BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32710.1
Length=1618
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353556 jgi|Araly1|353556|fgenesh1_pg.C_scaffold_7000729 2019 0.0
> Ahg353556 jgi|Araly1|353556|fgenesh1_pg.C_scaffold_7000729
Length=2166
Score = 2019 bits (1093), Expect = 0.0
Identities = 1272/1357 (94%), Gaps = 17/1357 (1%)
Strand=Plus/Plus
Query 1 GAGTCTACCTGTA-ACGACGTCGTATCACCGATCATCCGCCGGATTCTTATTTGGCGGTG 59
|||||| |||| | |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 795 GAGTCTGCCTG-AGACGACGTCGTATCACCGATCTTCCGCCGGATTCTTATTTGGCGGTG 853
Query 60 TAATCGTTGGAGCTCTTCTACTAATTCTGTTAGGTCTTCTCTTTGTCTTCTACAGAGCTA 119
||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 854 TAATCGTTGGAGCACTTCTACTTGTTCTGTTAGGTCTTCTCTTTGTCTTTTACAGAGCTA 913
Query 120 CCAGAAATAGAAATAACAACAGCAGCTCTGCTCATCATCAATCCAAAACTCCCTCAAAAG 179
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 914 CCAGAAATAGAAATAACAACAACAGCTCTGCTCATTATCAATCCAAAACTCCCTCAAAAG 973
Query 180 TTCAACATCATCGGGGCGGTAATGCTGGTACGAACCAGGCACATGTTATCACAATGCCAC 239
||||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||||
Sbjct 974 TTCAACATCATCGGGGCGGTAATACCGGTCCAAACCAGGCACATGTTATCACAATGCCAC 1033
Query 240 CACCAATCC--A-TG------CTAAATATATATCTAGTGGAGGTTGTGATACGAAGGAGA 290
| ||||||| | || |||||||| ||||||||||||| || ||| || ||||
Sbjct 1034 CTCCAATCCATACTGCACCACCTAAATATTTATCTAGTGGAGGCAATGGTACTAAAGAGA 1093
Query 291 ACAATTCTGTTGCGAAAAACATTTCAATGCCATCTGGAATGTTCTCCTACGAAGAACTTT 350
||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1094 ACAATTCTGTTGCAAAAAACATTACAATGCCATCTGGAATGTTCACCTACGAAGAACTTT 1153
Query 351 CAAAAGCAAC-TGGTGGATTTTCAGAGGAGAACCTTTTGGGAGAAGGCGGTTTCGGATAT 409
| ||||||| | ||||||||||||||| |||||||||||| |||||||||||||| |||
Sbjct 1154 CGGAAGCAACAT-GTGGATTTTCAGAGGCGAACCTTTTGGGGGAAGGCGGTTTCGGTTAT 1212
Query 410 GTTCACAAAGGAGTG-TTGAAAAACGGGACAGAAGTTGCGGTGAAGCAGCTGAAGATTGG 468
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 GTTCACAAAGGAGTGCTT-AAAAACGGGACAGAAGTTGCGGTGAAGCAGCTGAAGATTGG 1271
Query 469 GAGCTATCAAGGGGAAAGAGAATTCCAAGCTGAGGTTGACACAATCAGTAGGGTTCATCA 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 GAGCTATCAAGGGGAAAGAGAATTCCAAGCTGAGGTTGACACAATCAGTAGGGTTCATCA 1331
Query 529 TAAGCACCTCGTTTCATTGGTTGGTTATTGCGTTAATGGAGATAAAAGACTCTTGGTTTA 588
|||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1332 TAAGCATCTTGTTTCATTGGTTGGTTATTGCGTTAACGGAGATAAAAGACTCTTGGTTTA 1391
Query 589 CGAGTTTGTTCCTAAAGATACCTTGGAGTTCCACTTGCATGAGAA-CAGAGGAAGCGTGT 647
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||
