTCCTTGTGGCTGGAAACGAGCTGA 528
Query 536 AGAATCAGAATGAGAAACCGAAGCATAAGCCTCAATGTGCTTGTAAACACGCAGCCAATA 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 AGAATCAGAATGAGAAACCGAAGCATAAGCCTCAATGTGCTTGTAAACACGCAGCCAATA 588
Query 596 AACCAGCAGAAGAATAATTTAACTACAGATTCTTGTTCTACTTTAAGTTTCCATTCAAAG 655
||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 589 AACCAGCTGAAGAATAATTTAACTACAGATTCTTGTTCTACTTTAACTTTC-ATTCAAAG 647
Query 656 TACACAAAAGATTCTACGGAATATTGGTCTTTCCTGGAAAGCTATGTAAGAGAAATAGAA 715
|||||||| ||||| | |||||||||||||||||||| |||| |||||||||||||||||
Sbjct 648 TACACAAA-GATTCGA-GGAATATTGGTCTTTCCTGGGAAGCAATGTAAGAGAAATAGAA 705
Query 716 CTGGTCTACTCTTGGCTCTCACTGCAAATTTGCAATAGCACTTTTTCATTAGATGGTCTG 775
||||||| | |||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct 706 CTGGTCT--TAA---CTCTCATTGCGAATTTGCAATAGCACTTTTTCATTAGCTGGTCTG 760
Query 776 ACACAAAAT 784
|||| |||
Sbjct 761 CCACAGAAT 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31680144027
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5