BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G32714.1

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg888832 jgi|Araly1|888832|Al_scaffold_0007_818                     344    2e-94


> Ahg888832 jgi|Araly1|888832|Al_scaffold_0007_818
Length=240

 Score =  344 bits (186),  Expect = 2e-94
 Identities = 222/238 (93%), Gaps = 8/238 (3%)
 Strand=Plus/Plus

Query  25   GTTTCTTACGTTCTTGTCTTTCTCGTTCTTAGCGTC-TGTAAAGAAGTGGAAGCC--AAA  81
            |||||||| ||||||||||||||||||||| || || ||||||| | |  || ||  |||
Sbjct  1    GTTTCTTATGTTCTTGTCTTTCTCGTTCTTTGC-TCTTGTAAAG-A-TTCAA-CCAAAAA  56

Query  82   -GAACTGTGTAATAGAATAGAAGACATCGATGGAAATTGTGACTTTGAAGGAGAGAAGGG  140
             ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  57   CGAACTGTGTAATAGAATAGAAGACATCGATGGAAATTGTGACTTTCAAGGAGAGAAGGG  116

Query  141  GTGCTTGAAATTCATGACGAATAAATATAAGAAAGAAAGACATGTTAGCTGCACATGTAC  200
            |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct  117  GTGCTTGAAATTCATGACGAATAAGTATAAGAAAGAAAGACATGTTAGCTGCAAATGTAC  176

Query  201  TAACCTTTACATGTTACACAAGACCAAACGTTTTTGCGACTGTAAACATCGCTGCTCA  258
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  177  TAACCTTTACATGTTACACAAGACCAAACGTTTTTGCGACTGTAAACATCGATGCTCA  234



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9203370901


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5