Sbjct 1392 CGAGTTTGTTCCTAAAGATACCTTGGAGTTCCACTTGCATG-GAAACAGAGGAAGTGTGT 1450
Query 648 TGGAATGGGAAATGAGGCTCAGGATTGCTGTAGGAGCAGCAAAAGGATTAGCTTATCTTC 707
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1451 TAGAGTGGGAAATGAGGCTCAGGATTGCTGTAGGAGCAGCAAAAGGATTAGCATATCTTC 1510
Query 708 ATGAGGATTGCAGTCCAACTATAATTCACCGTGATATCAAAGCAGCTAATATCCTTCTAG 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1511 ATGAGGATTGCAGTCCAACTATAATTCACCGTGATATCAAAGCAGCTAATATCCTTCTAG 1570
Query 768 ATTCCAAATTTGAGGCAAAGGTCTCTGACTTTGGACTAGCCAAGTTTTTCTCAGACACCA 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1571 ATTCCAAATTTGAGGCAAAGGTCTCTGACTTTGGACTAGCCAAGTTTTTCTCAGACACCA 1630
Query 828 ATTCATCATTCACTCATATCTCTACTCGAGTGGTAGGAACTTTCGGATACATGGCTCCAG 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1631 ATTCATCATTCACTCATATCTCTACTCGAGTGGTAGGAACTTTCGGATACATGGCTCCAG 1690
Query 888 AATACGCGTCCAGTGGTAAAGTAACTGATAAATCAGATGTATATTCCTTTGGGGTCGTGC 947
|||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 1691 AATACGCGTCTAGTGGTAAAGTAACTGACAAATCAGATGTATATTCATTTGGGGTTGTGC 1750
Query 948 TTCTAGAACTCATCACTGGACGTCCATCAATTTTCGCCAAAGATTCTTCCACAAACCAGA 1007
|||| |||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 1751 TTCTTGAACTCATCACTGGACGTCCATCAATTTTCCCCAAAGATCCTACCACAAACCAGA 1810
Query 1008 GTTTAGTAGACTGGGCGAGGCCATTGCTTACGAAAGCAATCTCTGGAGAAAGTTTTGACT 1067
||||||| |||||||| || |||||||| | ||||||||||||||||| || || |||
Sbjct 1811 GTTTAGTTGACTGGGCAAGACCATTGCTGGCTAAAGCAATCTCTGGAGAGAGCTTCGACC 1870
Query 1068 TTCTTGTAGACTCAAGGTTGGAGAAGAATTACGATACAACTCAGATGGCAAACATGGCTG 1127
||||||||||| | ||||||| |||||||||||| |||| ||| |||||||||||||||
Sbjct 1871 TTCTTGTAGACCCGAGGTTGGTTAAGAATTACGATTCAACCCAGGTGGCAAACATGGCTG 1930
Query 1128 CTTGTGCTGCTGCTTGCATACGCCAATCAGCTTGGCTTCGGCCTAGAATGAGCCAGGTAG 1187
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1931 CTTGTGCTGCTGCTTGCATACGCCAATCAGCTTGGCTTCGCCCCCGAATGAGCCAGGTAG 1990
Query 1188 TACGTGCTCTTGAAGGCGAGGTGGCCCTGAGAAAGGTCGAAGAGACTGGGAATAGCGTGA 1247
||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1991 TACGTGCCCTTGAAGGCGAGGTGGCCCTAAGAAAGGTCGAAGAGACGGGGAATAGCGTGA 2050
Query 1248 CCTATAGCTCTTCTGAAAACCCGAATGACATCACACCACGGTATGGAACAAATAAGAGGA 1307
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2051 CTTATAGCTCTTCTGAAAACCCGAATGACATCACACCACGGTATGGAACAAATAAGAGGA 2110
Query 1308 GATTCGACACAGGTTCAAGCGATGGTTACACTTCAGA 1344
||||||||||| |||||||||||||||||||||||||
Sbjct 2111 GATTCGACACAAGTTCAAGCGATGGTTACACTTCAGA 2147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60639670040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5